genome.fa.s7518.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007518.1 Hibiscus syriacus cultivar Beakdansim tig00020944_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80488

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789--842	24	2.2	24	90	0	81	38	20	16	24	1.92
1825--1898	19	4.5	16	83	16	66	13	20	18	47	1.82
1821--1888	19	3.8	19	87	12	101	13	22	17	47	1.82
2003--2039	14	2.6	14	86	0	56	48	21	0	29	1.50
3895--3949	19	2.9	19	91	0	92	36	23	23	16	1.94
4036--4093	14	3.9	14	79	16	71	10	17	24	48	1.78
4019--4109	32	2.8	33	93	3	157	12	17	21	48	1.80
4095--4137	20	2.2	20	87	4	61	18	23	20	37	1.94
4103--4148	20	2.3	20	88	0	65	15	21	26	36	1.93
4630--4674	18	2.5	18	88	0	72	13	15	44	26	1.83
6289--6332	22	2.0	22	95	0	79	18	15	45	20	1.85
6518--6611	20	4.7	20	80	2	89	23	18	24	34	1.96
6498--6612	20	5.7	20	78	5	88	23	17	23	35	1.95
6601--6693	20	4.5	21	78	4	100	17	24	18	39	1.91
6540--6674	41	3.3	41	82	4	139	19	21	20	38	1.94
6601--6693	41	2.3	41	100	0	186	17	24	18	39	1.91
7152--7180	2	14.5	2	100	0	58	51	0	0	48	1.00
7449--7542	49	1.9	48	89	2	143	42	10	14	31	1.80
13111--13176	29	2.3	29	76	5	71	36	4	15	43	1.67
14121--14223	52	2.0	52	98	0	197	21	23	13	41	1.88
18714--18816	52	2.0	52	94	0	179	22	21	13	42	1.87
19072--19121	21	2.4	21	93	0	82	28	28	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19086--19166	21	4.0	20	71	12	58	30	20	20	27	1.98
19180--19230	19	2.5	20	87	6	68	21	19	27	31	1.97
19174--19247	21	3.6	21	85	7	98	20	18	28	32	1.96
21303--21327	3	8.3	3	100	0	50	32	0	0	68	0.90
23863--23893	5	6.2	5	96	0	53	16	80	0	3	0.83
31732--31771	19	2.1	18	90	9	62	37	5	0	57	1.21
36568--36597	12	2.5	12	100	0	60	0	20	23	56	1.42
36595--36633	16	2.4	16	95	0	69	30	28	20	20	1.98
43993--44033	21	2.0	20	85	4	55	39	19	0	41	1.52
44015--44133	39	3.0	39	89	4	175	45	17	3	33	1.65
47269--47323	16	3.5	16	82	2	67	9	16	25	49	1.75
47284--47410	58	2.2	59	81	4	150	14	14	24	46	1.82
48663--48687	12	2.1	12	100	0	50	40	0	0	60	0.97
50940--50975	18	1.9	19	88	5	56	61	2	5	30	1.33
51544--51600	3	19.0	3	92	7	98	64	0	0	35	0.93
52505--52543	18	2.2	17	86	4	51	20	5	12	61	1.50
56831--56930	52	1.9	52	85	4	139	33	13	16	38	1.86
61565--61608	18	2.3	19	84	11	54	27	6	2	63	1.31
64829--64873	21	2.1	21	83	0	54	33	13	17	35	1.89
65264--65356	42	2.2	42	84	0	114	34	20	19	25	1.96
65264--65356	21	4.4	21	77	0	87	34	20	19	25	1.96
69836--69879	23	1.9	23	90	9	72	18	9	15	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76397--76454	3	19.3	3	100	0	116	32	0	0	67	0.91
78028--78103	35	2.2	35	92	0	125	39	23	1	35	1.63
78483--78738	128	2.0	126	90	3	408	36	14	12	35	1.85
78665--78711	23	2.1	21	84	7	58	31	14	19	34	1.92
78738--78781	20	2.2	20	100	0	88	61	4	15	18	1.50
79081--79143	28	2.3	27	78	8	63	46	1	3	49	1.27
79221--79254	16	2.0	18	88	11	54	64	5	2	26	1.30
79292--79323	15	2.1	15	94	0	55	40	3	0	56	1.15

Tables:   1

The End!