Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007519.1 Hibiscus syriacus cultivar Beakdansim tig00020947_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87730

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
838--938
51
2.0
51
90
0
157
16
14
41
26
1.88
1137--1185
3
16.7
3
83
12
66
69
0
2
28
1.00
1130--1185
22
2.5
22
83
11
78
71
1
1
25
1.05
4797--4859
21
3.0
21
90
0
99
23
12
28
34
1.92
10055--10111
28
2.1
28
90
3
89
28
19
14
38
1.90
11907--11980
21
3.6
21
72
3
78
22
17
24
35
1.95
11903--12103
41
4.9
41
88
4
266
18
19
23
37
1.94
11928--12082
20
7.6
20
65
12
82
15
21
23
40
1.91
11992--12125
21
6.5
21
66
22
77
17
19
26
35
1.94
12176--12238
6
10.5
6
100
0
126
33
50
15
0
1.45
12734--12826
6
15.5
6
100
0
186
0
16
50
33
1.45
14065--14116
6
8.7
6
100
0
104
0
0
17
82
0.66
15548--15791
118
2.0
120
94
1
429
40
8
4
45
1.55
18701--18734
17
2.0
17
100
0
68
47
5
23
23
1.73
22393--22447
16
3.7
16
77
18
57
63
0
1
34
1.05
22393--22447
15
3.7
15
75
4
58
63
0
1
34
1.05
27619--27699
35
2.5
31
73
11
81
19
6
3
70
1.24
27679--27763
4
21.0
4
71
15
52
21
3
2
72
1.10
39270--39580
65
4.8
65
93
0
507
34
25
20
19
1.96
39270--39623
194
1.8
193
87
4
534
33
25
20
20
1.97
41937--42019
4
20.0
4
72
14
62
22
3
2
71
1.14
41938--42020
17
4.6
17
71
11
67
21
3
2
72
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50471--50553
14
5.9
14
86
0
121
10
10
18
60
1.58
50475--50553
28
2.8
28
100
0
158
11
10
17
60
1.57
50710--50747
20
1.9
20
88
0
58
21
13
10
55
1.67
50710--50748
10
3.9
10
82
0
51
20
12
10
56
1.65
53868--53959
10
9.2
10
70
17
50
61
18
9
9
1.53
53851--53960
23
4.7
23
78
4
103
60
17
10
11
1.57
54144--54176
14
2.4
14
94
0
57
57
18
12
12
1.64
55473--55517
20
2.1
22
88
8
67
46
20
6
26
1.75
58198--58247
22
2.3
23
86
6
68
32
12
34
22
1.90
58120--58312
95
2.0
97
83
7
243
31
15
26
26
1.96
58678--59067
55
7.1
55
86
0
496
28
21
21
28
1.98
58695--58782
27
3.2
27
68
15
81
29
20
21
28
1.98
58678--59052
164
2.3
165
88
1
540
29
20
21
28
1.98
61178--61231
21
2.7
20
83
13
74
29
16
31
22
1.96
61271--61315
22
2.0
23
86
4
65
35
13
26
24
1.92
61189--61380
94
2.0
97
80
5
221
31
16
26
25
1.96
61198--61393
95
2.1
95
79
3
207
32
16
24
26
1.96
62997--63072
33
2.3
33
80
15
86
13
3
6
76
1.12
63061--63153
19
4.9
19
73
17
86
29
5
0
65
1.14
63136--63190
21
2.6
20
81
16
58
16
7
0
76
1.00
63136--63189
5
10.2
5
77
18
56
16
7
0
75
1.01
63230--63286
26
2.1
28
83
6
73
10
8
5
75
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65443--65600
64
2.4
65
83
7
187
34
19
23
22
1.96
65608--65645
20
1.9
20
100
0
76
31
15
23
28
1.96
66310--66361
18
2.9
18
88
0
86
17
19
32
30
1.95
73462--73495
14
2.5
14
90
4
52
82
2
14
0
0.79
74098--74124
14
1.9
14
100
0
54
40
22
14
22
1.90
74430--74549
43
2.8
43
81
0
150
35
30
12
22
1.91
76809--76847
5
7.2
5
91
8
51
17
7
0
74
1.05
76826--76920
9
12.1
8
80
17
51
14
9
1
74
1.11
76852--76945
47
2.1
43
80
11
100
13
10
1
74
1.13
76943--76990
22
2.2
21
85
10
62
16
4
4
75
1.12
77020--77071
17
3.1
17
78
16
63
11
5
3
78
1.05
77478--77703
55
4.1
55
87
3
294
29
21
20
27
1.98
77478--77749
55
4.9
56
85
1
221
29
20
20
28
1.98
79299--79355
24
2.3
24
80
11
62
31
3
14
50
1.59

Tables:   1

The End!