genome.fa.s752.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000752.1 Hibiscus syriacus cultivar Beakdansim tig00001455_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  122949

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6695--6758	30	2.1	30	100	0	128	37	12	20	29	1.89
11143--11187	21	2.1	21	87	0	63	11	26	20	42	1.85
15495--15529	18	1.9	18	88	0	52	25	17	20	37	1.94
16428--16517	31	3.0	29	77	9	74	36	4	8	50	1.54
16449--16537	31	3.0	31	80	8	96	39	6	6	47	1.57
17297--17355	31	1.9	31	82	6	75	33	11	15	38	1.84
18520--18562	21	2.0	21	100	0	86	32	18	18	30	1.95
30721--30761	2	20.5	2	100	0	82	51	0	0	48	1.00
30972--31422	4	113.5	4	98	1	881	25	0	24	50	1.50
33763--33798	15	2.5	15	86	4	56	58	2	2	36	1.27
35478--35516	10	3.9	10	83	12	53	33	25	0	41	1.56
35477--35517	20	2.1	19	90	4	64	34	24	0	41	1.55
35643--35851	111	1.9	111	95	0	382	35	8	9	46	1.66
37371--37405	18	1.9	18	94	0	61	28	22	20	28	1.98
37748--37791	3	14.7	3	85	0	52	31	25	36	6	1.82
37748--37798	18	2.8	18	81	0	66	31	23	35	9	1.87
37757--37796	21	1.9	21	89	0	62	30	20	37	12	1.89
45344--45377	2	17.0	2	100	0	68	50	0	0	50	1.00
50052--50182	33	4.0	33	91	0	199	36	8	19	35	1.82
73678--73770	45	2.1	45	83	4	116	26	37	10	24	1.88
74552--74781	64	3.6	63	80	6	212	27	17	25	29	1.98
74680--74718	19	2.1	19	95	0	69	25	15	38	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74573--74732	65	2.5	65	85	3	207	28	16	25	30	1.97
74574--74781	65	3.2	64	80	12	194	27	17	25	29	1.97
80816--80855	21	1.9	21	85	10	55	35	10	2	52	1.48
82780--83009	64	3.6	63	79	6	212	26	17	26	29	1.97
82908--82958	19	2.7	19	79	8	61	25	13	35	25	1.93
82802--83009	65	3.2	64	79	13	221	27	16	25	30	1.97
92665--93444	55	14.3	55	91	3	918	30	24	16	28	1.97
93444--93526	37	2.2	37	91	4	132	20	19	18	42	1.90
94800--94927	16	7.6	16	72	18	82	6	20	0	72	1.11
94806--94871	19	3.8	18	80	9	59	6	19	0	74	1.03
99945--99970	9	2.9	9	100	0	52	0	7	0	92	0.39
100790--100914	31	4.0	31	90	2	189	36	22	20	20	1.95
101652--101692	20	2.0	20	85	0	55	17	24	29	29	1.97
104021--104046	9	2.9	9	100	0	52	0	7	0	92	0.39
104020--104048	9	3.0	10	90	10	51	0	10	0	89	0.48
104867--104991	31	4.0	31	90	2	189	36	22	20	20	1.95
105726--105771	21	2.2	21	88	0	65	15	26	28	30	1.96
111186--111274	45	1.9	47	93	4	155	37	23	11	28	1.89
114721--114787	33	2.0	33	100	0	134	37	17	11	32	1.87
119172--119343	29	6.0	29	89	6	246	33	2	16	47	1.60

Tables:   1

The End!