genome.fa.s7520.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007520.1 Hibiscus syriacus cultivar Beakdansim tig00020958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66630

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4231--5053	134	6.1	134	83	3	963	32	22	15	30	1.95
5232--5263	3	10.7	3	100	0	64	34	0	0	65	0.93
7280--7644	131	2.8	131	77	9	350	33	10	15	40	1.82
10784--10817	11	3.0	11	86	4	50	0	14	0	85	0.60
17982--18042	30	2.0	30	87	6	88	49	3	1	45	1.28
17980--18098	52	2.2	53	81	8	134	46	6	0	46	1.35
18010--18067	22	2.6	23	86	2	82	44	6	0	48	1.29
18033--18131	29	3.3	31	76	19	102	46	6	0	47	1.27
18093--18133	21	1.9	22	85	5	57	51	2	0	46	1.14
25729--25768	16	2.6	16	84	11	57	27	5	0	67	1.11
28830--28901	28	2.6	28	100	0	144	13	9	12	63	1.51
28981--29063	41	2.0	41	100	0	166	25	40	4	28	1.76
36602--36634	17	1.9	17	88	11	50	30	0	3	66	1.06
38665--38699	6	5.8	6	93	0	52	45	0	54	0	0.99
45314--45442	43	3.0	42	77	7	125	30	17	15	36	1.91
47881--47948	31	2.2	31	94	0	118	19	14	14	51	1.76
48112--48146	2	17.5	2	100	0	70	51	0	0	48	1.00
48136--48207	25	2.8	25	85	10	101	45	4	6	43	1.50
48173--48621	37	12.6	37	77	14	412	43	4	8	44	1.52
48248--48411	25	6.6	25	71	10	120	43	4	9	42	1.58
48312--48521	62	3.2	62	83	11	240	43	4	8	42	1.56
48481--48535	28	2.0	28	82	7	67	45	5	7	41	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49148--49189	22	1.9	22	85	0	57	64	21	2	11	1.38
50064--50089	5	5.2	5	100	0	52	0	19	0	80	0.71
51364--51428	33	2.0	33	90	0	103	26	18	20	35	1.95
52726--52800	18	4.3	18	83	5	82	45	13	9	32	1.75
58586--58661	37	2.1	37	97	0	143	30	22	14	32	1.94
58726--58766	20	2.0	20	85	0	55	39	24	7	29	1.82
59886--59924	18	2.2	18	86	9	53	41	15	7	35	1.76
60795--60871	35	2.2	35	90	2	118	36	19	7	36	1.81

Tables:   1

The End!