genome.fa.s7521.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007521.1 Hibiscus syriacus cultivar Beakdansim tig00020965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93741

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5262--5317	28	1.9	30	86	13	82	71	0	1	26	0.96
5240--5329	21	3.9	22	76	16	67	68	3	1	26	1.11
6803--6994	29	6.6	29	87	0	231	46	19	2	31	1.62
8701--8726	11	2.4	11	100	0	52	0	0	7	92	0.39
14984--15261	145	1.9	146	85	3	391	45	10	6	38	1.64
15138--15189	23	2.3	23	80	3	61	50	3	3	42	1.39
15124--15551	195	2.2	199	81	8	491	48	8	5	38	1.57
15437--15551	33	3.6	32	75	18	103	51	6	4	37	1.49
15844--15889	22	2.3	19	85	11	56	47	6	15	30	1.70
19587--19672	26	3.2	26	65	16	68	34	10	10	44	1.73
19684--20431	375	2.0	377	81	8	880	34	9	9	47	1.68
20470--20606	65	2.1	64	84	10	174	43	2	2	52	1.25
20510--20574	27	2.3	29	89	10	100	46	1	0	52	1.10
20510--20579	28	2.5	30	84	13	103	45	1	0	52	1.09
20545--20611	19	3.6	19	67	18	59	44	1	0	53	1.09
20512--20613	37	3.1	33	78	21	101	45	1	0	52	1.12
20832--20856	13	1.9	13	100	0	50	44	8	0	48	1.32
22245--22303	29	2.0	29	96	0	109	38	18	3	38	1.68
40773--40842	24	2.9	24	76	0	68	50	17	14	18	1.79
43294--43334	18	2.3	18	86	0	55	12	17	48	21	1.79
45456--45527	16	4.6	16	76	11	69	52	0	0	47	1.00
45432--45525	37	2.6	36	74	22	90	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45435--45514	16	4.8	17	73	16	69	52	0	0	47	1.00
45435--45525	32	2.7	35	75	16	102	52	0	0	47	1.00
45432--45527	15	5.8	16	71	23	65	53	0	0	46	1.00
45466--45533	32	2.1	32	81	10	77	57	0	0	42	0.98
45495--45559	26	2.5	27	83	14	84	64	0	0	35	0.94
52365--52404	20	2.1	19	85	4	53	82	2	12	2	0.87
52348--52404	19	3.1	18	78	19	55	78	1	15	3	0.96
52377--52414	14	2.6	14	80	19	51	78	5	13	2	1.02
53472--53560	32	2.8	32	84	3	108	29	13	24	32	1.93
54109--54495	85	4.5	85	85	0	452	37	20	16	25	1.93
55209--55368	65	2.6	61	80	7	164	38	20	15	26	1.92
55251--55383	65	2.0	65	91	2	214	38	19	15	26	1.92
66012--66082	21	3.4	21	69	18	67	19	21	29	29	1.98
65996--66061	20	3.2	20	68	19	64	22	22	22	31	1.98
65996--66188	41	4.7	42	92	1	320	22	21	24	31	1.98
66649--66889	41	5.9	41	94	0	392	31	23	21	23	1.98
69252--69285	18	2.0	16	88	11	50	17	2	2	76	1.04
74180--74719	110	5.0	110	88	3	751	34	22	17	24	1.96
74180--74719	218	2.5	216	86	4	741	34	22	17	24	1.96
74826--75103	84	3.4	82	75	6	274	31	25	19	24	1.98
74884--75322	219	2.0	219	91	0	718	30	24	19	25	1.98
75103--75718	84	7.5	83	76	6	554	30	25	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75297--75770	164	2.9	164	88	2	673	31	25	18	24	1.97
75109--75619	249	2.1	248	85	3	683	30	24	19	25	1.98
75109--75726	248	2.5	247	82	4	602	30	25	19	24	1.98
78209--78306	5	19.2	5	75	16	69	19	4	3	73	1.13
81390--81474	42	2.0	42	97	0	161	37	9	10	42	1.72
82310--82375	19	3.4	19	75	21	64	40	12	1	45	1.51
87269--87305	15	2.6	15	87	8	51	64	0	0	35	0.94

Tables:   1

The End!