Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007522.1 Hibiscus syriacus cultivar Beakdansim tig00020969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67274

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2777--2801
13
1.9
13
100
0
50
48
0
4
48
1.20
5304--5347
21
2.0
23
86
8
65
47
4
0
47
1.22
5520--5548
14
2.1
14
100
0
58
55
6
0
37
1.27
6517--6545
15
1.9
15
100
0
58
20
13
34
31
1.92
10847--10895
15
2.9
17
79
11
57
26
4
6
63
1.36
15223--15251
13
2.1
14
93
6
51
48
0
0
51
1.00
15276--15319
19
2.2
20
84
4
54
43
0
0
56
0.99
15283--15360
34
2.4
34
75
16
83
41
1
0
57
1.07
18596--18640
19
2.3
20
80
3
56
42
2
0
55
1.12
20730--20773
21
2.0
23
86
8
65
47
4
0
47
1.22
20889--20917
14
2.1
14
100
0
58
55
6
0
37
1.27
26731--26759
13
2.1
14
93
6
51
48
0
0
51
1.00
26784--26827
19
2.2
20
84
4
54
43
0
0
56
0.99
26791--26868
34
2.4
34
75
16
83
41
1
0
57
1.07
30100--30144
19
2.3
20
80
3
56
42
2
0
55
1.12
32232--32275
21
2.0
23
86
8
65
47
4
0
47
1.22
32391--32419
14
2.1
14
100
0
58
55
6
0
37
1.27
43123--43172
2
25.0
2
100
0
100
50
0
50
0
1.00
49746--49782
2
18.5
2
100
0
74
48
0
0
51
1.00
52961--53058
49
2.0
49
93
0
169
27
16
19
36
1.93
55150--55193
16
2.6
17
85
7
54
47
0
0
52
1.00
55557--55617
13
4.8
13
72
25
51
52
1
0
45
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55544--55633
36
2.5
37
79
16
102
53
1
0
45
1.07
56203--56253
26
2.0
26
96
0
93
27
5
15
50
1.67
56288--56342
26
2.1
26
86
0
74
29
1
18
50
1.57
56779--56823
23
1.9
24
86
4
65
20
2
13
64
1.38
58465--58502
15
2.4
17
78
13
53
26
5
5
63
1.37
62782--62810
13
2.1
14
93
6
51
48
0
0
51
1.00
62792--62855
26
2.5
26
73
19
62
45
1
1
51
1.20
62835--62878
19
2.2
20
84
4
54
43
0
0
56
0.99
63133--63157
13
1.9
13
100
0
50
48
0
4
48
1.20
65859--65946
44
2.0
44
88
4
133
26
15
18
39
1.90

Tables:   1

The End!