genome.fa.s7523.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007523.1 Hibiscus syriacus cultivar Beakdansim tig00020977_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117890

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5532--5580	20	2.5	20	86	3	64	30	12	4	53	1.57
6065--6105	3	13.7	3	90	10	66	0	34	0	65	0.93
9671--9794	42	3.0	42	84	7	137	30	20	16	31	1.95
10717--10751	18	1.9	18	88	0	52	42	11	2	42	1.55
14495--14905	222	1.8	222	87	2	606	38	11	16	33	1.85
15089--15633	200	2.7	199	85	4	677	34	13	13	38	1.85
15628--15678	20	2.5	20	87	0	66	39	17	9	33	1.83
18021--18063	20	2.2	20	95	0	77	25	11	20	41	1.86
18425--18479	20	2.8	20	83	2	58	25	12	12	49	1.76
18536--19316	200	3.9	199	82	5	850	33	12	13	40	1.82
18574--19305	399	1.8	398	81	6	926	32	12	13	40	1.83
21327--21356	15	2.0	15	93	0	51	50	13	10	26	1.73
22659--22688	15	2.0	15	93	0	51	13	30	26	30	1.94
25888--25925	18	2.1	19	85	5	51	26	18	0	55	1.43
29736--29799	18	3.6	18	86	0	83	32	6	32	28	1.82
30295--31524	200	6.1	197	82	5	1278	33	11	14	39	1.83
30295--31380	399	2.7	394	85	3	1389	33	12	14	39	1.84
31428--31467	21	2.0	19	85	9	53	25	15	15	45	1.84
36450--37237	414	1.9	412	84	5	1074	38	10	8	42	1.70
39330--39425	20	4.7	21	92	3	160	28	17	34	19	1.95
39330--39425	41	2.3	41	96	0	174	28	17	34	19	1.95
39488--39545	21	2.8	21	97	0	107	25	18	34	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39625--39682	30	2.0	29	90	10	91	44	17	5	32	1.70
39625--39684	29	2.0	30	93	6	104	43	16	6	33	1.74
40960--41007	19	2.5	20	82	3	62	29	12	6	52	1.63
42301--42396	20	4.7	21	89	3	151	28	16	34	20	1.95
42301--42396	41	2.3	41	94	0	165	28	16	34	20	1.95
42459--42516	21	2.8	21	97	0	107	25	18	34	20	1.96
42596--42653	30	2.0	29	90	10	91	44	17	5	32	1.70
42596--42655	29	2.0	30	93	6	104	43	16	6	33	1.74
47702--47778	40	1.9	40	81	0	91	28	18	12	40	1.87
47727--47778	20	2.6	21	87	9	81	23	17	13	46	1.83
49120--49176	25	2.3	26	78	6	64	38	7	8	45	1.62
51680--51716	2	18.5	2	100	0	74	51	0	48	0	1.00
53652--53710	16	3.5	16	73	13	64	10	25	25	38	1.87
53651--53729	7	11.3	7	68	24	51	7	24	25	43	1.80
53651--53735	35	2.4	35	94	0	143	9	24	24	41	1.84
67012--67073	25	2.4	27	76	17	69	48	0	4	46	1.23
67061--67141	18	3.9	21	78	12	78	39	2	0	58	1.12
67075--67141	22	3.0	22	80	10	82	40	1	0	58	1.07
67069--67130	24	2.6	25	81	16	71	40	3	0	56	1.15
67554--67604	2	25.5	2	100	0	102	49	0	0	50	1.00
67846--67890	20	2.2	20	96	0	81	42	13	4	40	1.64
69568--69618	21	2.4	22	86	3	68	23	21	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71735--71825	31	3.0	31	95	3	159	34	6	16	42	1.74
72005--72046	21	2.0	21	95	0	75	23	21	28	26	1.99
72329--72398	34	2.1	32	89	5	104	31	15	31	21	1.95
81093--81141	23	2.1	23	88	7	73	57	12	2	28	1.46
84371--84414	20	2.2	20	87	0	61	63	0	20	15	1.31
84357--84436	26	3.1	25	71	16	74	61	0	21	17	1.35
84707--84740	5	6.8	5	96	0	59	82	0	2	14	0.79
90236--90357	50	2.6	45	80	10	136	31	20	6	40	1.78
95464--95494	14	2.2	14	100	0	62	29	25	6	38	1.81
95780--95897	47	2.4	49	82	8	136	31	20	7	40	1.80
100982--101030	23	2.1	23	88	7	73	57	12	2	28	1.46
107850--107935	36	2.4	36	92	0	136	37	23	22	17	1.94
109104--109309	35	5.8	35	83	2	268	36	18	24	20	1.95
109098--109309	71	3.0	71	93	1	354	37	18	24	19	1.94
111153--111177	12	2.1	12	100	0	50	68	0	0	32	0.90
111160--111198	19	2.2	17	86	9	51	69	0	5	25	1.09
111919--112096	85	2.1	85	88	7	263	54	12	2	30	1.52
112593--112627	15	2.3	15	100	0	70	48	0	20	31	1.50
112994--113075	37	2.2	35	81	10	92	23	12	9	54	1.66
115967--116076	5	21.8	5	69	15	66	72	0	4	22	1.02
115964--116012	19	2.6	20	81	12	59	77	0	2	20	0.87
116020--116076	11	4.8	11	72	16	51	77	0	5	17	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116021--116078	17	3.0	21	69	23	63	75	0	6	17	1.01

Tables:   1

The End!