genome.fa.s7524.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007524.1 Hibiscus syriacus cultivar Beakdansim tig00020979_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70398

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4093--4136	18	2.4	18	92	0	70	27	9	0	63	1.24
14628--15102	49	9.8	49	82	1	578	29	22	14	33	1.94
14624--15125	98	5.2	98	93	0	794	29	22	14	33	1.94
19715--20919	98	12.3	98	89	0	1780	30	22	13	34	1.92
21276--21322	18	2.6	18	93	0	85	27	25	6	40	1.80
23538--23642	17	6.1	17	76	11	97	40	9	10	39	1.72
23538--23637	35	2.9	35	76	11	107	42	9	11	38	1.72
24413--24475	33	1.9	32	90	3	99	30	0	0	69	0.88
28644--29611	110	8.8	110	89	1	1383	34	22	17	25	1.96
29735--30500	84	9.2	83	77	4	652	31	24	19	24	1.98
29823--30486	249	2.7	249	90	0	988	32	24	18	24	1.97
29748--30480	333	2.2	330	79	5	751	32	24	19	24	1.98
29737--30500	165	4.6	164	79	6	671	31	24	19	24	1.98
31356--31390	4	8.8	4	87	0	52	25	2	0	71	1.00
34137--34198	31	2.0	31	100	0	124	25	12	25	35	1.92
38876--38973	20	4.8	20	77	3	88	36	23	18	21	1.95
38817--38973	41	3.9	41	70	11	126	38	25	17	18	1.93
38960--39130	20	8.6	20	84	5	107	35	26	18	20	1.95
38940--39149	60	3.5	58	80	7	208	37	25	17	20	1.94
38994--39149	20	7.8	20	87	4	174	35	25	17	21	1.95
38960--39149	40	4.8	40	86	5	208	36	25	17	20	1.94
39832--39876	23	2.0	23	86	8	65	26	15	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40050--40074	12	2.1	12	100	0	50	72	0	28	0	0.86
42356--42695	19	19.4	19	77	17	380	46	18	20	13	1.83
42384--42676	52	5.6	52	92	5	436	46	17	21	13	1.83
42384--42695	71	4.4	72	81	14	311	46	17	21	14	1.83
42356--42717	52	6.9	51	86	11	292	46	18	21	13	1.83
42442--42676	123	2.0	123	85	9	132	46	18	20	14	1.84
42478--42717	123	2.0	123	96	1	437	45	18	21	14	1.84
42724--42825	19	5.6	19	85	12	151	14	23	17	44	1.86
42932--42968	14	2.6	14	91	0	65	45	21	0	32	1.52
44945--45001	14	3.7	14	77	20	60	45	22	21	10	1.82
44926--45018	33	2.8	33	95	0	168	47	21	20	10	1.80
44889--45023	19	7.6	19	76	16	128	45	23	19	11	1.82
45019--45112	19	5.5	18	78	12	78	7	18	27	46	1.75
45035--45072	14	2.7	14	92	8	60	7	21	28	42	1.81
45063--45128	19	3.4	18	87	2	78	10	18	25	45	1.81
45176--45643	93	5.1	93	98	0	904	46	18	12	22	1.83
47348--47437	14	5.7	14	72	23	72	43	23	24	8	1.82
47340--47454	33	3.5	33	96	0	212	46	20	22	9	1.79
47362--47459	19	5.7	19	70	22	81	44	22	22	10	1.82
47471--47527	14	3.7	14	72	20	51	10	22	22	43	1.84
47485--47573	19	4.9	19	72	15	80	12	22	21	43	1.85
47455--47573	33	3.4	33	86	6	148	10	21	22	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47665--47735	33	2.2	33	94	0	124	47	16	23	11	1.79
47915--47969	22	2.5	22	81	0	74	20	16	40	23	1.91
48116--48309	20	9.6	20	78	5	194	20	20	24	35	1.96
48116--48309	60	3.2	60	82	0	235	20	20	24	35	1.96
48276--48373	20	4.8	20	77	3	79	21	18	23	36	1.95
48276--48373	41	2.4	41	77	6	110	21	18	23	36	1.95
50919--50943	7	3.6	7	100	0	50	56	0	0	44	0.99
52645--52674	12	2.5	12	94	0	51	36	6	6	50	1.55
52900--53011	45	2.5	45	92	0	188	35	9	15	39	1.80
52900--53025	45	2.8	44	84	7	164	34	11	15	39	1.82
52875--53088	45	4.7	45	77	11	130	34	9	15	39	1.81
53264--53485	58	3.8	58	89	0	327	38	6	12	42	1.68
53537--53666	58	2.3	58	79	1	145	38	5	11	44	1.64
53584--53815	96	2.4	96	80	5	254	39	6	10	44	1.63
56924--56958	17	2.1	16	89	5	52	57	2	28	11	1.48
60876--60951	32	2.4	32	86	0	98	31	18	13	36	1.89
64668--64728	29	2.1	29	87	0	86	26	19	4	49	1.69
64803--65055	68	3.8	68	86	3	345	31	24	14	30	1.94
64803--65055	132	1.9	132	86	4	355	31	24	14	30	1.94
65274--65738	59	7.9	59	93	0	752	35	19	12	32	1.90
66153--66248	22	4.5	22	89	2	101	29	23	15	31	1.96
66148--66226	42	1.9	39	82	7	95	27	24	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70302--70339	5	7.2	5	91	8	58	21	76	0	2	0.91

Tables:   1

The End!