Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007526.1 Hibiscus syriacus cultivar Beakdansim tig00020999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 126340
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Found at i:12167 original size:33 final size:31
Alignment explanation
Indices: 12130--12222 Score: 96
Period size: 33 Copynumber: 2.9 Consensus size: 31
12120 GTGTGCGTGA
*
12130 GCCTCGGTCACCATCGTTAATCCCAGGTGGGT
1 GCCTCGGTCACCATCGATAA-CCCAGGTGGGT
* * **
12162 GGCCTCGGTCACCATCGACAAAACCAGACGGGT
1 -GCCTCGGTCACCATCGA-TAACCCAGGTGGGT
* *
12195 GTCTCGGTCACCATCGGTAACCCAGGTG
1 GCCTCGGTCACCATCGATAACCCAGGTG
12223 ATTGGTGTGG
Statistics
Matches: 48, Mismatches: 11, Indels: 4
0.76 0.17 0.06
Matches are distributed among these distances:
31 7 0.15
32 15 0.31
33 24 0.50
34 2 0.04
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (31 bp):
GCCTCGGTCACCATCGATAACCCAGGTGGGT
Found at i:12574 original size:95 final size:95
Alignment explanation
Indices: 12404--12655 Score: 222
Period size: 95 Copynumber: 2.7 Consensus size: 95
12394 ATTGGTATGG
* * * * * * * * * * * *
12404 GAGTTCCGCATAGAACCGAGCATT-GGTGCGGGAGCTTCGGTCACTATCGGCAATCCCCAACGGG
1 GAGTGCCGCACAGAGCCGAGAATTGGGTGCGGGGGCCTCGATCACCATCAGTAACCCCCGACGGG
*
12468 TGCCTCGGTAACCCCATACCACG-GGGACGG
66 TGCCTCGGTAACCCCATACCACGTGGG-CGA
* * ** * *
12498 GAGTGCCGGATAGAGTTGTGAGTTGGGTGCGGGGGCCTC-AGTCACCATCAGTAACCCCCGACGG
1 GAGTGCCGCACAGAGCCGAGAATTGGGTGCGGGGGCCTCGA-TCACCATCAGTAACCCCCGACGG
** * * * *
12562 GTGCCTTTGTAACCCCATGCCATGTGTGTGA
65 GTGCCTCGGTAACCCCATACCACGTGGGCGA
* *
12593 GAGTGTCGCACAGAGCCGAGAATTGGGTGCGGGGGCCTCGATCACCATCAGTAACCCTCGACG
1 GAGTGCCGCACAGAGCCGAGAATTGGGTGCGGGGGCCTCGATCACCATCAGTAACCCCCGACG
12656 TCTGCCTCAA
Statistics
Matches: 123, Mismatches: 31, Indels: 7
0.76 0.19 0.04
Matches are distributed among these distances:
94 16 0.13
95 104 0.85
96 3 0.02
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (95 bp):
GAGTGCCGCACAGAGCCGAGAATTGGGTGCGGGGGCCTCGATCACCATCAGTAACCCCCGACGGG
TGCCTCGGTAACCCCATACCACGTGGGCGA
Found at i:12716 original size:95 final size:96
Alignment explanation
Indices: 12520--12707 Score: 233
Period size: 95 Copynumber: 2.0 Consensus size: 96
12510 GAGTTGTGAG
* *** *
12520 TTGGGTGCGGGGGCCTC-AGTCACCATCAGTAACCCCCGACGGGTGCCTTTGTAACCCCATGCCA
1 TTGGGTGCGGGGGCCTCGAGTCACCATCAGTAACCCCCGACGGCTGCCTTCAAAACCCCAGGCCA
* *
12584 TGTGTGTGAGAGTGTCGCACAGAGCCGAGAA
66 TGTGTGTGAGAGTGCCGCACAGAACCGAGAA
* *
12615 TTGGGTGCGGGGGCCTCGA-TCACCATCAGTAACCCTCGACGTCTGCC-TCAAAATCCCCAGGCC
1 TTGGGTGCGGGGGCCTCGAGTCACCATCAGTAACCCCCGACGGCTGCCTTCAAAA-CCCCAGGCC
12678 AT-TCGTGT-AGGAGTGCCGCACAGAACCGAG
65 ATGT-GTGTGA-GAGTGCCGCACAGAACCGAG
12708 CGATGGGTGT
Statistics
Matches: 80, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
94 5 0.06
95 74 0.93
96 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (96 bp):
TTGGGTGCGGGGGCCTCGAGTCACCATCAGTAACCCCCGACGGCTGCCTTCAAAACCCCAGGCCA
TGTGTGTGAGAGTGCCGCACAGAACCGAGAA
Found at i:17505 original size:19 final size:19
Alignment explanation
Indices: 17481--17517 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
17471 ACTCATTTAT
17481 GCACTATATATTATTATGA
1 GCACTATATATTATTATGA
17500 GCACTATATATTATTATG
1 GCACTATATATTATTATG
17518 CACCAACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (19 bp):
GCACTATATATTATTATGA
Found at i:17520 original size:17 final size:17
Alignment explanation
Indices: 17477--17520 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 17
17467 ATTTACTCAT
17477 TTATGCACTATATATTA
1 TTATGCACTATATATTA
17494 TTATGAGCACTATATATTA
1 TTAT--GCACTATATATTA
17513 TTATGCAC
1 TTATGCAC
17521 CAACATGTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.32
19 17 0.68
ACGTcount: A:0.34, C:0.14, G:0.09, T:0.43
Consensus pattern (17 bp):
TTATGCACTATATATTA
Found at i:17880 original size:18 final size:18
Alignment explanation
Indices: 17851--17893 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
17841 CAAAGTTGCC
*
17851 AGCTGACACCAAGCTCAT
1 AGCTGACACCAAGCCCAT
* *
17869 AGTTGACCCCAAGCCCAT
1 AGCTGACACCAAGCCCAT
17887 AGCTGAC
1 AGCTGAC
17894 TTGAGCTGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.30, C:0.35, G:0.19, T:0.16
Consensus pattern (18 bp):
AGCTGACACCAAGCCCAT
Found at i:22709 original size:2 final size:2
Alignment explanation
Indices: 22702--22731 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22692 GTTTAAACAA
22702 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22732 GTTTATATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24166 original size:3 final size:3
Alignment explanation
Indices: 24152--24230 Score: 92
Period size: 3 Copynumber: 27.0 Consensus size: 3
24142 TTTGTATCTG
** *
24152 TAA TAA -AA TAA TAA TAA TAA TAA TAA T-A TTT TAT TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
24198 TAA TAA TAG TAA TAA TAA TAA TAAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA
24231 AAAAACCAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
2 6 0.09
3 58 0.87
4 3 0.04
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:24910 original size:113 final size:113
Alignment explanation
Indices: 24691--25592 Score: 1305
Period size: 113 Copynumber: 8.0 Consensus size: 113
24681 GATAGAGTCA
* * * * * *
24691 AGCAAAAGGTTGAACAAGTTCTTATTATTATGAACTTCTT-TTTCTTCTTCAGATAAGTTGTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * *
24755 CATTATGAACTTTCTCTGGAAAAGTTAATCCATCGAGTGATGAATTCG
66 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
* ** *
24803 AGCAAAAGGTTAAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * * * * **
24868 CATTATTAACTCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCA
66 CATTATGAACT-TTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
* ** *
24916 AACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTGAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * *
24981 TATTATGAACTTTCTCTGGAAAAGCTGATACATCAAGTGATGGATTTG
66 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
*
25029 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
*
25094 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTG
66 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
25142 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * * **
25207 CATTATGAAC--TCTACATGGCAATGTTGATCCATCAAGTGATGAATTCA
66 CATTATGAACTTTCT-C-TGGAAAAGTTGATCCATCAAGTGATGGATTTG
* **
25255 AACAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
25320 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
66 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
* *
25368 AGCAAAAGCTTGAACAAGCTCTTCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
*
25433 CATTATGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTG
66 CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
*
25481 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTTTTCAGATGAGTTCTTCT
1 AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* * *
25546 CATTATGAACTCTT-TCTGGAAATGTTTATCCAT--TGTGATGGATTTG
66 CATTATGAACT-TTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
25592 A
1 A
25593 ATCTTTGCTA
Statistics
Matches: 716, Mismatches: 66, Indels: 17
0.90 0.08 0.02
Matches are distributed among these distances:
111 16 0.02
112 38 0.05
113 654 0.91
114 5 0.01
115 3 0.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (113 bp):
AGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
CATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTG
Found at i:25022 original size:226 final size:226
Alignment explanation
Indices: 24574--25578 Score: 1315
Period size: 226 Copynumber: 4.4 Consensus size: 226
24564 GAATTAAGGC
* *
24574 AAGGTTGAACAAATTCTTCTCATTATGAATTTCTTC-TCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
** * * * *
24638 TGAACACT-TCTGGAAATGTTGATGCTGAT-ATATCTCCTTCTGTGATAGAGTCAAGCAAAAGGT
66 TGAACTTTCTCTGGAAAAGTTGAT-C-CATCA-A---------GTGATGGATTCAAGCAAAAGGT
* * * * * *
24701 TGAACAAGTTCTTATTATTATGAACTTCTT-TTTCTTCTTCAGATAAGTTGTTCTCATTATGAAC
119 TGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC
* * *
24765 TTTCTCTGGAAAAGTTAATCCATCGAGTGATGAATTCGAGCAA
184 TTTCTCTGGAAAAGCTGATCCATCAAGTGATGAATTCGAGCAA
* * *
24808 AAGGTTAAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* * * * * * * **
24873 TTAACTCTAC-CTGGCAATGTTGATCCATCAAATGATGAATTCAAACAAAAGGTTGAACAAATTC
66 TGAACT-TTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTCAAGCAAAAGGTTGAACAAGCTC
* *
24937 TTCTCATTATGAACTTCTTCTTCCTTCTTGAGATGAGTTCTTCTTATTATGAACTTTCTCTGGAA
130 TTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAA
* * *
25002 AAGCTGATACATCAAGTGATGGATTTGAGCAA
195 AAGCTGATCCATCAAGTGATGAATTCGAGCAA
* *
25034 AAGGTTGAACAAGCTCTTCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* **
25099 TGAACTTTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCT
66 TGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTCAAGCAAAAGGTTGAACAAGCTCT
*
25164 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC--TCTACATGGC
131 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT-C-TGGA
* * * *
25227 AATGTTGATCCATCAAGTGATGAATTCAAACAA
194 AAAGCTGATCCATCAAGTGATGAATTCGAGCAA
*
25260 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
** *
25325 TGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAGCAAAAGCTTGAACAAGCTCT
66 TGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTCAAGCAAAAGGTTGAACAAGCTCT
*
25390 TCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
131 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
* *
25455 AGCTGATCCATCAAGTGATGGATTTGAGCAA
196 AGCTGATCCATCAAGTGATGAATTCGAGCAA
* *
25486 AAGGTTGAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTTTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* *
25551 TGAACTCTT-TCTGGAAATGTTTATCCAT
66 TGAACT-TTCTCTGGAAAAGTTGATCCAT
25579 TGTGATGGAT
Statistics
Matches: 689, Mismatches: 71, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
224 3 0.00
225 47 0.07
226 548 0.80
227 3 0.00
228 3 0.00
234 38 0.06
235 34 0.05
236 13 0.02
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (226 bp):
AAGGTTGAACAAACTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
TGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTCAAGCAAAAGGTTGAACAAGCTCT
TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
AGCTGATCCATCAAGTGATGAATTCGAGCAA
Found at i:25107 original size:339 final size:339
Alignment explanation
Indices: 24574--25578 Score: 1530
Period size: 339 Copynumber: 2.9 Consensus size: 339
24564 GAATTAAGGC
*
24574 AAGGTTGAACAAATTCTTCTCATTATGAATTTCTTC-TCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
** * ** * * **
24638 TGAACACT-TCTGGAAATGTTGATGCTGATATATCTCCTTCTGTGATAGAGTCAAGCAAAAGGTT
66 TGAACTTTCTCTGGAAA-----A-GCTGATACA--T-C--AAGTGATGGATTTGAGCAAAAGGTT
* * * * * *
24702 GAACAAGTTCTTATTATTATGAACTTCTT-TTTCTTCTTCAGATAAGTTGTTCTCATTATGAACT
120 GAACAAGCTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
* * * * * * **
24766 TTCTCTGGAAAAGTTAATCCATCGAGTGATGAATTCGAGCAAAAGGTTAAACAAATTCTTCTCAT
185 TTCTCTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCAT
* *
24831 TATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATTAACTCTACCTGGCAATGTTGA
250 TATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGA
24896 TCCATCAAATGATGAATTCAAACAA
315 TCCATCAAATGATGAATTCAAACAA
* *
24921 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTGAGATGAGTTCTTCTTATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
24986 TGAACTTTCTCTGGAAAAGCTGATACATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCT
66 TGAACTTTCTCTGGAAAAGCTGATACATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCT
*
25051 TCTCATTATGAACTTATTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
131 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
25116 AGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCT
196 AGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCT
* *
25181 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACATGGCAATGTTGATCCATCAAGTG
261 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATG
25246 ATGAATTCAAACAA
326 ATGAATTCAAACAA
25260 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
1 AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
* * *
25325 TGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAGCAAAAGCTTGAACAAGCTCT
66 TGAACTTTCTCTGGAAAAGCTGATACATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCT
*
25390 TCTCATTATGAAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
131 TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
25455 AGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCT
196 AGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCT
* ** * *
25520 TCTTCCTTTTTCAGATGAGTTCTTCTCATTATGAACTCTTTCTGGAAATGTTTATCCAT
261 TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCAT
25579 TGTGATGGAT
Statistics
Matches: 611, Mismatches: 44, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
338 44 0.07
339 481 0.79
340 1 0.00
341 1 0.00
343 8 0.01
344 1 0.00
347 35 0.06
348 32 0.05
349 8 0.01
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (339 bp):
AAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTA
TGAACTTTCTCTGGAAAAGCTGATACATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCT
TCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAA
AGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAGCTCTTCTCATTATGAACTTCT
TCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCTACCTGGCAATGTTGATCCATCAAATG
ATGAATTCAAACAA
Found at i:27420 original size:75 final size:75
Alignment explanation
Indices: 27321--27540 Score: 305
Period size: 75 Copynumber: 2.9 Consensus size: 75
27311 GATATGGGCC
27321 TTCAGCATGCCCCAACAATTGCTGATACGAACGTTCAAAATACATCAACATTCTTGATTCTGATT
1 TTCAGCATGCCCCAACAATTGCTGATACGAACGTTCAAAATACATCAACATTCTTGATTCTGATT
*
27386 GAAATAGGCT
66 GAAAGAGGCT
* *
27396 TTCAGCATGCCCCATCAATTGCTGATACGAACGTTCAAAATACATCAACATTCTTCATTCTGATT
1 TTCAGCATGCCCCAACAATTGCTGATACGAACGTTCAAAATACATCAACATTCTTGATTCTGATT
* *
27461 AAAAGGGGCT
66 GAAAGAGGCT
* * * ** * ** *
27471 TTCAGCATGACCCAGCATTTTGCTGATATAAACATTCAGGATACATCAACATTCCTGATTCTGAT
1 TTCAGCATGCCCCAACA-ATTGCTGATACGAACGTTCAAAATACATCAACATTCTTGATTCTGAT
27536 TGAAA
65 TGAAA
27541 AGGGTTTTTA
Statistics
Matches: 128, Mismatches: 16, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
75 85 0.66
76 43 0.34
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.30
Consensus pattern (75 bp):
TTCAGCATGCCCCAACAATTGCTGATACGAACGTTCAAAATACATCAACATTCTTGATTCTGATT
GAAAGAGGCT
Found at i:30952 original size:2 final size:2
Alignment explanation
Indices: 30945--30970 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
30935 ACAACAAAGG
30945 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
30971 TTAAAAGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32614 original size:12 final size:12
Alignment explanation
Indices: 32593--32653 Score: 59
Period size: 12 Copynumber: 4.8 Consensus size: 12
32583 AATTATGTAA
* *
32593 AAATGAAAATGT
1 AAATGTAAATGC
*
32605 AAATGTAAATAC
1 AAATGTAAATGC
*
32617 AAACGTAAAAAATGC
1 AAATGT---AAATGC
32632 AAATGTAAATGC
1 AAATGTAAATGC
32644 AAATGTAAAT
1 AAATGTAAAT
32654 ATTTGAATGT
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
12 30 0.75
15 10 0.25
ACGTcount: A:0.57, C:0.07, G:0.13, T:0.23
Consensus pattern (12 bp):
AAATGTAAATGC
Found at i:32635 original size:27 final size:27
Alignment explanation
Indices: 32598--32652 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
32588 TGTAAAAATG
*
32598 AAAATGTAAATGTAAATACAAACGTAA
1 AAAATGCAAATGTAAATACAAACGTAA
* *
32625 AAAATGCAAATGTAAATGCAAATGTAA
1 AAAATGCAAATGTAAATACAAACGTAA
32652 A
1 A
32653 TATTTGAATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.58, C:0.07, G:0.13, T:0.22
Consensus pattern (27 bp):
AAAATGCAAATGTAAATACAAACGTAA
Found at i:32746 original size:7 final size:7
Alignment explanation
Indices: 32712--32753 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
32702 ATAAATGTAT
32712 AAATGCA
1 AAATGCA
* *
32719 CAATGAA
1 AAATGCA
32726 AAATGCA
1 AAATGCA
32733 AAGATGCA
1 AA-ATGCA
32741 AAATGC-
1 AAATGCA
32747 AAATGCA
1 AAATGCA
32754 TGTATGAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 6 0.21
7 16 0.55
8 7 0.24
ACGTcount: A:0.55, C:0.14, G:0.17, T:0.14
Consensus pattern (7 bp):
AAATGCA
Found at i:34288 original size:15 final size:15
Alignment explanation
Indices: 34268--34305 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
34258 ATCCTAACCT
34268 CATGCTTTCTAGTTC
1 CATGCTTTCTAGTTC
34283 CATGCTTTCTAGTTC
1 CATGCTTTCTAGTTC
34298 CATGCTTT
1 CATGCTTT
34306 GTTTGGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.13, C:0.26, G:0.13, T:0.47
Consensus pattern (15 bp):
CATGCTTTCTAGTTC
Found at i:35400 original size:39 final size:38
Alignment explanation
Indices: 35346--35419 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 38
35336 AGAAATTTAA
* * *
35346 AAATTTGAAGATATATTTAATTTATA-ATATTGTTATTTC
1 AAATTTAAAAATATA-TTAATATATATATATT-TTATTTC
35385 AAATTTAAAAATATATTAATATATATATATTTTAT
1 AAATTTAAAAATATATTAATATATATATATTTTAT
35420 AAATAAGATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 13 0.42
39 18 0.58
ACGTcount: A:0.45, C:0.01, G:0.04, T:0.50
Consensus pattern (38 bp):
AAATTTAAAAATATATTAATATATATATATTTTATTTC
Found at i:35657 original size:2 final size:2
Alignment explanation
Indices: 35650--35675 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
35640 GTTTAAACAA
35650 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
35676 GTTTATATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37148 original size:3 final size:3
Alignment explanation
Indices: 37124--37227 Score: 106
Period size: 3 Copynumber: 35.0 Consensus size: 3
37114 TTTGTATATG
* ** *
37124 TAA TAA -AA TAA TAAA TAT TAA TAA TAA TAA TAA T-A TTT TAT TAA
1 TAA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * *
37168 TAA TAA TAA TAA TAG TGA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
37217 TAA -AA TAA TAA
1 TAA TAA TAA TAA
37228 AAAAACCAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 10
0.80 0.10 0.09
Matches are distributed among these distances:
2 6 0.07
3 73 0.86
4 6 0.07
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:37902 original size:8 final size:8
Alignment explanation
Indices: 37889--37918 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
37879 TCGGCCACGG
37889 CGGTGCAT
1 CGGTGCAT
37897 CGGTGCAT
1 CGGTGCAT
37905 CGGTGCAT
1 CGGTGCAT
37913 CGGTGC
1 CGGTGC
37919 CCTATCAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.10, C:0.27, G:0.40, T:0.23
Consensus pattern (8 bp):
CGGTGCAT
Found at i:40776 original size:32 final size:32
Alignment explanation
Indices: 40699--40803 Score: 129
Period size: 32 Copynumber: 3.2 Consensus size: 32
40689 GTGCGGGAGC
* * * *
40699 CTCGGTCACCATTGGTAATCCTAGGCAGGTGT
1 CTCGGTCACCATCGGTAAACCCAGACAGGTGT
* * *
40731 CCTCGGTCTCCATCGGCAAACCCAGACGGGTGT
1 -CTCGGTCACCATCGGTAAACCCAGACAGGTGT
*
40764 CTCGGTCACCATCGGTAAGCCCAGACAGGTGT
1 CTCGGTCACCATCGGTAAACCCAGACAGGTGT
40796 CTCGGTCA
1 CTCGGTCA
40804 GTATCGACAA
Statistics
Matches: 61, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
32 36 0.59
33 25 0.41
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.22
Consensus pattern (32 bp):
CTCGGTCACCATCGGTAAACCCAGACAGGTGT
Found at i:40962 original size:95 final size:95
Alignment explanation
Indices: 40812--41077 Score: 363
Period size: 95 Copynumber: 2.8 Consensus size: 95
40802 CAGTATCGAC
* * *
40812 AACCCCCGACGGGTTCCT-TGACAACCCCAGGCCACGGGTGCGGGAGTGCCACACAGAGCCGAGA
1 AACCCCCGACGGGTGCCTCAG-CAACCCCAGGCCACGGGTGCGGGAGAGCCACACAGAGCCGAGA
40876 GTTGGGTGCGGGGACCTCGGTCACCATCGGT
65 GTTGGGTGCGGGGACCTCGGTCACCATCGGT
* * *
40907 AACCCCCGACGGGTGCCTCAGCAATCCCAGGCCACGGGTGCGAGAGAGCCGCACAGAGCCGAGAG
1 AACCCCCGACGGGTGCCTCAGCAACCCCAGGCCACGGGTGCGGGAGAGCCACACAGAGCCGAGAG
* *
40972 TTGGGTACGGGGGCCTCGGTCACCATCGGT
66 TTGGGTGCGGGGACCTCGGTCACCATCGGT
* * ** * * * *
41002 AACCCCCGACGGGTGCCTCGGCAACCCCAGTCCATTGGTGCGGGAAATCCACACAGAACCGAGCG
1 AACCCCCGACGGGTGCCTCAGCAACCCCAGGCCACGGGTGCGGGAGAGCCACACAGAGCCGAGAG
*
41067 CTGGGTGCGGG
66 TTGGGTGCGGG
41078 AGCCTTGCAC
Statistics
Matches: 149, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
95 148 0.99
96 1 0.01
ACGTcount: A:0.20, C:0.33, G:0.35, T:0.12
Consensus pattern (95 bp):
AACCCCCGACGGGTGCCTCAGCAACCCCAGGCCACGGGTGCGGGAGAGCCACACAGAGCCGAGAG
TTGGGTGCGGGGACCTCGGTCACCATCGGT
Found at i:45284 original size:162 final size:159
Alignment explanation
Indices: 44997--45317 Score: 599
Period size: 162 Copynumber: 2.0 Consensus size: 159
44987 GAATCACGCC
44997 AAGGAATTAGAATGAAAAGGTGGCGTGTCTTGTCCCCCCCGTCACGGTGTGCGTGCGGCATAGAT
1 AAGGAATTAGAATGAAAAGGTGGCGTGTCTTGTCCCCCCCGTCACGGTGTGCGTGCGGCATAGAT
45062 ACGCCTGCTTTATCGTGAGAAACACAAAAACGACTCTCGGCAACGGATATCTCGACTCTCGCATC
66 ACGCCTGCTTTATCGTGAGAAACACAAAAACGACTCTCGGCAACGGATATCTCGACTCTCGCATC
45127 GATGAAGAACGTAGCGAAATGCGATACTT
131 GATGAAGAACGTAGCGAAATGCGATACTT
45156 AAGGAATTAGAATGAAAAGGTGGCCGTGTCTTGTCCCCGCCCCGTTCACGGTGTGCGTGCGGCAT
1 AAGGAATTAGAATGAAAAGGTGG-CGTGTCTTGT-CCC-CCCCG-TCACGGTGTGCGTGCGGCAT
45221 AGATACGCCTGCTTTATCGTGA-AAACACAAAAACGACTCTCGGCAACGGATATCTCGACTCTCG
62 AGATACGCCTGCTTTATCGTGAGAAACACAAAAACGACTCTCGGCAACGGATATCTCGACTCTCG
45285 CATCGATGAAGAACGTAGCGAAATGCGATACTT
127 CATCGATGAAGAACGTAGCGAAATGCGATACTT
45318 GGTGTGAATT
Statistics
Matches: 158, Mismatches: 0, Indels: 5
0.97 0.00 0.03
Matches are distributed among these distances:
159 23 0.15
160 10 0.06
161 3 0.02
162 80 0.51
163 42 0.27
ACGTcount: A:0.28, C:0.24, G:0.26, T:0.22
Consensus pattern (159 bp):
AAGGAATTAGAATGAAAAGGTGGCGTGTCTTGTCCCCCCCGTCACGGTGTGCGTGCGGCATAGAT
ACGCCTGCTTTATCGTGAGAAACACAAAAACGACTCTCGGCAACGGATATCTCGACTCTCGCATC
GATGAAGAACGTAGCGAAATGCGATACTT
Found at i:49956 original size:21 final size:21
Alignment explanation
Indices: 49932--50006 Score: 132
Period size: 21 Copynumber: 3.6 Consensus size: 21
49922 ACTAAGTAGC
49932 ATCGATACTGATTCAATCAGT
1 ATCGATACTGATTCAATCAGT
*
49953 ATCGATATTGATTCAATCAGT
1 ATCGATACTGATTCAATCAGT
*
49974 ATCGATATTGATTCAATCAGT
1 ATCGATACTGATTCAATCAGT
49995 ATCGATACTGAT
1 ATCGATACTGAT
50007 GAGGTAGTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 52 1.00
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (21 bp):
ATCGATACTGATTCAATCAGT
Found at i:50036 original size:20 final size:20
Alignment explanation
Indices: 50013--50062 Score: 100
Period size: 20 Copynumber: 2.5 Consensus size: 20
50003 TGATGAGGTA
50013 GTATCGATACTATGGTAAGG
1 GTATCGATACTATGGTAAGG
50033 GTATCGATACTATGGTAAGG
1 GTATCGATACTATGGTAAGG
50053 GTATCGATAC
1 GTATCGATAC
50063 CAAGCAACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (20 bp):
GTATCGATACTATGGTAAGG
Found at i:50672 original size:79 final size:79
Alignment explanation
Indices: 50564--51019 Score: 660
Period size: 79 Copynumber: 5.8 Consensus size: 79
50554 GAACAAACGA
* * *
50564 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGTTAAAATGAATATG
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
* *
50629 GATGTATTATCGGC
66 GGTGCATTATCGGC
* * *
50643 ATAAAAGAATAATGTATATGGGTGCATTATTGGCATGAAAGGATGCCATAGCTGAATTGCATATG
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
*
50708 GGTGCATTATCGAC
66 GGTGCATTATCGGC
* * * * * * *
50722 ATAAAATAATAATGAATATGGGTGCATTATTGGCATGAAATGATGTCATAGTTGAATTGCATATG
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
*
50787 GGTGCATTATCGAC
66 GGTGCATTATCGGC
* * *
50801 ATAAAATAATAATGCATATGGGTACATTATTGACATGAAAGGATGCCGTAGCTGAAATGCATATG
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
*
50866 GGTGCATTATTGGC
66 GGTGCATTATCGGC
* * * * *
50880 ATAAAAGAATAATGCATATGGGTGCATTATTTGCATGAAAGGATGTCATAGCTAAAATGTATATG
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
50945 GGTGCATTATCGGC
66 GGTGCATTATCGGC
* *
50959 ATAAAAGAATAATGCATATGGGTATATTACTGGCATGAAAGGATGCCATAGCTGAAATGCA
1 ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCA
51020 GGACAAATAT
Statistics
Matches: 337, Mismatches: 40, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 337 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (79 bp):
ATAAAAGAATAATGCATATGGGTACATTATTGGCATGAAAGGATGCCATAGCTGAAATGCATATG
GGTGCATTATCGGC
Found at i:50875 original size:45 final size:42
Alignment explanation
Indices: 50811--50954 Score: 126
Period size: 45 Copynumber: 3.5 Consensus size: 42
50801 ATAAAATAAT
*
50811 AATGCATATGGGTACATTATTGACATGAAAGGATGCCGTAGCTGA
1 AATGCATATGGGTGCATTATTG-CATGAAAGGATG-CGTAGCT-A
*
50856 AATGCATATGGGTGCATTATTGGCAT-AAA--A---G-A-AT-
1 AATGCATATGGGTGCATTATT-GCATGAAAGGATGCGTAGCTA
*
50890 AATGCATATGGGTGCATTATTTGCATGAAAGGATGTCATAGCTAA
1 AATGCATATGGGTGCATTA-TTGCATGAAAGGATG-CGTAGCT-A
*
50935 AATGTATATGGGTGCATTAT
1 AATGCATATGGGTGCATTAT
50955 CGGCATAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 27
0.72 0.04 0.24
Matches are distributed among these distances:
34 23 0.28
35 5 0.06
36 1 0.01
37 2 0.02
38 1 0.01
42 2 0.02
43 1 0.01
44 4 0.05
45 41 0.51
46 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.31
Consensus pattern (42 bp):
AATGCATATGGGTGCATTATTGCATGAAAGGATGCGTAGCTA
Found at i:51478 original size:29 final size:30
Alignment explanation
Indices: 51446--51502 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
51436 TATGTTAATT
*
51446 AGATGAAAAGTTAAATACTGTT-AGGTAAA
1 AGATGAAAAGTTAAACACTGTTGAGGTAAA
**
51475 AGATGAACGGTTAAACACTGTTGAGGTA
1 AGATGAAAAGTTAAACACTGTTGAGGTA
51503 TGATGGGCAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 19 0.79
30 5 0.21
ACGTcount: A:0.42, C:0.07, G:0.25, T:0.26
Consensus pattern (30 bp):
AGATGAAAAGTTAAACACTGTTGAGGTAAA
Found at i:55629 original size:13 final size:13
Alignment explanation
Indices: 55611--55635 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55601 CTTGATCGAA
55611 TAAAAATAAAAAG
1 TAAAAATAAAAAG
55624 TAAAAATAAAAA
1 TAAAAATAAAAA
55636 TTTAACGGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (13 bp):
TAAAAATAAAAAG
Found at i:64945 original size:26 final size:26
Alignment explanation
Indices: 64909--64974 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 26
64899 GTTCACGTCG
* * * *
64909 CACACCGAAACACCTTGTTAATGTAA
1 CACACCAAAACACATCGTTAATGCAA
** *
64935 CACATTAAAACATATCGTTAATGCAA
1 CACACCAAAACACATCGTTAATGCAA
64961 CACACCAAAACACA
1 CACACCAAAACACA
64975 CCATTAATTA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.45, C:0.27, G:0.08, T:0.20
Consensus pattern (26 bp):
CACACCAAAACACATCGTTAATGCAA
Found at i:66227 original size:35 final size:35
Alignment explanation
Indices: 66178--66251 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
66168 ACACATCCTC
66178 AATTACATTCTAAACCCTAAATTCCAAAATAATTT
1 AATTACATTCTAAACCCTAAATTCCAAAATAATTT
* * * *
66213 AATTATATTTTAAACCCTAAATTCTAAAATACTTT
1 AATTACATTCTAAACCCTAAATTCCAAAATAATTT
66248 AATT
1 AATT
66252 TAGGGTTTAG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.39
Consensus pattern (35 bp):
AATTACATTCTAAACCCTAAATTCCAAAATAATTT
Found at i:66320 original size:35 final size:35
Alignment explanation
Indices: 66250--66322 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
66240 AATACTTTAA
* *
66250 TTTAGGGTTTAGAATATAATTGAAGTATTTTGAAT
1 TTTAGGGTTTAGAATATAATTAAAGTATTTGGAAT
* *
66285 TTTA-GGTTTAGAATGTAATTAAAGTGTTTAGGAAT
1 TTTAGGGTTTAGAATATAATTAAAGTATTT-GGAAT
66320 TTT
1 TTT
66323 GAACATGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
34 22 0.67
35 11 0.33
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (35 bp):
TTTAGGGTTTAGAATATAATTAAAGTATTTGGAAT
Found at i:72634 original size:24 final size:24
Alignment explanation
Indices: 72607--72668 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
72597 TACCCCATAT
* *
72607 TAATAAAAAAATATTTTAACATTA
1 TAATAAAAAAATATTTTAAAACTA
* *
72631 TAATTAAAAATAGATTTTAAAACTA
1 TAA-TAAAAAAATATTTTAAAACTA
*
72656 TATTAAAAAAATA
1 TAATAAAAAAATA
72669 ATATTTATCT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 11 0.37
25 19 0.63
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.35
Consensus pattern (24 bp):
TAATAAAAAAATATTTTAAAACTA
Found at i:74724 original size:61 final size:61
Alignment explanation
Indices: 74629--74748 Score: 204
Period size: 61 Copynumber: 2.0 Consensus size: 61
74619 CATCGTAATG
* *
74629 CTATGACACATAAGTTCGTGCACACCACCTGCACTAAGTGTCTTGGGTATACACACTAGTA
1 CTATGACAAATAAGGTCGTGCACACCACCTGCACTAAGTGTCTTGGGTATACACACTAGTA
* *
74690 CTATGACAAATAAGGTCGTGCCCACCACCTGCACTAAGTGTCTTGGGTATACACTCTAG
1 CTATGACAAATAAGGTCGTGCACACCACCTGCACTAAGTGTCTTGGGTATACACACTAG
74749 AGTTAATCCG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (61 bp):
CTATGACAAATAAGGTCGTGCACACCACCTGCACTAAGTGTCTTGGGTATACACACTAGTA
Found at i:83222 original size:19 final size:16
Alignment explanation
Indices: 83183--83223 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
83173 TTGAGATTAA
*
83183 CTCATCGTAAGTCTTT
1 CTCATCATAAGTCTTT
83199 CTCATCATAAGTCTTT
1 CTCATCATAAGTCTTT
*
83215 CGCATCATA
1 CTCATCATA
83224 TAAATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.24, C:0.27, G:0.10, T:0.39
Consensus pattern (16 bp):
CTCATCATAAGTCTTT
Found at i:86913 original size:20 final size:20
Alignment explanation
Indices: 86888--86925 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
86878 GTCTCTTTTG
86888 AAAAAGGATCAATCCCTTGA
1 AAAAAGGATCAATCCCTTGA
*
86908 AAAAAGGGTCAATCCCTT
1 AAAAAGGATCAATCCCTT
86926 TTGGAAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (20 bp):
AAAAAGGATCAATCCCTTGA
Found at i:88203 original size:2 final size:2
Alignment explanation
Indices: 88196--88221 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
88186 GAGTTTGCTG
88196 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
88222 TGAGTGGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:88309 original size:101 final size:102
Alignment explanation
Indices: 88206--88406 Score: 354
Period size: 99 Copynumber: 2.0 Consensus size: 102
88196 ATATATATAT
*
88206 ATATATATATATATATTGAGTGGATTGATTGGTTGGGTTCAACCATTTACATGATA-A-AAGTTT
1 ATATATATATATATATTGAGTGCATTGATTGGTTGGGTTCAACCATTTACATGATATAGAAGTTT
88269 TATTTGCTTGATTCGACAGTTTGGTTGAGTTTACTG-
66 TATTTGCTTGATTCGACAGTTTGGTTGAGTTTACTGA
88305 ATATATATATATATATTGAGTGCATTGATTGGTTGGGTTCAACCATTTACATGATATAGAAGTTT
1 ATATATATATATATATTGAGTGCATTGATTGGTTGGGTTCAACCATTTACATGATATAGAAGTTT
* *
88370 TATTTGTTTGATTCGACTGTTTGGTTGAGTTTACTGA
66 TATTTGCTTGATTCGACAGTTTGGTTGAGTTTACTGA
88407 CGTCACTATG
Statistics
Matches: 96, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
99 55 0.57
100 1 0.01
101 40 0.42
ACGTcount: A:0.27, C:0.08, G:0.21, T:0.44
Consensus pattern (102 bp):
ATATATATATATATATTGAGTGCATTGATTGGTTGGGTTCAACCATTTACATGATATAGAAGTTT
TATTTGCTTGATTCGACAGTTTGGTTGAGTTTACTGA
Found at i:88932 original size:3 final size:3
Alignment explanation
Indices: 88924--88972 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
88914 CTGATTTTTA
* *
88924 TAT TAT TATT TAT TAT ATAT TTT TAT TAT TAT TAA TAT TAT TAT TAT
1 TAT TAT TA-T TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
88971 TA
1 TA
88973 CAAACAGACC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
3 34 0.85
4 6 0.15
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:94495 original size:15 final size:15
Alignment explanation
Indices: 94475--94506 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
94465 GATCAATAGC
94475 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
94490 TTTTGCATACATTCA
1 TTTTGCATACATGCA
94505 TT
1 TT
94507 ATTCATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:97181 original size:14 final size:15
Alignment explanation
Indices: 97155--97183 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
97145 CAACTCAAAC
97155 TTAACTGATTGACTG
1 TTAACTGATTGACTG
97170 TTAACT-ATTGACTG
1 TTAACTGATTGACTG
97184 ATTGCTGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (15 bp):
TTAACTGATTGACTG
Found at i:99878 original size:19 final size:19
Alignment explanation
Indices: 99842--99878 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
99832 GGCCTATAAA
*
99842 ATAAATAAAAATATAAAAT
1 ATAAATAAAAATAAAAAAT
*
99861 ATAAATAATAATAAAAAA
1 ATAAATAAAAATAAAAAA
99879 GTCTCCGGAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (19 bp):
ATAAATAAAAATAAAAAAT
Found at i:100304 original size:134 final size:134
Alignment explanation
Indices: 100063--100769 Score: 1020
Period size: 134 Copynumber: 5.3 Consensus size: 134
100053 TGATTGAAAT
* * *
100063 GAATCGATTTGCTTCACTGCTCTTCAGAAAGACCAAATCTTAAATAAGAAGAATCTGCTCCACTA
1 GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA
* ** *
100128 CTCTTTAGGGGAGATAAGACTCGAGAAAACTTTGATATACTTCACTATTCTTCAGGGAAGATTAA
66 CTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGA
100193 ATCA
131 ATCA
* * ** *
100197 AAATCGATTTGCTTCACTGCTCTTCTGGAAGACCAAATCTGAAAGAAGAAGCGTCCGCTCCACTA
1 GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA
* *
100262 CTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGTTCCACTTCACTATTCTTTAGGGAAGATTGA
66 CTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGA
100327 ATCA
131 ATCA
** *
100331 GAATTAATTTGCTTCACTGCTCTTCAGGAAGACCAAATATGAAAGAAGAAGAATCTGCTCCACTA
1 GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA
* * *
100396 CTCTTTAAGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTGTTCTTCAGGGAATATTGA
66 CTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGA
100461 ATCA
131 ATCA
* * * * *
100465 GAATCGATTTGCTTCACTGCTCTTCAGGAAAACTAAATCTGAAAGAAGAAGAATATACTCCACCA
1 GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA
* *
100530 CTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTTAAGGAAGATTGA
66 CTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGA
*
100595 ATCG
131 ATCA
* * * * * * *
100599 GAATTGATTTACTTCACTGCTATTCAAGAAGACCATATCTGAAAGAAGAA-ACGTCTGCTCCATT
1 GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGA-ATCTGCTCCACT
* * *
100663 ACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTTATCCACTTAACTATTCTTCAAGGAAGATTG
65 ACTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTG
100728 AATCA
130 AATCA
* * * *
100733 AAATCAATTTGCTTCACTGCTCTTTAGAAAGACCAAA
1 GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAA
100770 AATGAAAGTC
Statistics
Matches: 506, Mismatches: 66, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
133 1 0.00
134 505 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (134 bp):
GAATCGATTTGCTTCACTGCTCTTCAGGAAGACCAAATCTGAAAGAAGAAGAATCTGCTCCACTA
CTCTTTAGGGGAGATCAGACTCGAGAAAACTTTGATCCACTTCACTATTCTTCAGGGAAGATTGA
ATCA
Found at i:101565 original size:45 final size:45
Alignment explanation
Indices: 101397--101584 Score: 173
Period size: 45 Copynumber: 4.2 Consensus size: 45
101387 TTCACTTCGT
* * * * *
101397 GAGAAAGTCAAGAATTATAATACTGAAAGATTGACTCCTCTTTAC
1 GAGAAAGTCAAGAATGATAACACTAAAATATTGACTCCTCTTCAC
* * * * *
101442 GAAAAAGCCAAGAAGGACAACACTAAAATATTAACTCCTCTTCAC
1 GAGAAAGTCAAGAATGATAACACTAAAATATTGACTCCTCTTCAC
* * * *
101487 GAGAAAGTTAAGGAA-GAAAACAATAAAATATTGACTCCCCTTCAC
1 GAGAAAGTCAA-GAATGATAACACTAAAATATTGACTCCTCTTCAC
* * * * *
101532 GAGAAAGTCAAGAATGATAATACT-GAATGATTGAATTCTCTTCAT
1 GAGAAAGTCAAGAATGATAACACTAAAAT-ATTGACTCCTCTTCAC
101577 GAGAAAGT
1 GAGAAAGT
101585 TACGAATAAC
Statistics
Matches: 114, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
44 6 0.05
45 105 0.92
46 3 0.03
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (45 bp):
GAGAAAGTCAAGAATGATAACACTAAAATATTGACTCCTCTTCAC
Found at i:101630 original size:38 final size:38
Alignment explanation
Indices: 101567--101777 Score: 210
Period size: 38 Copynumber: 5.6 Consensus size: 38
101557 AATGATTGAA
* * * *
101567 TTCTCTTCATGAGAAAGTTACGAATAACAAAGATCTAC
1 TTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCTAC
* * *
101605 TTCTCTTCACGAGGAAGTCAAGAATAAGAAAGGTCGAC
1 TTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCTAC
* * * * *
101643 TTCTCTTCGCAAGGCATTCAGGAATAACAAAGAT-TGAC
1 TTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCT-AC
* * *
101681 TTCTCTTCACGAAGAAGTCAAGAGTAACAAAAAT-TGAC
1 TTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCT-AC
* * * *
101719 TTCTCTTCACGAGGAAGTCAAGAGTAATAAAAATCAAC
1 TTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCTAC
*
101757 TTCTCTTCACAAGGAAGTCAA
1 TTCTCTTCACGAGGAAGTCAA
101778 TAATGACACT
Statistics
Matches: 144, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
38 144 1.00
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.25
Consensus pattern (38 bp):
TTCTCTTCACGAGGAAGTCAAGAATAACAAAGATCTAC
Found at i:101760 original size:114 final size:114
Alignment explanation
Indices: 101560--101770 Score: 282
Period size: 114 Copynumber: 1.9 Consensus size: 114
101550 AATACTGAAT
* * * *
101560 GATTGAATTCTCTTCATGAGAAAGTTACGAATAACAAAGATCTACTTCTCTTCACGAGGAAGTCA
1 GATTGAATTCTCTTCACGAGAAAGTCAAGAATAACAAAAATCTACTTCTCTTCACGAGGAAGTCA
** * *
101625 AGAATAAGAAAGGTCGACTTCTCTTCGCAAGGCATTCAGGAATAACAAA
66 AGAATAAGAAAAATCAACTTCTCTTCACAAGGCATTCAGGAATAACAAA
* *
101674 GATTGACTTCTCTTCACGA-AGAAGTCAAGAGTAACAAAAAT-TGACTTCTCTTCACGAGGAAGT
1 GATTGAATTCTCTTCACGAGA-AAGTCAAGAATAACAAAAATCT-ACTTCTCTTCACGAGGAAGT
* *
101737 CAAGAGTAATAAAAATCAACTTCTCTTCACAAGG
64 CAAGAATAAGAAAAATCAACTTCTCTTCACAAGG
101771 AAGTCAATAA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
113 2 0.02
114 81 0.98
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.26
Consensus pattern (114 bp):
GATTGAATTCTCTTCACGAGAAAGTCAAGAATAACAAAAATCTACTTCTCTTCACGAGGAAGTCA
AGAATAAGAAAAATCAACTTCTCTTCACAAGGCATTCAGGAATAACAAA
Found at i:102590 original size:25 final size:23
Alignment explanation
Indices: 102555--102621 Score: 64
Period size: 25 Copynumber: 2.8 Consensus size: 23
102545 TTTTTATTTC
102555 CAAAAAA-TTGAAAAATATCAAT
1 CAAAAAATTTGAAAAATATCAAT
* * * *
102577 TAAAAGAATTTTGAAGAATGTTTAAT
1 CAAAA-AA-TTTGAAAAAT-ATCAAT
102603 CAAAAAATTTGAAAAATAT
1 CAAAAAATTTGAAAAATAT
102622 TACCCCTTTC
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
22 4 0.12
23 3 0.09
24 9 0.26
25 10 0.29
26 8 0.24
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (23 bp):
CAAAAAATTTGAAAAATATCAAT
Found at i:103588 original size:27 final size:27
Alignment explanation
Indices: 103531--103588 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
103521 TCGTTTTTCT
*
103531 TTTTCTATTTCTCCATTTTTCTTCTTG
1 TTTTCTATTTCTCCATTTTTCTTCTTC
* * *
103558 TTTTCTATTTTTCCCTTTTTCTTGTTC
1 TTTTCTATTTCTCCATTTTTCTTCTTC
103585 TTTT
1 TTTT
103589 TATCTCTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.05, C:0.21, G:0.03, T:0.71
Consensus pattern (27 bp):
TTTTCTATTTCTCCATTTTTCTTCTTC
Found at i:104378 original size:31 final size:32
Alignment explanation
Indices: 104343--104411 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
104333 TCTTCCCGGG
104343 AAGGTAAAAGTATGGA-TTTGGTA-TCTCAAA-A
1 AAGGTAAAAGTAT-GACTTTGG-AGTCTCAAATA
*
104374 AAGGTAAAGGTATGACTTTGGAGTCTCAAATA
1 AAGGTAAAAGTATGACTTTGGAGTCTCAAATA
104406 AAGGTA
1 AAGGTA
104412 GTTTCAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
30 3 0.09
31 24 0.71
32 7 0.21
ACGTcount: A:0.41, C:0.07, G:0.25, T:0.28
Consensus pattern (32 bp):
AAGGTAAAAGTATGACTTTGGAGTCTCAAATA
Found at i:109686 original size:3 final size:3
Alignment explanation
Indices: 109678--109707 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
109668 TTTTAATATA
109678 AAT AAT AAT AAT AAT AAT AAT AAAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AA
109708 AGGCTTCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:110433 original size:2 final size:2
Alignment explanation
Indices: 110428--110464 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
110418 TATATATATA
110428 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
110465 TTATACACCG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:115652 original size:13 final size:13
Alignment explanation
Indices: 115634--115658 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115624 TGCATTCTTT
115634 TAATATTTTTAAA
1 TAATATTTTTAAA
115647 TAATATTTTTAA
1 TAATATTTTTAA
115659 TTATTCTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATATTTTTAAA
Found at i:116011 original size:17 final size:17
Alignment explanation
Indices: 115989--116022 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
115979 CAATATCCAT
*
115989 GTAGTGAGATGTGAGTG
1 GTAGTGAGATGCGAGTG
116006 GTAGTGAGATGCGAGTG
1 GTAGTGAGATGCGAGTG
116023 ATTAAGATGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.03, G:0.47, T:0.26
Consensus pattern (17 bp):
GTAGTGAGATGCGAGTG
Found at i:116974 original size:15 final size:14
Alignment explanation
Indices: 116945--116976 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
116935 AATGGGCAGT
116945 AATCCCTGCAAAAA
1 AATCCCTGCAAAAA
*
116959 AATCCCTGCGAAAA
1 AATCCCTGCAAAAA
116973 AATC
1 AATC
116977 TCTGTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.28, G:0.09, T:0.16
Consensus pattern (14 bp):
AATCCCTGCAAAAA
Done.