Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007527.1 Hibiscus syriacus cultivar Beakdansim tig00021000_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57897

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3582--3606
11
2.3
11
100
0
50
84
0
0
16
0.63
3748--3803
2
29.5
2
82
10
73
50
3
0
46
1.19
3748--3808
17
3.5
17
80
17
72
50
3
1
44
1.28
4292--4333
20
2.1
20
86
0
57
9
42
35
11
1.74
5548--6115
105
5.4
105
91
1
877
23
18
25
32
1.97
6464--6621
68
2.4
66
84
4
201
35
8
22
33
1.85
6465--6647
65
2.7
67
81
4
183
37
8
21
31
1.84
6597--6875
36
8.0
35
77
11
268
40
14
19
25
1.89
6595--6849
137
1.9
135
86
3
368
40
14
18
27
1.89
6596--6877
101
2.7
105
78
10
315
40
14
19
25
1.90
6738--6909
35
4.9
35
82
6
123
40
16
20
22
1.91
6738--6917
71
2.5
71
82
4
211
38
16
20
25
1.92
7802--7850
22
2.2
22
92
0
80
28
14
24
32
1.94
7814--7857
22
2.0
22
86
0
61
31
13
22
31
1.93
8484--8579
24
4.0
23
75
14
86
1
12
8
78
1.02
8503--8573
8
9.0
8
70
14
58
0
12
7
80
0.90
8497--8579
17
5.1
15
72
22
62
0
13
8
78
0.96
8530--8574
23
1.9
23
86
4
63
0
8
8
82
0.85
11915--11964
2
25.0
2
95
0
91
50
2
0
48
1.12
12046--12098
21
2.5
21
81
0
61
66
0
5
28
1.15
12468--12509
20
2.1
20
86
0
57
9
42
35
11
1.74
21681--21735
27
2.0
27
100
0
110
36
25
7
30
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24674--24713
21
1.9
21
89
0
62
27
37
25
10
1.88
25386--25446
20
2.8
21
75
12
61
44
1
1
52
1.20
33341--33446
50
2.3
45
82
14
119
32
2
12
52
1.53
37816--37863
23
2.2
20
78
10
51
39
2
2
56
1.23
37858--37938
19
4.3
19
72
20
64
48
1
2
48
1.23
39689--39751
28
2.2
28
100
0
126
61
12
3
22
1.45
42490--42564
23
3.3
23
75
1
62
45
2
1
50
1.24
42530--42576
22
2.1
23
88
4
69
53
0
2
44
1.12
42538--42581
22
2.0
22
82
8
54
54
0
2
43
1.12
42824--42857
14
2.4
14
90
5
50
41
14
17
26
1.88
44477--44508
16
2.0
16
100
0
64
18
18
25
37
1.94
44702--44741
20
2.0
20
85
9
55
57
2
0
40
1.12
45714--45781
34
2.0
34
100
0
136
29
11
5
52
1.61
46228--46262
2
17.5
2
100
0
70
48
0
0
51
1.00
48223--48281
28
2.0
30
83
12
77
50
0
1
47
1.11
48237--48280
22
2.0
22
82
8
54
54
0
2
43
1.12
48523--48556
14
2.4
14
90
5
50
41
14
17
26
1.88
53696--53738
21
2.0
21
90
0
68
25
13
30
30
1.94
54160--54252
3
32.0
3
77
18
90
33
1
1
64
1.08
54158--54251
22
4.1
22
84
6
116
31
1
1
65
1.06
54160--54252
14
7.2
13
73
19
79
33
1
1
64
1.08
55712--55753
21
2.0
21
86
4
59
38
7
2
52
1.42

Tables:   1

The End!