Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007528.1 Hibiscus syriacus cultivar Beakdansim tig00021011_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73374

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1172--1196
13
1.9
13
100
0
50
56
16
8
20
1.65
7942--7980
20
1.9
21
84
5
53
43
0
2
53
1.14
7933--7993
31
2.0
29
84
6
77
42
0
6
50
1.28
8478--8531
20
2.7
20
86
13
67
77
0
1
20
0.86
8485--8536
10
5.2
10
82
15
63
76
0
1
21
0.87
9756--9873
7
16.9
7
70
20
54
60
2
0
36
1.16
9814--9945
2
70.0
2
66
24
65
53
3
2
40
1.31
9776--9942
18
9.5
17
72
18
87
56
3
1
38
1.27
9779--9941
7
22.4
7
71
19
88
55
3
1
38
1.28
9772--9945
30
5.8
30
73
18
139
56
3
1
38
1.27
11461--11522
30
2.1
30
93
0
106
27
20
9
41
1.84
15638--15674
15
2.5
15
95
0
65
35
21
27
16
1.94
29061--29112
20
2.7
19
82
5
68
40
5
11
42
1.65
37791--37858
34
2.0
35
85
8
95
26
30
22
20
1.98
40264--40321
18
3.1
18
76
13
62
29
10
10
50
1.70
40281--40321
21
2.0
21
85
0
55
26
9
9
53
1.65
40607--40656
18
3.0
17
77
14
59
24
36
22
18
1.95
47358--47391
12
3.1
11
88
12
52
70
0
0
29
0.87
47346--47392
18
2.8
16
87
12
67
68
0
2
29
1.02
49646--49712
12
6.0
12
67
22
56
47
10
0
41
1.38
49669--49744
21
3.7
21
82
8
93
52
5
2
39
1.38
49641--49744
7
14.6
7
72
20
74
51
6
1
39
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49961--49998
12
3.2
12
92
0
67
7
15
50
26
1.72
49961--50015
24
2.3
24
90
0
83
12
14
47
25
1.80
50207--50231
6
4.2
6
100
0
50
0
64
16
20
1.30
52125--52401
43
6.3
43
74
8
177
26
17
9
46
1.78
53691--53755
26
2.5
26
97
0
121
12
10
40
36
1.78
54007--54095
38
2.3
38
90
3
135
12
10
38
39
1.77
54663--54709
18
2.7
18
86
3
69
29
29
6
34
1.82
55014--55065
20
2.6
20
93
0
86
36
28
9
25
1.87
57182--57226
2
22.0
2
95
4
81
48
2
0
48
1.13
63358--63387
15
1.9
16
93
6
53
80
0
20
0
0.72
67518--67655
54
2.6
54
84
2
179
35
15
21
27
1.93
68017--68076
22
2.7
22
89
0
84
38
18
10
33
1.84
68741--69432
74
9.3
74
85
4
894
26
20
21
32
1.98
68741--69432
148
4.6
150
87
3
990
26
20
21
32
1.98
69615--69687
3
24.7
3
84
8
96
38
0
0
61
0.96

Tables:   1

The End!