genome.fa.s753.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000753.1 Hibiscus syriacus cultivar Beakdansim tig00001456_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138665

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6818--6872	23	2.4	23	78	6	58	58	14	14	12	1.64
8129--8169	21	1.9	22	90	5	66	75	0	4	19	0.98
8816--8979	76	2.2	75	87	3	231	56	10	2	30	1.47
14197--14239	22	2.0	21	81	4	50	58	6	2	32	1.38
29465--29545	22	3.4	23	75	20	67	45	1	0	53	1.08
29461--29526	25	2.7	25	79	11	75	48	1	0	50	1.10
29642--29708	19	3.6	18	70	22	50	47	1	2	47	1.26
29673--29782	27	4.5	23	69	21	55	50	2	0	45	1.22
29739--29798	24	2.5	23	78	5	57	50	3	0	46	1.18
29824--29870	22	2.1	23	88	4	69	53	0	2	44	1.12
29832--29875	22	2.0	22	82	8	54	54	0	2	43	1.12
31098--31215	58	2.0	58	95	0	209	38	11	8	41	1.72
31793--31825	2	16.5	2	100	0	66	48	0	0	51	1.00
43719--43772	14	3.9	15	77	18	55	70	0	3	25	1.04
44027--44069	18	2.5	17	85	7	61	67	2	4	25	1.22
44426--44529	37	2.8	37	86	0	136	29	14	13	42	1.84
45073--45803	105	7.0	105	91	2	1016	22	17	25	34	1.96
46003--46078	36	2.1	36	90	0	116	40	15	21	22	1.90
46076--46157	39	2.1	40	86	2	112	41	12	19	26	1.87
46077--46287	105	2.0	104	95	0	377	38	12	19	29	1.88
46372--46533	72	2.2	75	83	8	199	39	11	19	29	1.87
47674--48210	183	2.9	183	94	0	941	31	21	20	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49761--49790	16	1.9	16	93	6	53	16	23	6	53	1.66
52440--52485	23	2.0	23	83	8	58	73	0	4	21	1.00
52448--52490	16	2.7	15	79	13	50	72	0	4	23	1.04
52657--52725	34	2.1	33	81	8	77	66	0	4	28	1.10
52676--52799	52	2.5	52	81	12	127	62	3	2	31	1.24
52745--52787	18	2.5	17	85	7	61	67	2	4	25	1.22
53136--53240	37	2.8	38	82	4	124	31	13	14	40	1.84
53783--54500	105	6.9	105	91	2	990	22	17	25	34	1.96
54713--54893	36	5.1	36	69	15	126	39	14	19	26	1.90
54688--55005	105	3.1	104	90	2	500	37	12	19	30	1.89
55090--55251	72	2.2	74	84	6	204	40	12	19	27	1.88
56392--56927	183	2.9	183	95	0	950	30	21	20	27	1.98
61382--61421	2	20.5	2	89	5	64	55	0	0	45	0.99
62341--62399	27	2.2	28	79	14	70	50	1	1	45	1.21
62709--62777	32	2.2	32	83	0	84	20	26	28	24	1.99
64313--64349	10	3.8	10	85	7	58	78	0	0	21	0.75
64316--64357	18	2.3	19	91	4	68	80	2	0	16	0.81
64316--64357	19	2.2	19	91	0	66	80	2	0	16	0.81
65031--65167	60	2.3	60	90	0	211	32	15	16	35	1.90
69328--69358	16	1.9	16	93	0	53	41	3	0	54	1.16
69687--69755	2	35.5	2	85	5	97	50	0	0	49	1.00
70728--70759	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73634--73712	16	4.9	16	93	4	133	60	21	11	6	1.52
74791--74833	14	3.1	14	86	0	50	48	23	18	9	1.76
75942--75984	23	2.0	21	86	9	59	34	6	2	55	1.39
86430--86507	40	1.9	41	84	10	106	28	5	14	52	1.62
87686--87755	18	3.7	18	76	14	77	25	30	24	20	1.99
89262--89422	64	2.5	62	84	8	189	27	21	17	34	1.95
94198--94227	16	1.9	16	93	6	53	20	3	20	56	1.56
98447--98485	19	2.0	20	90	5	62	30	5	0	64	1.15
100291--100334	17	2.6	17	96	0	79	4	29	6	59	1.44
104014--104059	21	2.2	21	84	0	56	52	21	6	19	1.69
104755--104858	41	2.5	41	80	7	104	32	21	15	30	1.94
106228--106310	19	4.3	18	79	13	51	31	3	1	63	1.19
107220--107301	34	2.5	32	90	7	137	59	1	3	35	1.23
107571--107738	14	11.9	14	69	22	77	45	7	1	45	1.40
107607--107738	8	17.9	8	74	18	108	46	8	0	43	1.39
107643--107732	35	2.6	35	98	0	171	46	5	1	46	1.33
107607--107738	21	6.0	22	79	11	96	46	8	0	43	1.39
107736--107795	31	1.9	31	89	0	93	53	11	0	35	1.38
112027--112081	25	2.2	25	96	0	101	60	1	16	21	1.45
128822--128863	21	2.0	21	90	0	66	28	14	26	30	1.95
135379--135472	48	1.9	49	80	6	111	23	12	26	37	1.91
135432--135521	32	2.8	31	80	11	101	23	11	27	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136238--136359	16	7.6	16	67	5	66	13	10	28	46	1.77
136300--136361	32	1.9	32	90	6	99	8	8	29	54	1.58
136578--136651	22	3.3	20	70	26	60	47	1	1	50	1.18
136662--136717	23	2.7	19	78	19	67	39	3	7	50	1.47
136694--136747	19	3.1	18	77	15	60	42	0	1	55	1.10

Tables:   1

The End!