genome.fa.s7530.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007530.1 Hibiscus syriacus cultivar Beakdansim tig00021026_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82465

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324--383	2	30.0	2	100	0	120	50	0	0	50	1.00
5195--5269	31	2.4	31	90	0	123	29	13	12	45	1.79
5606--5705	40	2.4	42	80	12	116	45	6	12	37	1.66
14006--14056	26	1.9	27	84	4	68	41	3	3	50	1.39
14084--14135	23	2.2	24	79	3	61	36	7	1	53	1.41
30128--30185	20	2.6	22	86	10	75	32	20	20	25	1.97
32104--32267	65	2.5	64	82	3	213	28	15	25	30	1.96
32218--32264	19	2.6	17	78	21	51	27	17	29	25	1.97
32475--32514	20	2.0	21	85	14	57	45	7	5	42	1.54
38712--38751	21	1.9	21	90	10	64	37	10	0	52	1.35
40678--40841	65	2.5	64	84	1	220	28	15	25	30	1.96
41058--41097	20	2.0	21	85	14	57	45	7	5	42	1.54
41594--41653	23	2.6	23	78	0	66	20	21	26	31	1.98
42979--43020	21	2.0	21	100	0	84	28	19	14	38	1.90
44106--44146	17	2.4	19	80	19	54	58	0	36	4	1.20
50687--50783	34	2.9	34	96	0	176	29	25	19	24	1.98
52472--52515	21	2.1	21	95	0	79	27	4	29	38	1.76
57815--57859	19	2.4	19	88	0	63	26	13	22	37	1.91
58147--58222	32	2.4	32	88	0	116	30	26	25	18	1.98
61952--62002	22	2.3	22	93	0	84	31	25	25	17	1.97
61960--62004	22	2.0	22	100	0	90	26	26	26	20	1.99
62610--62759	67	2.2	67	88	3	212	18	28	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62740--62779	20	2.0	20	85	0	53	17	22	30	30	1.97
62625--62781	67	2.4	65	84	7	183	19	28	24	28	1.98
68811--68861	22	2.3	22	93	0	84	31	25	25	17	1.97
68819--68863	22	2.0	22	100	0	90	26	26	26	20	1.99
69470--69621	68	2.2	68	88	2	216	18	28	26	26	1.98
69601--69643	21	2.0	21	86	0	59	16	25	27	30	1.97
69470--69643	67	2.6	67	85	5	199	18	28	26	27	1.98
72044--72091	25	1.9	25	95	0	87	41	4	14	39	1.65
72457--72496	21	1.9	21	89	0	62	10	25	40	25	1.86

Tables:   1

The End!