genome.fa.s7533.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007533.1 Hibiscus syriacus cultivar Beakdansim tig00021044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114393

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1346--1383	20	1.9	20	88	0	58	42	7	5	44	1.56
1490--1689	65	3.2	64	78	8	162	42	3	8	46	1.51
1933--1961	15	1.9	15	100	0	58	34	0	10	55	1.34
1990--2067	24	3.3	23	71	16	63	39	2	7	50	1.45
2014--2075	11	5.2	11	77	13	52	43	3	8	45	1.49
2122--2165	22	2.0	22	95	0	79	40	6	9	43	1.63
2102--2144	16	2.7	16	92	0	77	41	4	11	41	1.62
2194--2250	17	3.5	17	92	4	91	43	0	3	52	1.18
4776--5060	111	2.6	111	86	0	399	29	16	21	32	1.95
5019--5128	48	2.3	48	83	0	139	35	12	21	30	1.91
4906--5235	160	2.1	159	80	1	365	32	14	23	30	1.94
19105--19219	17	6.8	17	69	20	71	74	0	19	5	1.05
20591--20830	111	2.2	110	85	3	313	27	17	25	30	1.97
20589--20972	166	2.3	164	81	8	413	27	16	26	29	1.97
20591--20972	55	6.9	54	83	5	349	27	17	26	29	1.97
20635--20940	111	2.8	111	80	8	279	26	17	25	30	1.97
25696--25728	14	2.4	14	100	0	66	24	21	27	27	1.99
28055--28101	22	2.1	22	88	0	67	42	25	12	19	1.86
32751--32786	4	9.0	4	100	0	72	50	25	0	25	1.50
32837--32888	4	13.2	4	76	11	54	0	32	0	67	0.91
32837--32890	15	3.8	14	90	9	83	0	33	0	66	0.92
32831--32888	19	3.1	19	78	14	66	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32830--32891	30	2.2	26	86	13	88	0	33	0	66	0.92
39277--39324	21	2.3	21	85	0	60	31	31	16	20	1.95
39287--39327	21	2.0	21	95	0	73	31	26	17	24	1.97
39343--39386	16	2.8	16	100	0	88	29	13	25	31	1.94
39419--39488	21	3.3	21	77	15	90	21	18	20	40	1.92
39400--39492	42	2.2	43	92	1	161	22	19	21	36	1.95
40868--40922	15	3.5	15	72	18	58	43	7	0	49	1.30
40864--40930	32	2.1	32	94	2	118	46	7	0	46	1.31
58874--59166	136	2.1	140	83	7	366	22	15	15	47	1.81
61536--61921	210	1.8	210	82	3	499	32	19	22	24	1.97
63453--63501	13	3.8	12	80	17	53	75	8	12	4	1.16
63456--63521	17	4.5	14	70	22	55	75	7	13	3	1.13
63453--63505	27	2.0	26	88	3	79	75	7	13	3	1.15
63453--63505	26	2.0	27	85	10	74	75	7	13	3	1.15
64523--64584	28	2.2	28	97	0	115	35	16	35	12	1.87
65130--65436	105	2.9	105	89	3	451	31	16	11	40	1.84
65583--65647	28	2.2	29	79	15	80	35	9	16	38	1.81
65583--65649	29	2.3	30	79	7	84	35	8	16	38	1.80
65806--65990	66	2.8	67	79	8	200	30	18	12	38	1.88
65708--65886	96	1.9	96	85	4	254	31	14	12	41	1.83
66066--66203	37	3.7	37	83	11	158	35	15	12	36	1.86
66187--66229	21	2.1	21	86	4	61	20	23	11	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66348--66665	134	2.4	133	83	5	417	26	30	18	25	1.98
67785--68066	139	2.0	139	90	2	442	21	16	15	46	1.84
69430--69459	5	6.0	5	96	0	51	63	0	0	36	0.95
75154--75208	19	2.9	19	97	0	101	25	14	21	38	1.92
76379--76465	40	2.2	40	95	0	156	34	14	12	37	1.85
79033--79076	5	8.8	5	89	0	70	79	4	0	15	0.89
80358--80416	4	13.8	4	81	12	57	71	1	1	25	1.05
80348--80412	13	4.8	13	78	19	55	72	1	1	24	1.02
80358--80416	17	3.4	17	81	6	66	71	1	1	25	1.05
80348--80416	29	2.4	29	81	15	74	72	1	1	24	1.01
80485--80786	35	8.5	35	82	6	358	43	9	3	43	1.54
80767--80837	26	2.6	29	82	8	87	49	8	2	39	1.48
92631--92660	11	2.6	11	94	5	51	73	0	0	26	0.84
92631--92688	14	4.1	14	72	0	62	68	0	1	29	0.99
93868--93910	18	2.4	18	84	0	50	69	2	4	23	1.18
93984--94412	35	12.0	35	83	5	443	43	8	3	44	1.52
96198--96232	3	12.0	3	93	6	63	68	0	0	31	0.90
99965--100058	23	4.5	20	81	10	68	25	25	23	25	2.00
99977--100044	23	3.0	23	93	0	109	29	23	25	22	1.99
105733--105795	22	2.9	22	81	6	76	26	23	19	30	1.98
105911--106000	16	5.9	16	73	20	86	26	25	12	35	1.91
105904--105991	30	2.9	30	98	0	167	26	26	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105927--105977	14	3.5	14	75	19	59	27	27	13	31	1.94
109905--109965	22	2.8	22	87	7	81	27	26	19	26	1.99
110077--110159	30	2.8	30	85	7	114	27	25	12	34	1.91
110110--110168	15	3.9	16	70	18	54	27	25	10	37	1.88
110599--110734	65	2.1	64	83	4	166	27	22	18	31	1.97

Tables:   1

The End!