Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007535.1 Hibiscus syriacus cultivar Beakdansim tig00021081_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62581

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
584--621
2
19.0
2
100
0
76
50
0
0
50
1.00
4187--4232
15
3.1
15
96
0
83
17
34
2
45
1.61
8433--8472
17
2.4
17
86
0
53
15
25
30
30
1.95
12515--12540
8
3.2
8
100
0
52
53
0
11
34
1.37
13287--13328
17
2.5
17
84
0
57
11
23
30
33
1.91
14977--15023
18
2.6
19
83
10
62
63
0
8
27
1.23
15621--15685
23
2.7
24
85
7
96
72
3
16
7
1.21
15621--15685
24
2.7
23
90
4
94
72
3
16
7
1.21
16690--16752
22
2.9
22
76
19
60
7
14
4
73
1.23
22810--22877
32
2.2
31
81
7
75
14
29
30
25
1.95
24975--25015
17
2.4
17
87
0
55
14
21
26
36
1.93
26664--26706
20
2.1
21
87
8
63
46
20
16
16
1.84
29427--29493
22
3.0
22
78
8
80
62
5
4
26
1.38
30388--31356
301
3.2
300
89
2
1417
34
17
15
33
1.91
31476--31512
19
2.0
19
89
5
58
35
5
0
59
1.20
32049--32108
3
20.7
3
80
13
72
36
0
0
63
0.95
33098--33297
110
1.8
110
85
7
282
17
13
18
51
1.77
41758--42058
56
5.5
53
77
11
168
31
10
16
41
1.83
41861--42065
56
3.8
55
87
6
260
30
11
17
41
1.84
41910--42116
56
3.7
56
83
5
177
33
11
16
38
1.85
41886--42120
113
2.1
112
84
7
298
31
11
16
40
1.84
42123--43328
240
5.0
240
88
1
1715
31
16
17
34
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42111--43328
478
2.5
480
88
1
1807
31
16
17
34
1.92
44208--44247
14
2.7
15
88
3
55
25
27
22
25
2.00
44468--44509
21
2.0
21
90
0
66
57
0
0
42
0.99
54810--54928
17
6.4
18
71
13
64
78
3
15
2
1.00
54826--54927
17
6.3
17
68
20
67
79
1
16
1
0.92
54810--54928
37
3.2
36
79
5
123
78
3
15
2
1.00
54990--55014
11
2.3
11
100
0
50
84
0
8
8
0.79
56811--56978
52
3.1
52
78
13
178
27
10
17
44
1.81
57081--57187
42
2.6
42
79
4
128
25
22
20
31
1.98
57269--57470
39
5.4
38
77
7
189
34
18
12
34
1.89
57271--57470
75
2.7
76
85
3
264
34
18
13
35
1.89
57278--57470
36
5.1
38
76
6
160
34
17
12
35
1.88
61056--61154
47
2.1
49
90
3
157
52
5
6
36
1.48

Tables:   1

The End!