Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007537.1 Hibiscus syriacus cultivar Beakdansim tig00021094_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66803
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:11842 original size:2 final size:2
Alignment explanation
Indices: 11835--11864 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
11825 ACCGACTTTA
11835 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11865 GATTAACATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15184 original size:29 final size:31
Alignment explanation
Indices: 15139--15202 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 31
15129 TATAAATCAA
* * * *
15139 TCCTCAAATTTTTGAA-T-ATTTTAATTTTG
1 TCCTCAAATTATGGAATTCATTTTAAATTGG
15168 TCCTCAAATTATGGAATTCATTTTAAATTGG
1 TCCTCAAATTATGGAATTCATTTTAAATTGG
15199 TCCT
1 TCCT
15203 AAACTTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 14 0.48
30 1 0.03
31 14 0.48
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.48
Consensus pattern (31 bp):
TCCTCAAATTATGGAATTCATTTTAAATTGG
Found at i:15977 original size:70 final size:70
Alignment explanation
Indices: 15895--16083 Score: 333
Period size: 70 Copynumber: 2.7 Consensus size: 70
15885 AAAAGCATAC
*
15895 AAAAATTTAACCCATCCATGTTGGATACATGCCTATGTCCGAGACTCGCGTCTTGAATAGAAGAA
1 AAAAATTTAACCCATCCATGTCGGATACATGCCTATGTCCGAGACTCGCGTCTTGAATAGAAGAA
15960 CATTG
66 CATTG
15965 AAAAATTTAACCCATCCATGTCGGATACATGCCTATGTCCGAGACTCGCGTCTTGAATAGAAGAA
1 AAAAATTTAACCCATCCATGTCGGATACATGCCTATGTCCGAGACTCGCGTCTTGAATAGAAGAA
16030 CATTG
66 CATTG
* * * *
16035 AAAAATTTAACCCATCCATGTCGAAAACATACCTATGTCCGAGGCTCGC
1 AAAAATTTAACCCATCCATGTCGGATACATGCCTATGTCCGAGACTCGC
16084 ATCTCAGATG
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 114 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (70 bp):
AAAAATTTAACCCATCCATGTCGGATACATGCCTATGTCCGAGACTCGCGTCTTGAATAGAAGAA
CATTG
Found at i:18944 original size:32 final size:35
Alignment explanation
Indices: 18908--18985 Score: 108
Period size: 38 Copynumber: 2.2 Consensus size: 35
18898 TTTAATGTAT
18908 AAACACAAAC-GAGAGAGAG-T-GGGTATCTAAAA
1 AAACACAAACAGAGAGAGAGATGGGGTATCTAAAA
18940 AAACACAAAAACAAGAGAGAGAGATGGGGTATCTAAAA
1 AAACAC--AAAC-AGAGAGAGAGATGGGGTATCTAAAA
18978 AAACACAA
1 AAACACAA
18986 GTCCATATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
32 6 0.15
34 4 0.10
36 11 0.28
37 1 0.03
38 18 0.45
ACGTcount: A:0.55, C:0.13, G:0.22, T:0.10
Consensus pattern (35 bp):
AAACACAAACAGAGAGAGAGATGGGGTATCTAAAA
Found at i:26518 original size:25 final size:25
Alignment explanation
Indices: 26484--26536 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
26474 AAAAGAAGTA
26484 ATGGACCAAAATATTATCTTATCTT
1 ATGGACCAAAATATTATCTTATCTT
26509 ATGGACCAAAATATTATCTTATCTT
1 ATGGACCAAAATATTATCTTATCTT
26534 ATG
1 ATG
26537 CCCAAGTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (25 bp):
ATGGACCAAAATATTATCTTATCTT
Found at i:28580 original size:112 final size:112
Alignment explanation
Indices: 28445--28667 Score: 338
Period size: 112 Copynumber: 2.0 Consensus size: 112
28435 ACACATATAT
* * * * **
28445 AGAGAGAGAGGATATGATACTGTTTTACAATGTAAAATTATTTTAGTTTTATACATATTTAGAAC
1 AGAGAGAGAGGATATGATACTGTTATACAATATAAAACTATTTTAGTTTTACACATAAATAGAAC
* *
28510 CATTTGATGATAAAAAATATTCACTCGAAAAAAAACAAAGAGTTAAG
66 CATTTGACGATAAAAAATATTCACTCAAAAAAAAACAAAGAGTTAAG
* *
28557 AGAGAGAGAGGATATGATCCTGTTATACAATATAAAACTCTTTTAGTTTTACACATAAATAGAAC
1 AGAGAGAGAGGATATGATACTGTTATACAATATAAAACTATTTTAGTTTTACACATAAATAGAAC
* *
28622 CGTTTGACGATAAAAAATATTCACTCAAAAAAAAATAAAGAGTTAA
66 CATTTGACGATAAAAAATATTCACTCAAAAAAAAACAAAGAGTTAA
28668 TCTCAACCAT
Statistics
Matches: 99, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
112 99 1.00
ACGTcount: A:0.46, C:0.10, G:0.14, T:0.30
Consensus pattern (112 bp):
AGAGAGAGAGGATATGATACTGTTATACAATATAAAACTATTTTAGTTTTACACATAAATAGAAC
CATTTGACGATAAAAAATATTCACTCAAAAAAAAACAAAGAGTTAAG
Found at i:29266 original size:15 final size:15
Alignment explanation
Indices: 29246--29284 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
29236 AGAGTTTTGT
29246 CCCTTGCTTAGAGAG
1 CCCTTGCTTAGAGAG
29261 CCCTTGCTTAGAGAG
1 CCCTTGCTTAGAGAG
29276 CCCTTGCTT
1 CCCTTGCTT
29285 GAGTTCTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (15 bp):
CCCTTGCTTAGAGAG
Found at i:32003 original size:22 final size:24
Alignment explanation
Indices: 31978--32028 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
31968 TTCTATATTA
*
31978 TTTTTTTCAAT-TAAAT-ATATAT
1 TTTTTTTCAATAAAAATAATATAT
* *
32000 TTTTATTGAATAAAAATAATATAT
1 TTTTTTTCAATAAAAATAATATAT
32024 TTTTT
1 TTTTT
32029 AGAAACATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 9 0.39
23 4 0.17
24 10 0.43
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTTTTTCAATAAAAATAATATAT
Found at i:32808 original size:2 final size:2
Alignment explanation
Indices: 32797--32855 Score: 111
Period size: 2 Copynumber: 30.0 Consensus size: 2
32787 TAATAGGGAG
32797 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
32838 TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA
32856 AAGGTTAAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.02
2 55 0.98
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:37138 original size:60 final size:59
Alignment explanation
Indices: 37063--37234 Score: 154
Period size: 60 Copynumber: 2.9 Consensus size: 59
37053 TATTTGGATG
*
37063 AGTTTGGGATGAAATTGGAA-GATCAAAAAGTTTAGGGA-TCAATTTAGAATGAGATTCAT
1 AGTTTGGGATGAAATTGGAATGATC-AAAAGTTTAAGGACT-AATTTAGAATGAGATTCAT
* **
37122 AGTTTGAGTATGAAATTGGAATTTTCAAAAGTTTAAGGACTAATTTAGAATGAGAGTT--T
1 AGTTTG-GGATGAAATTGGAATGATCAAAAGTTTAAGGACTAATTTAGAATGAGA-TTCAT
** ** * * * *
37181 GAGGATGAAATTGAAATTGAAATGTTTAAAAGTTTAAGGACTAATTTAAAATGA
1 -AGTTTGGGA-TGAAATTGGAATGATCAAAAGTTTAAGGACTAATTTAGAATGA
37235 AAGTTATAAT
Statistics
Matches: 95, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
59 8 0.08
60 82 0.86
61 5 0.05
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (59 bp):
AGTTTGGGATGAAATTGGAATGATCAAAAGTTTAAGGACTAATTTAGAATGAGATTCAT
Found at i:38458 original size:21 final size:21
Alignment explanation
Indices: 38432--38589 Score: 171
Period size: 21 Copynumber: 7.6 Consensus size: 21
38422 GTTTCCAGAT
*
38432 TCGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
*
38453 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
* *
38474 TCGCAATGCTAA-TAT-GTA-AA
1 TCGCAATGCGAACT-TCG-ACTA
*
38494 TCGCAATGCGATA-GTCGACTA
1 TCGCAATGCGA-ACTTCGACTA
*
38515 TCGCAATGCGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
* *
38536 ACGCAACGCGAACTTCGACTA
1 TCGCAATGCGAACTTCGACTA
* *
38557 TCGCAATGTGAACTTGGACTA
1 TCGCAATGCGAACTTCGACTA
38578 TCGCAATGCGAA
1 TCGCAATGCGAA
38590 TATGTAAATC
Statistics
Matches: 114, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
20 16 0.14
21 98 0.86
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (21 bp):
TCGCAATGCGAACTTCGACTA
Found at i:38601 original size:83 final size:82
Alignment explanation
Indices: 38432--38608 Score: 200
Period size: 83 Copynumber: 2.1 Consensus size: 82
38422 GTTTCCAGAT
* * * * *
38432 TCGCAACGCGAACTTCGACTATCGCAATGCGAACTTGGACTATCGCAATGCTAATATGTAAATCG
1 TCGCAATGCGAACTTCGACTAACGCAACGCGAACTTCGACTATCGCAATGCTAATATGGAAATCG
*
38497 CAATGCGATAGTCGACTA
66 CAATGCGATAGTC-ACAA
* *
38515 TCGCAATGCGAACTTGGACTAACGCAACGCGAACTTCGACTATCGCAATG-TGAACT-TGGACTA
1 TCGCAATGCGAACTTCGACTAACGCAACGCGAACTTCGACTATCGCAATGCT-AA-TATGGA-AA
38578 TCGCAATGCGAATATGT-A-AA
63 TCGCAATGCG-ATA-GTCACAA
38598 TCGCAATGCGA
1 TCGCAATGCGA
38609 TAGTCCAAGT
Statistics
Matches: 81, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
82 1 0.01
83 62 0.77
84 13 0.16
85 3 0.04
86 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.23
Consensus pattern (82 bp):
TCGCAATGCGAACTTCGACTAACGCAACGCGAACTTCGACTATCGCAATGCTAATATGGAAATCG
CAATGCGATAGTCACAA
Found at i:38632 original size:21 final size:21
Alignment explanation
Indices: 38598--38762 Score: 147
Period size: 21 Copynumber: 7.9 Consensus size: 21
38588 AATATGTAAA
*
38598 TCGCAATGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* * *
38619 TCGCATTGCAATAGT-CGACT
1 TCGCATTGCGATAGTCCAAGT
* * *
38639 ATCGCATTGCAAT-TTACATA-T
1 -TCGCATTGCGATAGTCCA-AGT
38660 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
*
38681 TCGCATTGCGATAGTCAAAGT
1 TCGCATTGCGATAGTCCAAGT
* **
38702 TAGTGTTGCGATAGTCCAAGT
1 TCGCATTGCGATAGTCCAAGT
* *
38723 TCGCATTGCGATAGTCGAATT
1 TCGCATTGCGATAGTCCAAGT
* * *
38744 TAGCGTTGTGATAGTCCAA
1 TCGCATTGCGATAGTCCAA
38763 TTAAAAAAAA
Statistics
Matches: 116, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
20 16 0.14
21 99 0.85
22 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (21 bp):
TCGCATTGCGATAGTCCAAGT
Found at i:38641 original size:62 final size:62
Alignment explanation
Indices: 38573--38696 Score: 173
Period size: 62 Copynumber: 2.0 Consensus size: 62
38563 TGTGAACTTG
38573 GACTATCGCAATGCGAATATGTA-A-A-TCGCAATGCGATAGTCCAAGTTCGCATTGCAATAGTC
1 GACTATCGCAATGC-AAT-T-TACATATTCGCAATGCGATAGTCCAAGTTCGCATTGCAATAGTC
* * *
38635 GACTATCGCATTGCAATTTACATATTCGCATTGCGATAGTCCAAGTTCGCATTGCGATAGTC
1 GACTATCGCAATGCAATTTACATATTCGCAATGCGATAGTCCAAGTTCGCATTGCAATAGTC
38697 AAAGTTAGTG
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
59 2 0.04
60 2 0.04
61 4 0.07
62 48 0.86
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (62 bp):
GACTATCGCAATGCAATTTACATATTCGCAATGCGATAGTCCAAGTTCGCATTGCAATAGTC
Found at i:42346 original size:60 final size:60
Alignment explanation
Indices: 42234--42346 Score: 165
Period size: 60 Copynumber: 1.9 Consensus size: 60
42224 ATAGTTAGAT
* *
42234 GATCATTTTATAACTTTTAATAGTCGAACAAGTCAAAAAAGCAACGTTCTATAATTAAAG
1 GATCATTTTATAACTTTTAATAGTCGAACAAGTCAAAAAAGCAACATCCTATAATTAAAG
* * *
42294 GATCATTTTATAACTTTTAATAGTCGAGA-TATTCAATAAAGCAACATCCTATA
1 GATCATTTTATAACTTTTAATAGTCGA-ACAAGTCAAAAAAGCAACATCCTATA
42347 GTCGATGACC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
60 46 0.98
61 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.11, T:0.34
Consensus pattern (60 bp):
GATCATTTTATAACTTTTAATAGTCGAACAAGTCAAAAAAGCAACATCCTATAATTAAAG
Found at i:44343 original size:21 final size:21
Alignment explanation
Indices: 44319--44363 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
44309 CCCTAACTTA
*
44319 AAACCCTAAATTATAAACTCT
1 AAACCCTAAATCATAAACTCT
* *
44340 AAACCCTATATCATAATCTCT
1 AAACCCTAAATCATAAACTCT
44361 AAA
1 AAA
44364 AATAAACCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (21 bp):
AAACCCTAAATCATAAACTCT
Found at i:49171 original size:23 final size:23
Alignment explanation
Indices: 49139--49217 Score: 72
Period size: 23 Copynumber: 3.4 Consensus size: 23
49129 AAACTTTACA
*
49139 TGGTCTTTCGGGACATTTCTACG
1 TGGTCCTTCGGGACATTTCTACG
* *
49162 TGGTCCTTCGGGATATTTCAACG
1 TGGTCCTTCGGGACATTTCTACG
49185 TGG-CACTTCGGTG-CATATTCTACG
1 TGGTC-CTTCGG-GACAT-TTCTACG
* *
49209 CGGTACTTC
1 TGGTCCTTC
49218 AGTGCAATTC
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.02
23 31 0.69
24 13 0.29
ACGTcount: A:0.15, C:0.24, G:0.25, T:0.35
Consensus pattern (23 bp):
TGGTCCTTCGGGACATTTCTACG
Found at i:50899 original size:19 final size:16
Alignment explanation
Indices: 50860--50895 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
50850 CGAAATACAA
50860 AATAT-AATAATCCAT
1 AATATAAATAATCCAT
50875 AATATAAATAATCCAT
1 AATATAAATAATCCAT
*
50891 TATAT
1 AATAT
50896 TATATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (16 bp):
AATATAAATAATCCAT
Found at i:50903 original size:2 final size:2
Alignment explanation
Indices: 50891--50919 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
50881 AATAATCCAT
50891 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50920 AACTAACCGA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:51028 original size:18 final size:19
Alignment explanation
Indices: 50991--51027 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
50981 TTTTAAAAAA
50991 AAATTACCTGATTTTTTTT
1 AAATTACCTGATTTTTTTT
51010 AAATTACCTGATTTTTTT
1 AAATTACCTGATTTTTTT
51028 AGGTCCGGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.05, T:0.57
Consensus pattern (19 bp):
AAATTACCTGATTTTTTTT
Found at i:51182 original size:7 final size:7
Alignment explanation
Indices: 51145--51169 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
51135 AAAATACATA
51145 TTTTTTG
1 TTTTTTG
51152 TTTTTTG
1 TTTTTTG
51159 TTTTTTG
1 TTTTTTG
51166 TTTT
1 TTTT
51170 ATTTTATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:51742 original size:181 final size:180
Alignment explanation
Indices: 51443--51921 Score: 717
Period size: 181 Copynumber: 2.6 Consensus size: 180
51433 TCGATCCAAA
* * * * *
51443 TTAAAAATGTATCGATCCATATCAATATAATAGGTAAAAATATGACAAAACCGGTCA-CGAAAAG
1 TTAAAAATGTATCGATCCATAACGATATAACAAGTAAAAATATGACAAAA-CGGT-ATCGAAATG
* *
51507 ATAATACCGGTAAAGCGCTACCGGATATATTAAAAGTGTCGATACTTTAATATAAGTATCGACAC
64 ATAAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACAC
*
51572 TTTGTGAATTTAAAAGAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTT
129 TTTGTGAATTTAAAAAAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTT
* *
51624 TATAAAAATGTATCAATCCATAACGATATAACAAATAAAAATATGACAAAACGGTATCGAAATGA
1 T-TAAAAATGTATCGATCCATAACGATATAACAAGTAAAAATATGACAAAACGGTATCGAAATGA
* *
51689 TAAAACTGATAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACT
65 TAAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACT
* * *
51754 TTGTGAATTTAAAAAATAAGTATTTTTAGCGCCTATAAAGTGTCGATACTT
130 TTGTGAATTTAAAAAAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTT
* * * * *
51805 TTAAAAAATATATCGATCCACAACGATATAACATGTAGAAATATGACAAAACTGGCATCGAAATG
1 TT-AAAAATGTATCGATCCATAACGATATAACAAGTAAAAATATGACAAAAC-GGTATCGAAATG
*
51870 ATAAAACCGGTAAAGCGCTACCGTATATATTGAAAGTGTCGATACTTTAATA
64 ATAAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATA
51922 AGTACGTGTA
Statistics
Matches: 269, Mismatches: 25, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
180 2 0.01
181 164 0.61
182 103 0.38
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (180 bp):
TTAAAAATGTATCGATCCATAACGATATAACAAGTAAAAATATGACAAAACGGTATCGAAATGAT
AAAACCGGTAAAGCGCTACCGGATATATTGAAAGTGTCGATACTTTAATATAAGTATCGACACTT
TGTGAATTTAAAAAAGAAGCAGTTTTAGCGCCTATAAAGTGTCGATACTT
Found at i:54144 original size:21 final size:21
Alignment explanation
Indices: 54119--54159 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
54109 ACAATCAAGA
54119 GTCGAAGAGAAACTTGAGAGT
1 GTCGAAGAGAAACTTGAGAGT
*
54140 GTCGAAGAGACACTTGAGAG
1 GTCGAAGAGAAACTTGAGAG
54160 ACATAAGGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.12, G:0.34, T:0.17
Consensus pattern (21 bp):
GTCGAAGAGAAACTTGAGAGT
Found at i:54208 original size:16 final size:15
Alignment explanation
Indices: 54172--54208 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
54162 ATAAGGGGGA
54172 AGTGGAAGGAAAAAT
1 AGTGGAAGGAAAAAT
*
54187 AGTGGACGGAAAAAT
1 AGTGGAAGGAAAAAT
54202 AGATGGA
1 AG-TGGA
54209 GTGGTGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.49, C:0.03, G:0.35, T:0.14
Consensus pattern (15 bp):
AGTGGAAGGAAAAAT
Found at i:54272 original size:33 final size:33
Alignment explanation
Indices: 54208--54272 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
54198 AAATAGATGG
* *
54208 AGTGGTGAAAGAAGTAGAGGTGTTGAGGGGTGA
1 AGTGGTGAAAGAAGTAGAGGTGTTAAAGGGTGA
*
54241 AGTGGTGAAAGAAGTTGAGGTGTTAAAGGGTG
1 AGTGGTGAAAGAAGTAGAGGTGTTAAAGGGTG
54273 GTCTTAAGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.46, T:0.23
Consensus pattern (33 bp):
AGTGGTGAAAGAAGTAGAGGTGTTAAAGGGTGA
Found at i:56082 original size:19 final size:19
Alignment explanation
Indices: 56058--56102 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
56048 TAGGGTTAAC
56058 TTTGTATAAGATTTATAAT
1 TTTGTATAAGATTTATAAT
*
56077 TTTGTATACGATTTATAAT
1 TTTGTATAAGATTTATAAT
56096 TTTGTAT
1 TTTGTAT
56103 GTGAATGTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.31, C:0.02, G:0.11, T:0.56
Consensus pattern (19 bp):
TTTGTATAAGATTTATAAT
Found at i:56799 original size:201 final size:200
Alignment explanation
Indices: 56454--57307 Score: 1058
Period size: 200 Copynumber: 4.4 Consensus size: 200
56444 TAAGCATATA
* *** *
56454 TGTCGATCCATATATAAAAAGTATCGATCCCTGAAACATCAAAACCCATAAGTATAATGTAATAG
1 TGTCGATCCATTTATAAAAAGTATCGATCCAAAAAACATCGAAACCCATAAGTATAATGTAATAG
*
56519 GTAATTTTTCAATCTAACCGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTA
66 GTAATTTTTCAATGTAA-CGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTA
** * * * *
56584 TTAACACTTTTTAATTTTGTGTCGATACTTTTTGTCCATAATGAATGCACAAAAAGGGTACAATC
130 TCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCACAAAAAGGGTGCAACC
56649 ATAAAG
195 ATAAAG
*
56655 TGTCGATCCATTTATAAAATGTATCGATCCAAAAAACATCGAAACCCATAAGTATAATGTAATAG
1 TGTCGATCCATTTATAAAAAGTATCGATCCAAAAAACATCGAAACCCATAAGTATAATGTAATAG
* *
56720 GTAATTTTTCAATGTAACTGGTATAAATATACCGGTTTTATGAGAGAGTAGGTTTACAACATGTA
66 GTAATTTTTCAATGTAAC-GGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTA
* * *
56785 TCGATACTTTTTAATTTTGTGTTGATACTTTTGGTCCAGAATGAATGC-CAAAAAGGGTGCACCC
130 TCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCACAAAAAGGGTGCAACC
56849 ATAAAG
195 ATAAAG
* * * *
56855 TGTCGATCAATTTATAAAAAGTATAGATCCCAGAAACATCGAAACCCATAAGTATAATGTAATAG
1 TGTCGATCCATTTATAAAAAGTATCGATCCAAAAAACATCGAAACCCATAAGTATAATGTAATAG
* * * *
56920 GTAATTTTTTAATGTAAACGGTATAAATATACCAGTTTTATGAGATAATATGTCTACAACATGTA
66 GTAATTTTTCAATGT-AACGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTA
*
56985 TCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCATAATGAATGCA-AAAAAGGGTGC-ACA
130 TCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCACAAAAAGGGTGCAAC-
57048 CATAAAG
194 CATAAAG
*
57055 TGTTGATCC----A-AAAAA-TATCG-----------A---A-ACCCATAAGTATAATGTAATAG
1 TGTCGATCCATTTATAAAAAGTATCGATCCAAAAAACATCGAAACCCATAAGTATAATGTAATAG
* * * * * *
57099 GTAATTTTGT-AATATAATCGATATAACTATACCGATTTTATGAGAAAATAGGTATACAACATGT
66 GTAATTTT-TCAATGTAA-CGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGT
* * *
57163 ATCGACACTTTTTAATTTTGTGTCGATACTTTTTGTCCAGAATGATTGCACAAAAAGGGTGCACC
129 ATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCACAAAAAGGGTGCAAC
57228 CATAAAG
194 CATAAAG
* * * * * * *
57235 TGTCGATCCATTTTTAAAATGTGTTC-ATCAAAAAAATATCGAAATCCATAATTATAATGTAATA
1 TGTCGATCCATTTATAAAAAGT-ATCGATCCAAAAAACATCGAAACCCATAAGTATAATGTAATA
*
57299 GATAATTTT
65 GGTAATTTT
57308 GTAACATAAC
Statistics
Matches: 568, Mismatches: 55, Indels: 60
0.83 0.08 0.09
Matches are distributed among these distances:
178 2 0.00
179 120 0.21
180 28 0.05
181 1 0.00
183 1 0.00
185 4 0.01
186 1 0.00
187 2 0.00
194 4 0.01
195 5 0.01
196 1 0.00
197 1 0.00
199 1 0.00
200 206 0.36
201 191 0.34
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33
Consensus pattern (200 bp):
TGTCGATCCATTTATAAAAAGTATCGATCCAAAAAACATCGAAACCCATAAGTATAATGTAATAG
GTAATTTTTCAATGTAACGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACATGTAT
CGACACTTTTTAATTTTGTGTCGATACTTTTGGTCCAGAATGAATGCACAAAAAGGGTGCAACCA
TAAAG
Found at i:57192 original size:179 final size:180
Alignment explanation
Indices: 56892--57244 Score: 566
Period size: 179 Copynumber: 2.0 Consensus size: 180
56882 TCCCAGAAAC
* * *
56892 ATCGAAACCCATAAGTATAATGTAATAGGTAATTTTTTAATGTAAACGGTATAAATATACCAGTT
1 ATCGAAACCCATAAGTATAATGTAATAGGTAATTTTGTAATATAAACGATATAAATATACCAGTT
* * *
56957 TTATGAGATAATATGTCTACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCC
66 TTATGAGAAAATAGGTATACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCC
* *
57022 ATAATGAATGCA-AAAAAGGGTGCACACATAAAGTGTTGATCCAAAAAAT
131 AGAATGAATGCACAAAAAGGGTGCACACATAAAGTGTCGATCCAAAAAAT
* *
57071 ATCGAAACCCATAAGTATAATGTAATAGGTAATTTTGTAATATAATCGATATAACTATACC-GAT
1 ATCGAAACCCATAAGTATAATGTAATAGGTAATTTTGTAATATAAACGATATAAATATACCAG-T
*
57135 TTTATGAGAAAATAGGTATACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTTGTC
65 TTTATGAGAAAATAGGTATACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTC
* *
57200 CAGAATGATTGCACAAAAAGGGTGCACCCATAAAGTGTCGATCCA
130 CAGAATGAATGCACAAAAAGGGTGCACACATAAAGTGTCGATCCA
57245 TTTTTAAAAT
Statistics
Matches: 159, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
178 1 0.01
179 129 0.81
180 29 0.18
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (180 bp):
ATCGAAACCCATAAGTATAATGTAATAGGTAATTTTGTAATATAAACGATATAAATATACCAGTT
TTATGAGAAAATAGGTATACAACATGTATCGACACTTTTTAATTTTGTGTCGATACTTTTGGTCC
AGAATGAATGCACAAAAAGGGTGCACACATAAAGTGTCGATCCAAAAAAT
Found at i:58050 original size:2 final size:2
Alignment explanation
Indices: 58043--58072 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
58033 ATGGGGAATG
58043 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58073 CTTCGGAAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:60646 original size:199 final size:199
Alignment explanation
Indices: 60196--61330 Score: 1438
Period size: 200 Copynumber: 5.8 Consensus size: 199
60186 AGTTTCTCAT
* * * ** * * * *
60196 AAAGTGTCGATCCATATATAAAAAGTAACGACCCCAAAAACATCAAAACCGATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTGTCGATCCC-GAAACATCGAAACCCATAATTATAATGTA
* * ** * *
60261 ATAGGTAATTTT-TCAATGTAACCGGTATAAATATAATGGTTTTATGA-AAAATAGGTCTATAAC
65 ATAGGTAATTTTGT-AATATAACTGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAAC
* * *
60324 ATATATCAACACTTTTTAATTTTGTGTCGATACTTTTTGTCCAGAATGGATGCCAAAAAAGGATG
129 ATGTATCGACACTTTTTAATATTGTGTCGATACTTTTTGTCCAGAATGGATGCC-AAAAAGGATG
60389 AACGCAC
193 AACGCAC
60396 AAAAGTGTCGATACATTTATTAAAAGTGTCGATCCCGAAACATCGAAACCCATAATTATAATGTA
1 -AAAGTGTCGATACATTTATTAAAAGTGTCGATCCCGAAACATCGAAACCCATAATTATAATGTA
* *
60461 ATAGGTAATTTTGTAATATAACTGGTATACATATACCGGTTTTATGAGAGAATAGGTATACAACA
65 ATAGGTAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACA
* * * * *
60526 TGTAGCGACATTTTTTTATTTTGTGTCGATACTTTTTGTCCAGAATGGATACCAAAAAGGATGAA
130 TGTATCGACACTTTTTAATATTGTGTCGATACTTTTTGTCCAGAATGGATGCCAAAAAGGATGAA
*
60591 CGCTC
195 CGCAC
*
60596 AAAGTGTCGATACATTTATTAAAAGTGTCGATCCCGAAACATCGAAACCCATAATTATAATATAA
1 AAAGTGTCGATACATTTATTAAAAGTGTCGATCCCGAAACATCGAAACCCATAATTATAATGTAA
* *
60661 TAGGTAATTTTGTAATATAACTGGTATAAATATATCGGTTTTATGAGAGAATA-GTCTACAATAT
66 TAGGTAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACAT
* *
60725 GTATCGACACTTTTTAATATTGTGTCGATACTTTTTGTCCAAAATAGATGCCAAAAAAGG-TGAA
131 GTATCGACACTTTTTAATATTGTGTCGATACTTTTTGTCCAGAATGGATGCC-AAAAAGGATGAA
*
60789 CGGAC
195 CGCAC
*
60794 AAAGTGTCGATAC---CA--AAAA---T--AT--CG-AA-AT------CCATAATTATAATGTAA
1 AAAGTGTCGATACATTTATTAAAAGTGTCGATCCCGAAACATCGAAACCCATAATTATAATGTAA
* * *
60839 TAGATAATTTTGTAATATAACCGGTATAAATATACCGATTTTATGAGAGAATAGGTCTACAACAT
66 TAGGTAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACAT
* * * *
60904 GTATCGACACTTTTTAATATTGTGTCGATACTTTATATCCAGAATGGATGCCAAAAAGGGTAAAC
131 GTATCGACACTTTTTAATATTGTGTCGATACTTTTTGTCCAGAATGGATGCCAAAAAGGATGAAC
60969 GCAC
196 GCAC
* * *
60973 AAAGTGTCGATACATTTATTAAATGTGTCGATTCTGAAAACATCGAAACCCATAATTATAATGTA
1 AAAGTGTCGATACATTTATTAAAAGTGTCGATCCCG-AAACATCGAAACCCATAATTATAATGTA
* *
61038 TTAGGTAATTTTGTAATATAA-TCGGTATAAATATACCGGTTTAATGAGAGAATAGGTCTACAAC
65 ATAGGTAATTTTGTAATATAACT-GGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAAC
* * *
61102 ATGTATCGACACTTTTTAATATTGTATCGATACTTTATGTCCAGAATGGATGCCAAAAAGGGTGA
129 ATGTATCGACACTTTTTAATATTGTGTCGATACTTTTTGTCCAGAATGGATGCCAAAAAGGATGA
61167 ACGCAC
194 ACGCAC
* * * *
61173 AAAGTGTCGATATATTT-TCAAAAAAGTGTCAATCCCAAAACATCG-AACCCATAATTATAATGT
1 AAAGTGTCGATACATTTAT--TAAAAGTGTCGATCCCGAAACATCGAAACCCATAATTATAATGT
61236 AATAGGTAA-TTT-T--T-TAA--GGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAAC
64 AATAGGTAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAAC
* * * * *
61294 ATGTAGCGCCATTTTTTTATTTTGTGTCGATACTTTT
129 ATGTATCGACACTTTTTAATATTGTGTCGATACTTTT
61331 AAATAACACA
Statistics
Matches: 827, Mismatches: 78, Indels: 67
0.85 0.08 0.07
Matches are distributed among these distances:
178 72 0.09
179 78 0.09
182 1 0.00
184 5 0.01
185 2 0.00
186 2 0.00
187 1 0.00
188 2 0.00
189 2 0.00
190 1 0.00
191 1 0.00
192 70 0.08
193 6 0.01
194 5 0.01
195 2 0.00
197 1 0.00
198 77 0.09
199 149 0.18
200 248 0.30
201 102 0.12
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.33
Consensus pattern (199 bp):
AAAGTGTCGATACATTTATTAAAAGTGTCGATCCCGAAACATCGAAACCCATAATTATAATGTAA
TAGGTAATTTTGTAATATAACTGGTATAAATATACCGGTTTTATGAGAGAATAGGTCTACAACAT
GTATCGACACTTTTTAATATTGTGTCGATACTTTTTGTCCAGAATGGATGCCAAAAAGGATGAAC
GCAC
Found at i:60743 original size:20 final size:21
Alignment explanation
Indices: 60720--60760 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
60710 AATAGTCTAC
60720 AATA-TGTATCGACACTTTTT
1 AATATTGTATCGACACTTTTT
* *
60740 AATATTGTGTCGATACTTTTT
1 AATATTGTATCGACACTTTTT
60761 GTCCAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.27, C:0.12, G:0.12, T:0.49
Consensus pattern (21 bp):
AATATTGTATCGACACTTTTT
Found at i:62372 original size:199 final size:198
Alignment explanation
Indices: 62026--62727 Score: 691
Period size: 199 Copynumber: 3.5 Consensus size: 198
62016 ACCTAAATAT
* *
62026 GTGTC-ATACATTT-TCTATAAGTATCGA-CCCAAAAAACATCAAAACCAATAATTATAATGTAA
1 GTGTCGATACATTTAT-TAAAAGTATCGATCCC-AAAAACATCGAAACCAATAATTATAATGTAA
* * * * *
62088 TAGGTAAATTAACAATGTAACCGGTATAAATATACCGGTTAATTAGAAACAT-GTC-GACATAAT
64 TAGGTAAATTTACAATGTAACCGATATAAATATACCGGTTTATGAGAAA-ATAGTCAG-CATAAA
** *
62151 GTATCGACACTTATGGAATTTGTGTCGATACTTATTGTCCAGAATGAATGCCCAAACGAGGTGTA
127 GTATCGACACTTATTAAATTTGTGTCGATACTT-TTGTCCAGAATGAATGCCCAAACGAGGTGCA
62216 CGCATAAA
191 CGCATAAA
*
62224 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCGATAATTATAATGTAATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * *
62289 GGTAATTTTACAATGTAACCGATAT-AA-ATACCGATTTTATGAGAAAATAGGTCAGCATAAAGA
66 GGTAAATTTACAATGTAACCGATATAAATATACCG-GTTTATGAGAAAATA-GTCAGCATAAAGT
* * * *
62352 ATCGACACTTGTTAAATTTGTGTCGATACATTTTGTCCATAAT-ATATG-CCAAACGGGGTACAC
129 ATCGACACTTATTAAATTTGTGTCGATAC-TTTTGTCCAGAATGA-ATGCCCAAACGAGGTGCAC
* *
62415 ACATAGA
192 GCATAAA
* * * * * *
62422 GTGTCAATATATTTATTAAAAGTATCGAACCCAAAAACATCGAAA-CAAAAATTACAATGTGATA
1 GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
* * *
62486 GGTAAATTTACAATGTACCCGATATAAATATATCGGTTTATGAGAAAATTATGTCTA--A-ATAG
66 GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTATGAGAAAA-TA-GTC-AGCATAAAG
* * * * *
62548 TATCGACATTTTTTTAGTTTGTGTCGATACTTTT-TCCAGAATGAAATACGAATGCTC-AACGAG
128 TATCGACACTTATTAAATTTGTGTCGATACTTTTGTCC---A-G-AAT--GAATGCCCAAACGAG
* *
62611 ATGCAAGCATAAA
186 GTGCACGCATAAA
* ** * *
62624 GTGTCGATACATTTA--AAATTGTATCGATCTAAAAAACATCGAAACCGATAATAATAATGTAAT
1 GTGTCGATACATTTATTAAA-AGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAAT
* * * * *
62687 ATGTAAATTTGCAATGTTACCGGTATAAATATACCAGTTTA
65 AGGTAAATTTACAATGTAACCGATATAAATATACCGGTTTA
62728 CTTCGAAAAT
Statistics
Matches: 416, Mismatches: 64, Indels: 44
0.79 0.12 0.08
Matches are distributed among these distances:
195 3 0.01
196 4 0.01
197 74 0.18
198 92 0.22
199 130 0.31
200 14 0.03
201 21 0.05
202 76 0.18
203 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.15, T:0.30
Consensus pattern (198 bp):
GTGTCGATACATTTATTAAAAGTATCGATCCCAAAAACATCGAAACCAATAATTATAATGTAATA
GGTAAATTTACAATGTAACCGATATAAATATACCGGTTTATGAGAAAATAGTCAGCATAAAGTAT
CGACACTTATTAAATTTGTGTCGATACTTTTGTCCAGAATGAATGCCCAAACGAGGTGCACGCAT
AAA
Found at i:62843 original size:64 final size:64
Alignment explanation
Indices: 62764--62883 Score: 204
Period size: 64 Copynumber: 1.9 Consensus size: 64
62754 TACCTATTAC
* *
62764 ATTATATAAGAGCTACCAAATATGTTATTGTACTTTATAATATTTCCGGTTAAATGCCTGTTTT
1 ATTATATAAGAGCTACCAAATATGTTATTGTACTTAATAATATTTCCGATTAAATGCCTGTTTT
* *
62828 ATTATATAAGCGCTACCTAATATGTTATTGTACTTAATAATATTTCCGATTAAATG
1 ATTATATAAGAGCTACCAAATATGTTATTGTACTTAATAATATTTCCGATTAAATG
62884 ATATAACATT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (64 bp):
ATTATATAAGAGCTACCAAATATGTTATTGTACTTAATAATATTTCCGATTAAATGCCTGTTTT
Done.