Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007538.1 Hibiscus syriacus cultivar Beakdansim tig00021095_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149175

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4307--4484
85
2.1
85
95
0
320
30
20
16
31
1.95
4307--4516
85
2.5
84
88
3
242
32
21
15
30
1.94
4544--4643
2
51.0
2
94
4
177
51
0
1
48
1.07
10434--10489
15
3.7
15
90
2
76
8
21
10
58
1.58
24690--24865
90
2.0
88
90
2
280
44
7
11
36
1.69
31491--31668
90
2.0
90
92
0
293
44
7
10
37
1.67
33686--33723
20
1.9
20
88
0
58
36
2
0
60
1.11
37650--38058
194
2.1
194
81
2
464
36
11
11
39
1.79
42738--42770
17
1.9
17
93
0
57
36
15
15
33
1.88
51980--52056
3
25.7
3
74
10
68
62
1
0
36
1.04
52241--52391
53
2.8
52
84
4
185
20
25
21
32
1.98
52401--52470
36
1.9
36
85
0
95
21
21
20
37
1.95
55456--55494
6
6.5
6
87
0
51
46
12
20
20
1.83
58261--58307
15
3.1
15
87
6
76
59
17
0
23
1.37
59592--59648
3
19.0
3
85
7
80
28
0
3
68
1.06
61033--61079
3
16.0
3
91
4
78
29
0
2
68
1.02
61898--61957
23
2.5
24
73
17
63
28
6
0
65
1.18
65141--65172
15
2.1
15
100
0
64
25
18
6
50
1.70
90166--90197
16
2.0
16
100
0
64
25
31
25
18
1.98
92072--92101
15
1.9
16
93
6
53
53
13
6
26
1.64
94841--94930
44
2.0
44
86
0
126
24
21
22
32
1.98
101718--101847
44
3.0
44
86
0
170
22
24
21
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
109849--109910
18
3.8
16
75
16
56
64
3
8
24
1.36
110519--110553
13
2.7
13
95
0
61
0
14
20
65
1.26
110943--111001
19
3.0
20
71
28
56
71
0
3
25
1.02
111015--111185
34
4.9
35
77
12
158
45
9
2
42
1.49
111015--111185
69
2.4
70
87
6
240
45
9
2
42
1.49
118596--118655
21
2.7
23
70
17
63
63
1
6
28
1.29
127831--127890
21
2.7
23
70
17
63
63
1
6
28
1.29
135481--135745
38
7.1
38
83
5
308
44
4
6
44
1.50
135481--135745
74
3.5
76
84
6
328
44
4
6
44
1.50
135862--135914
4
13.2
4
83
15
65
20
0
0
79
0.74
135884--135920
6
6.2
6
87
12
58
16
0
0
83
0.64
135848--135920
12
5.6
13
81
16
73
21
1
0
76
0.86
137901--137927
11
2.5
11
100
0
54
55
0
7
37
1.28

Tables:   1

The End!