genome.fa.s7539.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007539.1 Hibiscus syriacus cultivar Beakdansim tig00021103_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114851

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5178--5223	20	2.3	20	96	0	83	21	34	8	34	1.84
9015--9048	15	2.3	15	89	0	50	5	47	26	20	1.73
9317--9380	33	1.9	33	81	6	76	20	18	40	20	1.91
11051--11129	21	4.0	20	71	23	60	64	1	1	32	1.09
11069--11102	9	3.9	9	92	7	61	64	0	0	35	0.94
11065--11102	17	2.3	17	95	4	69	65	0	0	34	0.93
20932--20975	20	2.2	19	84	8	52	38	2	34	25	1.68
27530--27582	15	3.6	15	70	14	56	67	1	24	5	1.22
27533--27588	29	1.9	29	100	0	112	64	1	26	7	1.29
28231--28291	30	1.9	33	83	9	83	40	6	0	52	1.27
29204--29262	31	1.9	31	89	0	91	40	5	10	44	1.60
29287--29329	22	2.0	22	100	0	86	51	13	0	34	1.42
29289--29337	22	2.2	22	88	3	71	55	14	0	30	1.40
29277--30050	54	14.4	54	78	11	494	52	12	0	34	1.39
29309--30005	32	25.7	30	66	30	307	52	12	0	34	1.40
29292--29763	80	5.9	80	88	8	653	52	13	0	33	1.40
29470--29549	14	5.0	16	69	22	69	55	10	0	35	1.34
29501--29973	80	6.0	76	79	13	446	52	12	0	34	1.40
29533--29597	22	3.0	22	95	0	121	50	12	0	36	1.40
29309--29973	188	3.4	192	79	12	696	52	12	0	34	1.40
29611--29659	22	2.2	22	85	3	62	57	12	0	30	1.36
29665--29739	22	3.2	23	75	17	82	54	17	0	28	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29501--29951	134	3.4	132	86	9	600	52	12	0	34	1.40
29743--29785	22	2.0	22	100	0	86	51	13	0	34	1.42
29745--29793	22	2.2	22	88	3	71	55	14	0	30	1.40
29856--29928	22	3.3	22	66	19	53	54	16	0	28	1.42
29931--29973	22	2.0	22	95	0	77	51	11	0	37	1.39
29933--29981	22	2.2	22	85	3	62	55	12	0	32	1.37
30004--30147	15	9.0	15	76	15	137	50	2	0	45	1.21
29976--30132	69	2.3	67	88	7	221	51	4	0	43	1.26
30500--30524	3	8.3	3	100	0	50	36	0	0	64	0.94
31523--31598	31	2.4	31	80	2	89	26	31	27	14	1.95
31476--31598	63	2.0	63	82	6	151	25	29	28	17	1.97
34439--34469	5	6.2	5	100	0	62	0	22	58	19	1.40
34437--34507	13	5.9	13	83	8	73	15	18	47	18	1.82
36550--36625	31	2.4	31	80	2	89	26	31	27	14	1.95
36503--36625	63	2.0	63	82	6	151	25	29	28	17	1.97
39458--39483	5	5.2	5	100	0	52	0	23	57	19	1.40
39473--39521	13	3.8	13	86	0	71	18	18	44	18	1.87
47123--47180	29	2.0	29	86	0	80	13	34	27	24	1.93
47219--47289	10	6.7	10	76	23	74	23	38	28	9	1.87
47222--47249	14	2.0	14	100	0	56	21	42	28	7	1.79
47236--47289	20	2.7	20	100	0	108	24	37	29	9	1.86
47277--47328	23	2.3	23	89	0	77	25	26	38	9	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47284--47336	23	2.3	24	87	9	83	28	24	35	11	1.90
47354--47409	29	1.9	29	96	0	103	19	30	37	12	1.89
48499--48538	2	20.0	2	100	0	80	50	0	0	50	1.00
48828--48865	18	2.1	18	85	9	51	47	0	2	50	1.15
53936--54004	23	3.0	23	84	0	93	24	26	27	21	1.99
54538--54603	31	2.1	31	100	0	132	42	18	9	30	1.81
54636--54673	20	1.9	20	88	0	58	10	28	34	26	1.90
60752--60820	23	3.0	23	84	0	93	27	26	26	20	1.99
65165--65349	31	6.0	31	96	1	327	20	19	22	37	1.94
69362--69515	31	5.0	31	96	1	274	19	19	22	38	1.94
75798--75846	21	2.4	21	83	10	66	51	2	2	44	1.24
75869--75927	31	1.9	31	92	0	100	42	1	8	47	1.44
78883--78972	6	15.5	6	85	6	105	0	17	51	31	1.46
78886--78928	8	5.1	8	78	10	50	0	25	51	23	1.49
95786--96329	271	2.0	271	96	0	998	28	17	26	27	1.98
97045--97120	29	2.6	29	91	0	116	15	34	28	21	1.94
97113--97154	21	2.0	21	86	9	59	4	47	11	35	1.61
99016--99079	3	22.0	3	78	12	71	29	1	4	64	1.23
99016--99078	26	2.4	25	76	10	65	28	1	4	65	1.22
102663--102724	32	2.0	32	96	3	117	14	14	9	61	1.57
103389--103422	16	2.2	16	89	5	52	17	8	5	67	1.37
104056--104135	26	3.3	25	70	19	80	25	25	10	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105626--105682	23	2.4	23	77	8	62	36	10	5	47	1.61
106394--106687	156	1.9	156	85	4	414	32	17	10	39	1.83
106550--106788	105	2.3	102	82	7	279	30	19	11	38	1.87
106734--106818	36	2.4	36	84	4	109	30	21	11	36	1.89
107096--107193	29	3.4	27	78	14	99	25	12	14	47	1.78
107110--107198	29	3.1	29	88	8	128	30	12	12	44	1.79
107281--107348	30	2.3	30	87	5	93	38	10	11	39	1.76
107434--107564	30	4.1	30	71	14	111	33	12	12	40	1.82
107137--107520	150	2.6	150	95	1	684	32	12	14	41	1.83
107451--107618	67	2.5	67	96	0	302	30	13	11	44	1.79
107481--107607	37	3.6	37	69	22	112	31	12	11	44	1.77
107393--107569	96	1.9	95	84	8	243	33	12	14	40	1.83
108597--108675	27	2.9	28	81	11	92	25	16	15	43	1.87
108695--108941	40	5.7	41	70	18	146	24	34	19	21	1.96
108733--108938	43	4.7	43	72	17	163	25	33	19	20	1.96
108681--108948	134	2.0	134	92	0	446	25	33	19	21	1.97
108685--109038	134	2.7	133	85	3	403	25	30	19	24	1.98
109227--109290	3	22.0	3	78	12	71	29	3	3	64	1.24
109227--109289	26	2.4	26	81	5	83	28	3	3	65	1.24

Tables:   1

The End!