genome.fa.s7540.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007540.1 Hibiscus syriacus cultivar Beakdansim tig00021125_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74189

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4238--4274	14	2.6	14	100	0	74	35	13	21	29	1.92
16754--16786	3	11.0	3	93	0	57	63	0	3	33	1.10
17477--17533	24	2.4	24	90	0	87	12	42	5	40	1.65
27979--28078	37	2.8	36	85	10	134	43	13	16	28	1.84
28462--28542	34	2.4	34	81	8	94	34	3	4	56	1.38
28528--28552	2	12.5	2	100	0	50	48	0	0	52	1.00
28610--28647	20	1.9	20	88	0	58	26	7	2	63	1.35
28655--28689	16	2.1	18	89	10	56	25	8	0	65	1.21
31881--31914	16	2.1	16	89	10	52	76	8	14	0	1.01
32610--32655	22	2.1	22	95	0	83	36	30	10	21	1.88
33053--33088	18	2.0	18	88	0	54	19	8	30	41	1.81
33526--33849	72	4.6	73	76	10	239	26	19	14	39	1.91
33568--33849	36	8.0	36	80	8	321	25	19	14	40	1.89
33624--33812	102	1.9	102	89	2	299	26	18	13	40	1.88
33588--33912	138	2.4	137	85	2	463	27	20	12	39	1.89
33807--33981	67	2.6	65	84	6	217	32	22	9	36	1.86
33572--33878	174	1.8	168	83	8	397	27	19	13	39	1.89
33798--33980	68	2.7	67	84	4	219	30	22	9	37	1.86
34585--35245	105	6.3	105	91	2	963	33	26	18	22	1.96
35795--35894	37	2.8	36	86	10	143	43	13	17	27	1.85
36278--36362	34	2.5	35	81	9	104	36	3	3	56	1.34
36344--36374	2	15.5	2	93	0	53	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36475--36509	16	2.1	18	89	10	56	25	8	0	65	1.21
36459--36520	26	2.4	26	83	5	72	22	6	1	69	1.20
43866--43970	37	3.0	37	70	18	125	46	5	6	40	1.54
47505--47558	20	2.8	20	91	2	83	48	22	16	12	1.80
47567--47780	20	10.6	20	75	6	198	39	25	16	18	1.92
47567--47778	41	5.2	41	89	1	302	39	25	16	18	1.91
48341--48412	20	3.6	19	83	5	81	51	18	16	13	1.77
48356--48419	21	3.1	21	84	6	87	51	17	20	10	1.75
48401--48465	14	4.3	14	73	17	58	46	21	23	9	1.80
48396--48465	33	2.1	33	97	0	131	47	20	22	10	1.79
48477--48564	19	4.8	19	77	16	105	11	20	18	50	1.77
48477--48564	33	2.4	37	85	10	121	11	20	18	50	1.77
48501--48562	20	3.2	20	86	4	90	12	19	16	51	1.76
48947--49026	19	4.4	19	78	16	98	16	20	16	47	1.83
48947--49079	52	2.5	53	85	3	160	16	22	18	42	1.89
49031--49085	20	2.8	20	94	0	92	21	23	23	30	1.99
50003--50242	20	11.9	19	69	15	137	21	19	23	36	1.95
50006--50219	40	5.3	40	91	0	311	19	19	23	37	1.94
50009--50219	60	3.5	59	80	8	228	19	19	23	36	1.95
50231--50280	20	2.5	20	90	6	75	14	18	24	44	1.86
50009--50280	40	6.8	40	83	5	271	19	19	23	37	1.94
50332--50383	20	2.6	20	78	6	61	17	15	32	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58910--58940	6	5.3	6	96	3	55	45	16	19	19	1.86
60785--60814	2	15.0	2	100	0	60	50	0	0	50	1.00
61523--61667	59	2.4	59	85	5	204	31	17	18	31	1.95

Tables:   1

The End!