genome.fa.s7543.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007543.1 Hibiscus syriacus cultivar Beakdansim tig00021131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103926

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8863--8901	18	2.1	19	85	4	53	20	7	5	66	1.36
15360--15522	81	2.0	81	98	0	317	28	27	9	34	1.89
16725--16764	6	6.3	6	83	11	53	17	20	15	47	1.83
16731--16789	20	2.9	20	84	2	73	18	25	15	40	1.90
21062--21102	20	2.0	20	90	0	64	19	31	17	31	1.95
26672--26712	20	2.0	20	95	0	73	19	31	19	29	1.96
37078--37112	18	1.9	18	100	0	70	48	17	17	17	1.81
39759--39787	12	2.3	13	94	5	51	65	0	20	13	1.26
45744--45945	79	2.6	79	85	9	281	32	11	3	51	1.55
47048--47148	40	2.5	40	83	4	114	33	9	2	53	1.49
47787--47821	18	1.9	18	94	0	61	22	28	22	25	1.99
48590--48677	39	2.3	39	81	0	104	19	27	17	36	1.94
51632--51666	18	1.9	18	94	0	61	22	28	22	25	1.99
53413--53460	23	2.1	23	88	0	69	16	20	22	39	1.92
55721--55765	23	2.0	23	86	0	63	26	28	24	20	1.99
55744--56047	149	2.0	149	97	0	572	34	20	17	27	1.95
57641--57685	21	2.1	21	87	0	63	15	24	28	31	1.96
60950--60994	23	2.0	23	86	0	63	26	28	24	20	1.99
60973--61275	149	2.0	148	96	0	561	34	19	17	28	1.95
62261--62295	18	1.9	18	88	11	54	22	17	5	54	1.64
62875--62919	21	2.1	21	87	0	63	15	24	28	31	1.96
66844--66879	16	2.2	16	90	0	54	30	11	25	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67022--67064	18	2.4	18	92	0	68	16	16	18	48	1.81
74270--74303	2	17.0	2	100	0	68	50	0	0	50	1.00
75110--75163	20	2.7	19	75	8	63	33	31	18	16	1.93
75110--75225	21	5.6	21	66	7	58	33	25	19	20	1.97
75254--75295	21	2.0	21	90	0	66	38	19	16	26	1.92
75269--75356	20	4.3	21	72	16	67	38	21	17	22	1.93
75314--75415	20	5.1	20	88	4	125	38	21	18	21	1.94
75331--75441	40	2.8	40	86	6	138	35	19	19	25	1.96
76302--76355	24	2.2	24	93	0	90	20	18	20	40	1.91
78870--79036	33	4.8	33	77	9	181	43	17	22	15	1.87
79036--79081	19	2.4	19	88	0	65	15	15	26	43	1.85
79054--79130	19	4.3	19	71	18	67	15	20	18	45	1.85
80608--80677	21	3.3	21	70	4	61	20	20	35	24	1.96
80608--80730	42	2.9	41	80	7	122	22	17	36	22	1.95
81127--81233	19	5.8	19	74	12	89	47	18	22	11	1.80
81230--81273	19	2.3	19	92	0	70	11	15	29	43	1.82
81245--81369	33	3.8	33	91	2	191	9	20	24	44	1.81
81240--81409	19	9.7	19	70	19	95	11	19	24	45	1.82
81297--81354	14	3.8	14	71	20	53	10	24	22	43	1.84
81457--81836	94	4.1	94	94	1	656	47	18	11	21	1.80
83539--83594	20	2.8	20	84	10	87	39	21	25	14	1.91
83592--83717	19	6.7	19	95	0	209	46	23	17	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83730--83801	20	3.6	19	81	5	81	11	16	20	51	1.75
84356--84551	20	9.7	20	77	12	147	19	18	23	38	1.93
84358--84612	40	6.3	41	79	8	229	19	18	23	38	1.93
84560--84612	20	2.7	20	91	5	81	13	18	24	43	1.86
84703--84755	19	2.8	19	97	0	97	11	16	20	50	1.76
89292--89496	79	2.6	79	87	6	308	32	12	3	51	1.56
90615--90709	43	2.3	41	83	5	111	33	7	3	55	1.43
91347--91381	18	1.9	18	88	0	52	22	25	22	28	1.99
96170--96207	20	1.9	20	88	0	58	44	13	18	23	1.85
96962--97009	23	2.1	23	88	0	69	16	20	22	39	1.92
97028--97084	24	2.4	24	81	0	78	24	17	21	36	1.94
101769--101811	16	2.7	16	100	0	86	32	11	30	25	1.91
101950--101990	18	2.3	18	95	0	73	17	19	19	43	1.88

Tables:   1

The End!