Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007545.1 Hibiscus syriacus cultivar Beakdansim tig00021147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59117

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--270
54
5.1
54
88
4
392
35
16
25
22
1.94
240--657
55
7.7
55
87
7
513
33
14
22
28
1.94
240--633
108
3.6
108
86
7
509
33
14
23
28
1.94
2766--2790
12
2.1
12
100
0
50
16
44
16
24
1.86
6756--6822
5
13.2
5
77
14
59
74
4
1
19
1.07
6752--6809
17
3.3
17
77
20
57
75
3
1
18
1.03
6745--6818
25
2.9
25
78
11
71
74
5
1
18
1.08
6756--6822
20
3.3
20
77
20
68
74
4
1
19
1.07
11805--11862
28
2.1
28
80
6
64
8
12
1
77
1.06
14413--14478
5
13.2
5
75
12
64
72
4
3
19
1.15
16545--16647
41
2.5
41
80
4
118
32
22
21
24
1.98
16545--16665
42
2.9
42
78
8
131
33
22
19
24
1.97
17893--17956
5
12.6
5
77
12
60
76
3
3
17
1.04
20076--20188
41
2.7
41
82
8
140
30
24
18
25
1.98
19830--20370
254
2.1
259
87
5
783
31
20
19
29
1.97
25082--25225
57
2.5
58
83
1
182
39
17
11
31
1.85
25260--25378
42
2.8
42
73
2
114
34
17
18
29
1.94
26111--26456
173
2.0
173
93
0
584
30
21
17
31
1.96
31021--31492
231
2.1
225
88
6
691
27
13
19
38
1.90
31077--31554
231
2.1
218
79
10
532
28
13
19
38
1.90
38851--38877
8
3.4
8
100
0
54
11
11
14
62
1.53
39008--39145
35
3.9
35
81
3
170
36
20
22
20
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39005--39145
71
2.0
71
90
2
221
37
19
22
19
1.94
40299--40333
16
2.2
16
89
0
52
25
0
2
71
1.00
41130--41199
32
2.2
33
94
2
124
40
4
5
50
1.46
41621--41660
16
2.4
16
87
4
53
30
2
0
67
1.04
41616--41666
26
2.0
26
84
7
68
29
1
0
68
1.00
54588--54679
34
2.7
35
85
9
118
36
18
23
20
1.94

Tables:   1

The End!