genome.fa.s7547.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007547.1 Hibiscus syriacus cultivar Beakdansim tig00021149_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72016

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4300--4495	95	2.1	96	80	2	216	34	13	22	30	1.92
4910--5270	47	7.7	47	88	4	514	42	10	23	23	1.85
4967--5235	20	11.8	20	66	24	99	42	10	25	22	1.85
4917--5271	139	2.5	140	88	5	509	42	10	23	23	1.85
9722--9756	2	17.5	2	93	0	61	45	2	0	51	1.16
13347--13519	91	1.9	91	86	4	251	34	15	15	35	1.88
17186--17375	95	2.0	96	83	3	240	34	16	22	26	1.95
17186--17401	95	2.3	96	81	4	222	34	16	22	26	1.95
18325--18392	23	3.0	23	78	6	75	47	17	8	26	1.77
19072--19143	29	2.5	28	82	13	83	41	22	5	30	1.76
19181--19240	18	3.4	18	90	4	104	11	23	48	16	1.79
19175--19204	13	2.3	13	100	0	60	13	23	46	16	1.82
19243--19297	10	5.6	10	85	10	78	34	29	21	14	1.93
19243--19298	19	2.9	19	87	10	78	33	28	21	16	1.95
25539--25602	24	2.7	24	77	0	65	50	15	9	25	1.74
26285--26356	29	2.5	28	82	13	83	41	22	5	30	1.76
26387--26417	13	2.5	13	94	5	55	12	25	48	12	1.77
26394--26453	18	3.4	18	90	4	104	11	23	48	16	1.79
26456--26531	10	7.6	10	87	10	111	35	28	21	14	1.92
26456--26531	21	3.8	20	91	6	111	35	28	21	14	1.92
27349--27765	47	8.7	47	85	5	505	43	11	23	21	1.85
27409--27489	20	3.7	20	69	20	63	40	13	25	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27384--27661	27	11.3	26	69	20	154	43	12	23	20	1.85
27429--27661	74	3.1	74	73	9	249	43	13	23	19	1.86
27352--27730	148	2.6	141	86	5	542	43	11	24	20	1.85
27384--27759	195	1.9	197	88	2	569	43	11	22	21	1.85
35673--35723	25	2.0	25	85	7	68	27	17	23	31	1.97
43729--43866	71	2.0	70	92	1	231	39	14	9	36	1.79
59211--59249	18	2.1	19	85	4	53	20	7	5	66	1.36
65709--65871	81	2.0	81	98	0	317	28	27	9	34	1.89
67063--67099	6	6.3	6	93	6	67	16	16	16	51	1.77
67063--67098	11	3.2	11	96	4	63	16	16	16	50	1.79
67063--67099	17	2.1	18	95	5	67	16	16	16	51	1.77

Tables:   1

The End!