genome.fa.s7548.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007548.1 Hibiscus syriacus cultivar Beakdansim tig00021165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60634

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
320--409	33	2.7	33	89	3	128	20	33	31	15	1.93
31--598	163	3.4	169	91	5	928	17	33	31	16	1.93
493--682	33	5.6	33	76	12	188	17	35	31	15	1.91
485--703	105	2.1	105	95	1	395	16	34	32	15	1.91
1067--1098	11	2.9	11	95	0	55	9	40	37	12	1.75
8916--9487	166	3.4	167	92	3	949	16	34	32	16	1.92
9219--9302	32	2.6	32	88	3	116	20	35	28	15	1.93
9387--9573	33	5.6	33	76	13	186	17	35	31	16	1.91
9413--9718	105	3.0	104	81	11	295	16	34	34	14	1.89
17937--18021	33	2.6	33	88	1	118	20	34	29	16	1.94
17803--18376	167	3.4	168	94	2	989	17	33	32	16	1.92
18104--18187	33	2.6	33	90	3	127	20	34	29	15	1.93
18271--18459	33	5.6	33	76	13	179	17	35	30	15	1.91
18263--18482	105	2.1	104	94	2	388	16	35	32	15	1.91
18843--18874	11	2.9	11	95	0	55	9	40	37	12	1.75
26844--26928	33	2.6	33	88	1	118	20	34	29	16	1.94
26712--27283	167	3.4	168	93	3	962	17	33	32	16	1.92
27012--27094	32	2.6	32	90	1	123	20	36	27	15	1.93
27179--27366	33	5.6	33	76	14	179	17	36	30	15	1.91
27171--27388	104	2.1	104	94	2	384	16	34	33	16	1.91
27756--27787	11	2.9	11	95	0	55	9	40	37	12	1.75
35764--35848	33	2.6	33	88	1	118	20	34	29	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35628--36205	168	3.4	170	94	1	1015	17	33	32	16	1.92
35933--36016	32	2.6	32	88	3	116	20	35	28	15	1.93
36100--36286	33	5.6	32	77	13	182	17	35	31	15	1.91
36092--36308	105	2.1	103	93	3	373	16	34	33	15	1.91
36238--36439	94	2.1	99	87	7	288	17	34	35	12	1.88
44689--44773	33	2.6	33	88	1	118	20	34	29	16	1.94
44559--45127	167	3.4	167	94	2	974	16	34	33	16	1.91
44856--44940	33	2.6	33	90	1	127	20	35	29	15	1.93
45022--45211	33	5.6	33	77	12	197	16	35	31	15	1.91
45020--45233	106	2.0	105	97	0	401	16	35	33	15	1.90
45602--45633	11	2.9	11	95	0	55	9	40	37	12	1.75
53644--53728	33	2.6	33	88	1	118	20	34	29	16	1.94
53507--54087	169	3.4	170	95	1	1042	17	33	33	16	1.92
53813--53896	32	2.6	32	88	3	116	20	35	28	15	1.93
53981--54171	33	5.6	33	77	11	197	17	35	31	15	1.91
53981--54171	65	2.8	66	74	13	197	17	35	31	15	1.91
53973--54193	106	2.1	106	97	0	415	16	34	33	15	1.91
54562--54593	11	2.9	11	95	0	55	9	40	37	12	1.75

Tables:   1

The End!