genome.fa.s7549.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007549.1 Hibiscus syriacus cultivar Beakdansim tig00021166_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66916

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5842--5902	28	2.3	27	85	5	79	29	1	24	44	1.63
7639--7868	68	3.4	67	81	3	237	22	26	20	30	1.98
8103--8151	25	1.9	26	83	4	64	38	16	12	32	1.86
8027--8882	76	11.3	76	84	3	1037	40	20	10	27	1.86
8025--8882	151	5.7	152	83	3	1011	40	20	10	27	1.86
8027--8882	227	3.8	228	85	3	1075	40	20	10	27	1.86
17456--17507	25	2.1	25	88	0	77	19	25	25	30	1.98
17438--17485	18	2.7	18	96	0	87	20	20	25	33	1.97
18305--18466	39	4.2	39	84	3	155	19	25	24	30	1.98
18317--18500	78	2.4	78	79	1	181	20	25	23	30	1.98
18401--18500	39	2.6	38	85	6	121	24	27	22	27	1.99
24564--24794	39	5.9	39	85	3	241	17	24	25	32	1.97
24564--24794	78	3.0	77	82	3	266	17	24	25	32	1.97
26700--26748	2	25.0	2	95	4	91	51	0	0	48	1.00
28600--28778	69	2.6	68	83	5	225	20	27	23	27	1.99
28741--28809	31	2.2	31	94	0	120	13	27	24	34	1.92
28667--28864	100	2.0	100	84	4	256	18	27	22	31	1.97
29047--29570	76	6.9	76	85	1	658	41	21	10	27	1.85
29047--29570	228	2.3	227	86	1	726	41	21	10	27	1.85
29443--29705	134	2.0	134	85	0	355	39	20	10	28	1.86
29577--29717	76	1.9	76	90	0	228	38	19	9	32	1.84
30899--30971	18	4.2	17	87	6	110	17	46	21	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30935--30959	13	1.9	13	100	0	50	16	48	24	12	1.79
30962--30998	7	5.3	7	93	0	65	13	29	27	29	1.94
35565--35596	7	4.6	7	92	0	55	31	28	28	12	1.93
35587--35657	18	4.1	17	87	3	97	15	22	43	18	1.87
35599--35623	13	1.9	13	100	0	50	12	24	48	16	1.79
37781--37856	24	3.2	24	86	3	82	44	19	13	22	1.85
37798--37909	24	4.7	24	85	6	147	40	18	16	25	1.91
37829--37931	48	2.1	48	82	10	122	42	17	14	25	1.87
38778--38839	24	2.6	24	89	2	90	22	16	19	41	1.89
40256--40329	11	6.4	11	73	21	62	51	2	0	45	1.15
40265--40328	18	3.5	20	81	14	75	50	3	0	46	1.17
40540--40589	15	3.5	15	75	10	59	50	6	6	38	1.52
40545--40589	13	3.3	13	81	6	54	48	4	6	40	1.49
40561--40618	9	6.8	9	71	11	50	55	3	8	32	1.47
40579--40618	18	2.2	18	100	0	80	60	5	5	30	1.40
40611--40728	36	3.2	36	70	13	105	46	1	5	45	1.37
40651--40683	13	2.4	14	85	5	50	51	6	3	39	1.42
40715--40770	30	1.9	28	85	7	76	48	1	7	42	1.41
40985--41054	20	3.5	20	73	11	70	40	7	11	41	1.69
41167--41205	7	5.6	7	100	0	78	46	41	0	12	1.42
41296--41389	20	4.5	22	81	13	94	42	7	7	42	1.61
41296--41374	39	2.0	39	82	4	97	41	7	7	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41435--41487	21	2.5	21	82	11	72	37	7	5	49	1.55
41414--41516	22	4.8	22	69	21	83	35	5	8	49	1.58
41530--41640	21	5.2	21	68	11	64	45	4	2	47	1.37
41638--41777	6	24.0	6	73	18	86	46	1	1	50	1.19
41618--41740	31	4.2	30	73	19	100	45	2	1	50	1.24
41637--41754	51	2.3	54	75	14	131	45	1	1	50	1.21
41505--41779	66	4.2	64	75	16	205	44	3	2	50	1.30
41699--41810	22	5.0	22	73	23	92	50	0	0	49	1.06
41667--41798	15	9.2	15	72	23	99	47	0	0	50	1.11
41669--41803	57	2.4	55	80	15	141	49	0	0	48	1.11
42275--42301	10	2.7	10	100	0	54	11	33	7	48	1.67
42608--42834	6	38.3	6	76	4	156	42	46	5	5	1.50
42607--42843	29	8.2	29	75	8	119	41	46	5	5	1.52
42800--42860	18	3.4	18	76	0	59	39	40	9	9	1.72
43137--43348	102	2.1	102	93	0	370	20	9	19	50	1.76
46129--46159	9	3.6	9	91	8	55	12	9	0	77	0.99
46450--46474	9	2.8	9	100	0	50	40	0	0	60	0.97
46483--46529	14	3.7	14	71	26	50	51	4	0	44	1.21
46481--46530	23	2.1	24	96	3	93	48	4	0	48	1.20
46786--46824	16	2.4	16	91	0	69	38	12	30	17	1.88
46875--46995	64	1.9	65	86	8	176	16	19	31	32	1.94
49135--49224	46	2.0	46	90	0	144	30	15	6	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49413--49582	60	2.9	60	77	10	163	41	5	21	30	1.77
58096--58124	15	1.9	15	100	0	58	34	20	20	24	1.97
58174--58221	19	2.5	19	96	0	87	39	8	20	31	1.82
58678--58786	14	7.4	14	71	13	85	32	8	20	39	1.82
58645--58786	44	3.2	44	83	2	176	30	8	21	38	1.83
58866--59006	23	6.2	23	72	10	101	20	24	22	32	1.98
58871--58992	44	2.7	46	83	2	140	18	24	23	32	1.97
58871--59000	46	2.9	45	83	2	145	20	23	23	33	1.97
58972--59028	24	2.4	23	82	8	69	24	19	19	36	1.94
60688--60728	18	2.2	18	86	4	55	26	29	26	17	1.97
62315--63453	4	289.8	4	90	7	1851	25	0	24	50	1.50

Tables:   1

The End!