genome.fa.s755.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000755.1 Hibiscus syriacus cultivar Beakdansim tig00001458_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86145

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1059--1218	64	2.5	62	82	8	162	35	17	20	26	1.95
1651--1867	103	2.1	102	94	0	389	25	12	23	37	1.91
1884--1946	23	2.7	23	87	4	92	20	26	26	25	1.99
3744--3822	23	3.5	22	74	8	70	27	26	22	22	1.99
3740--3804	21	3.0	21	71	10	67	24	24	23	27	2.00
10381--10453	23	3.4	22	79	14	89	39	2	5	52	1.39
10367--10456	42	2.1	43	85	6	130	38	3	4	53	1.38
10439--10505	8	8.5	8	79	15	77	59	1	0	38	1.06
10552--10658	25	4.4	25	76	14	91	44	10	3	41	1.56
10597--10634	11	3.0	13	81	18	53	44	13	2	39	1.57
10609--10655	21	2.2	22	88	3	69	46	8	2	42	1.46
10633--10704	14	5.8	13	72	20	55	45	8	2	43	1.48
10644--10690	21	2.2	22	88	3	69	46	8	2	42	1.46
10608--10737	35	3.7	35	93	2	208	43	9	3	43	1.51
10748--10910	22	7.1	22	70	23	90	44	10	3	41	1.56
10849--10888	11	3.4	11	81	18	53	45	15	2	37	1.59
10842--10910	22	2.9	24	82	10	97	44	13	1	40	1.52
10666--10924	14	17.9	14	66	23	65	44	10	4	41	1.58
10899--10944	22	2.1	22	87	0	65	47	8	6	36	1.60
20932--20958	12	2.2	12	100	0	54	40	0	0	59	0.98
22677--22741	31	2.1	31	85	5	87	32	13	10	43	1.79
23368--23419	21	2.5	21	81	3	61	38	19	25	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23408--23542	20	6.7	20	80	7	121	33	24	17	24	1.96
23405--23536	61	2.2	61	87	0	183	35	24	16	23	1.95
23710--23750	21	2.0	21	100	0	82	24	46	14	14	1.82
24015--24073	20	3.0	20	87	0	73	16	18	22	42	1.89
24211--24265	25	2.2	24	78	15	58	20	9	18	52	1.71
25389--25433	18	2.5	18	81	0	54	28	40	15	15	1.88
25915--25960	20	2.3	20	88	0	65	36	26	21	15	1.93
25970--26024	14	3.6	14	77	17	65	49	23	16	10	1.77
25954--26044	32	2.8	33	88	3	139	46	21	18	13	1.83
26061--26118	14	3.9	14	79	16	71	10	17	24	48	1.78
26056--26134	32	2.4	33	93	2	133	12	17	22	46	1.82
26120--26162	20	2.2	20	87	4	61	18	20	20	39	1.93
26209--26273	25	2.5	26	75	12	71	23	9	16	50	1.74
28048--28083	14	2.6	14	90	0	54	30	0	22	47	1.52
28166--28204	20	2.0	20	94	0	69	46	30	10	12	1.75
28210--28274	19	3.7	19	80	15	86	44	18	23	13	1.85
28300--28388	20	4.6	20	92	4	155	15	24	25	33	1.95
28294--28388	39	2.4	39	91	5	156	14	23	25	36	1.93
28601--28651	20	2.5	20	100	0	102	19	31	19	29	1.97
29378--29431	24	2.2	24	90	0	81	22	16	20	40	1.91
31909--32039	19	7.7	19	66	23	94	43	20	22	13	1.87
31909--32035	33	3.8	33	88	4	202	43	20	22	14	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31910--32042	66	2.0	66	97	0	248	42	20	21	15	1.89
32050--32106	14	3.7	14	72	20	51	8	22	22	45	1.80
32035--32124	33	2.7	33	92	0	144	13	21	21	44	1.85
32064--32124	19	3.5	19	72	21	69	11	21	21	45	1.82
32230--32266	14	2.6	14	91	0	65	45	24	0	29	1.53
33638--33753	21	5.5	21	65	8	56	23	21	31	23	1.98
33618--33790	42	4.1	41	73	11	145	22	19	35	23	1.96
33648--33820	84	2.1	84	95	0	310	24	17	35	21	1.95
33657--33824	42	4.0	42	77	3	176	24	17	36	22	1.95
34138--34164	13	2.1	13	100	0	54	70	22	7	0	1.12
34042--34226	91	2.0	92	90	6	295	47	18	11	22	1.81
35932--36030	33	3.0	33	92	1	162	39	23	26	11	1.88
35907--36052	19	8.1	19	72	17	114	42	20	24	12	1.86
36670--36723	20	2.7	20	97	0	99	25	18	24	31	1.97
36630--36744	61	1.9	61	81	3	142	21	20	23	34	1.96
41611--41728	40	2.8	40	80	8	128	18	22	28	29	1.98
41611--41753	40	3.5	40	78	8	117	20	21	29	28	1.98
41624--41733	22	5.2	22	76	8	93	20	21	30	28	1.98
42596--42650	16	3.3	16	75	22	51	72	0	7	20	1.07
42736--42786	9	5.9	9	79	6	52	76	0	1	21	0.88
43018--43057	10	3.8	10	83	9	53	70	0	0	30	0.88
44278--44908	106	6.0	106	87	2	887	22	18	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44917--45037	43	2.8	43	94	0	206	21	13	32	33	1.92
45770--45808	16	2.5	16	87	4	53	43	12	15	28	1.83
46539--46599	24	2.5	24	89	0	95	42	1	19	36	1.61
47438--47497	10	5.9	10	77	11	59	0	10	8	81	0.87
47438--47491	18	2.9	18	79	15	65	0	9	7	83	0.82
47438--47498	31	2.0	31	87	9	90	0	9	9	80	0.91
47444--47497	13	4.2	13	79	9	58	0	11	7	81	0.87
50881--50917	19	1.9	19	89	10	58	67	0	24	8	1.17
52043--52123	24	3.3	26	75	14	75	67	1	7	23	1.23
52213--52268	13	4.4	13	80	10	62	71	0	1	26	0.96
52215--52282	26	2.5	26	83	9	75	72	0	1	26	0.94
52225--52306	9	8.7	9	70	22	53	68	1	1	29	1.05
52199--52301	28	3.6	27	81	15	100	68	0	2	27	1.09
52472--52519	22	2.2	22	85	7	62	62	0	4	33	1.14
52532--52578	23	2.0	23	84	15	62	70	0	2	27	0.99
52549--52607	10	5.8	10	75	14	50	64	3	0	32	1.10
52995--53087	37	2.5	37	85	0	114	29	13	13	43	1.84
60095--60234	70	2.0	69	91	1	226	32	14	16	37	1.89
60842--60916	25	3.0	25	79	13	75	77	8	1	13	1.05
60864--60915	16	3.3	15	76	10	50	80	7	1	9	0.97
65016--65058	20	2.1	20	83	12	52	44	6	0	48	1.29
65907--65958	22	2.4	22	96	0	95	44	25	9	21	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66015--66070	29	2.0	28	89	3	85	58	17	0	23	1.38
66421--66451	16	1.9	16	100	0	62	54	0	0	45	0.99
66943--66968	5	5.2	5	100	0	52	0	19	57	23	1.40
66988--67070	31	2.6	31	80	19	84	14	20	38	26	1.91
67977--68168	54	3.5	55	80	4	194	22	22	21	33	1.97
67976--68177	108	1.9	108	82	2	253	24	21	21	32	1.98
70703--70928	54	4.2	54	90	0	308	23	20	22	34	1.97
70779--70863	27	3.2	26	69	24	77	18	21	24	35	1.96
72880--72947	33	2.2	32	84	7	86	39	0	1	58	1.07
73091--73141	17	3.0	17	76	0	57	37	0	3	58	1.16
74718--74790	21	3.5	21	88	7	112	17	34	27	20	1.95
75301--75407	40	3.0	34	81	15	133	53	3	3	39	1.37
75304--75388	40	2.1	40	93	0	143	57	3	2	36	1.29
75332--75414	34	2.4	33	84	7	103	56	3	3	36	1.34
75810--76416	128	4.7	128	94	0	1054	33	20	24	21	1.97
76497--76537	8	5.2	8	82	5	57	36	29	0	34	1.58
82460--82493	17	2.0	17	100	0	68	17	23	5	52	1.66
85468--85535	23	2.7	26	75	11	70	57	0	2	39	1.14

Tables:   1

The End!