genome.fa.s7550.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007550.1 Hibiscus syriacus cultivar Beakdansim tig00021167_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89712

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--8337	7	1223.0	7	91	6	10000	37	43	5	12	1.68
9--11653	7	1704.7	7	90	6	9824	31	43	12	13	1.80
14889--14928	21	1.9	21	85	10	55	37	2	7	52	1.43
18944--18989	19	2.4	19	92	0	83	23	13	28	34	1.92
25628--25667	21	1.9	21	85	10	55	35	10	2	52	1.48
27331--27366	11	3.4	11	96	3	65	8	25	8	58	1.55
27331--27374	21	2.1	21	83	8	54	11	20	11	56	1.64
27579--27616	19	2.0	19	89	0	58	28	18	28	23	1.98
27596--27703	45	2.4	45	84	4	137	30	16	21	31	1.95
28725--28864	47	3.0	47	95	0	253	34	10	25	30	1.88
39457--39509	21	2.5	21	84	0	70	32	30	18	18	1.96
39519--39582	19	3.2	19	73	16	65	23	15	21	39	1.92
39505--39582	42	1.9	40	89	5	120	24	16	20	38	1.93
39702--39980	42	6.6	42	87	3	409	22	18	21	36	1.95
39744--40025	63	4.5	62	77	10	261	21	19	21	36	1.95
39702--40025	168	1.9	167	90	2	515	22	19	21	36	1.95
39912--40046	42	3.2	42	82	10	143	20	20	25	33	1.97
39702--40018	126	2.5	124	80	9	395	23	19	21	36	1.95
39702--40025	84	3.9	83	83	6	386	22	19	21	36	1.95
39912--40043	63	2.1	63	94	0	228	19	21	25	33	1.97
39702--40074	105	3.6	105	78	8	393	22	19	21	36	1.95
39965--40074	42	2.6	42	91	2	175	20	20	23	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40937--41010	21	3.5	21	80	12	89	37	18	20	22	1.94
42707--42745	12	3.2	12	81	0	51	2	61	0	35	1.10
42708--42742	18	1.9	18	88	0	52	2	62	0	34	1.10
46992--47067	40	1.9	40	91	0	125	19	9	19	51	1.73
68475--68541	29	2.2	29	81	5	80	41	8	19	29	1.82
74163--74210	18	2.8	17	81	12	55	62	16	12	8	1.53
84124--84155	16	2.0	16	100	0	64	50	6	31	12	1.65
84431--84488	27	2.1	27	100	0	116	27	25	17	29	1.97
86445--86496	23	2.3	23	89	0	77	46	11	9	32	1.73
86493--86567	30	2.5	30	91	0	123	58	13	12	16	1.63
86981--87055	21	3.6	21	77	15	84	18	20	26	34	1.95
86962--87059	41	2.4	39	82	14	110	20	19	23	36	1.95
86981--87100	62	1.9	61	85	6	161	20	18	22	38	1.93
86987--87076	41	2.2	42	91	2	146	20	17	24	37	1.93
87006--87097	21	4.4	21	77	13	100	20	17	21	40	1.92
87749--87805	27	2.1	26	81	12	62	47	14	17	21	1.82

Tables:   1

The End!