Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007552.1 Hibiscus syriacus cultivar Beakdansim tig00021192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80049

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2647--2693
20
2.3
21
92
3
78
21
8
8
61
1.51
17238--17283
23
2.0
23
86
0
65
47
4
2
45
1.34
20248--20290
21
2.0
21
86
0
59
46
11
20
20
1.82
21663--21704
3
14.0
3
100
0
84
66
0
0
33
0.92
21766--21801
2
18.0
2
94
0
63
47
0
2
50
1.15
25452--25477
7
3.7
7
100
0
52
88
0
0
11
0.52
43960--43996
19
1.9
19
88
0
56
32
27
16
24
1.96
44892--44938
24
2.0
24
91
0
76
25
21
19
34
1.96
45125--45151
3
9.0
3
100
0
54
66
0
33
0
0.92
45143--45179
14
2.6
14
91
4
56
51
21
21
5
1.68
47216--47250
18
1.9
18
88
0
52
54
22
2
20
1.58
47308--47590
140
2.0
140
97
0
539
27
13
15
42
1.85
47561--47637
20
3.8
20
87
0
118
29
20
20
28
1.98
47676--47719
20
2.2
20
95
0
79
13
18
22
45
1.84
48991--49034
20
2.2
20
83
0
52
36
22
18
22
1.95
50510--50544
18
1.9
18
94
0
61
54
25
2
17
1.57
50602--50884
140
2.0
140
97
0
539
27
13
15
42
1.85
50862--50931
20
3.5
20
88
0
113
27
22
22
27
1.99
50855--50931
40
1.9
40
94
0
136
28
20
22
28
1.98
50970--51013
20
2.2
20
95
0
79
13
18
22
45
1.84
52284--52327
20
2.2
20
87
0
61
36
25
18
20
1.95
52706--52757
22
2.4
22
90
0
86
17
13
44
25
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52926--52981
21
2.8
20
71
15
60
26
17
25
30
1.97
52903--52981
41
1.9
41
86
0
113
25
17
22
34
1.96
54495--54531
2
19.5
2
83
10
51
45
0
0
54
1.00
67079--67146
3
22.7
3
100
0
136
67
0
32
0
0.91
74606--74637
16
2.0
16
100
0
64
31
25
18
25
1.98

Tables:   1

The End!