genome.fa.s7553.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007553.1 Hibiscus syriacus cultivar Beakdansim tig00021203_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74108

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9426--9475	23	2.1	24	85	3	66	36	10	18	36	1.84
27355--27396	10	4.2	10	81	9	50	66	2	0	30	1.04
29028--29124	36	2.7	36	86	0	140	19	22	18	39	1.93
44084--44212	20	6.3	21	76	3	84	18	19	25	36	1.94
44077--44174	41	2.4	41	96	0	178	18	20	24	36	1.94
44102--44235	20	6.6	20	75	3	133	17	20	22	38	1.93
44102--44235	61	2.2	61	95	0	241	17	20	22	38	1.93
44077--44262	102	1.8	102	88	6	288	19	20	22	37	1.94
44166--44296	41	3.2	40	84	10	142	20	19	22	37	1.94
44229--44319	22	4.3	22	78	9	91	21	17	24	36	1.95
44419--44450	6	5.5	6	96	3	57	31	53	15	0	1.43
44967--45005	6	6.5	6	100	0	78	0	15	51	33	1.44
45091--45159	19	3.5	19	75	11	75	40	20	18	20	1.92
45109--45180	22	3.4	21	77	11	85	38	23	18	19	1.93
45091--45180	41	2.2	41	95	0	162	38	22	18	20	1.93
45171--45311	21	6.9	21	81	2	144	34	23	19	22	1.96
45130--45503	61	6.2	59	73	14	246	36	24	18	20	1.95
45214--45486	20	13.6	20	76	11	136	37	24	20	17	1.94
45193--45503	41	7.7	41	75	11	198	36	24	19	19	1.95
45328--45400	22	3.3	22	100	0	146	36	27	17	17	1.93
45434--45528	21	4.6	21	80	2	120	33	27	15	23	1.95
45954--46012	30	2.0	30	86	0	82	40	8	18	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53398--53464	30	2.2	31	84	10	93	44	8	17	28	1.79
61059--61083	12	2.1	12	100	0	50	56	0	28	16	1.41
63124--63162	18	2.2	18	86	4	53	28	0	15	56	1.40
66466--66503	16	2.3	16	90	4	58	26	15	26	31	1.96
66523--66555	15	2.2	15	89	10	50	21	9	6	63	1.45

Tables:   1

The End!