genome.fa.s7556.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007556.1 Hibiscus syriacus cultivar Beakdansim tig00021262_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  138814

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132--185	21	2.5	22	82	5	67	64	11	0	24	1.25
2415--2443	15	1.9	15	100	0	58	48	31	6	13	1.69
3218--3268	18	2.8	18	84	0	66	31	33	13	21	1.92
4150--4228	21	3.7	21	73	15	81	26	26	16	30	1.97
8270--8348	21	3.7	21	75	9	88	26	25	16	31	1.96
8948--8997	25	2.0	25	96	0	91	44	12	10	34	1.75
10735--10773	21	1.9	20	84	5	51	53	2	7	35	1.43
13972--14013	21	2.0	22	86	13	61	19	7	52	21	1.69
16251--16418	86	2.0	86	87	2	248	39	27	8	23	1.83
18190--18317	63	2.0	63	93	0	220	28	23	16	31	1.96
19060--19139	35	2.3	35	86	0	115	23	2	25	48	1.63
23756--23850	42	2.3	41	83	1	118	14	23	24	37	1.92
24037--24288	34	7.2	34	69	12	143	38	10	21	29	1.86
24032--24344	142	2.2	141	82	8	377	39	11	20	28	1.87
28018--28178	3	50.0	3	66	17	56	55	6	5	32	1.48
28955--29020	30	2.2	31	78	13	75	30	18	16	34	1.93
31069--31147	40	2.0	40	82	9	99	41	20	10	27	1.84
48584--48657	31	2.5	28	78	8	76	45	0	0	54	1.00
49200--49237	12	3.1	12	92	3	58	23	5	47	23	1.72
49795--49842	25	1.9	25	83	8	62	47	0	0	52	1.00
49702--50525	343	2.4	340	89	3	1241	44	5	4	45	1.47
55177--55214	5	7.6	5	87	0	58	23	0	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55957--56030	31	2.4	31	90	0	112	17	10	14	56	1.66
56757--56825	31	2.2	31	89	0	102	57	17	8	15	1.62
59444--59481	5	7.6	5	87	0	58	23	0	0	76	0.79
60227--60300	31	2.4	31	90	0	112	17	10	14	56	1.66
61027--61095	31	2.2	31	89	0	102	57	17	8	15	1.62
73557--73589	16	2.1	16	94	0	57	33	0	27	39	1.57
81009--81063	23	2.4	23	84	0	65	52	10	5	30	1.59
81589--81640	20	2.6	20	96	0	95	38	26	13	21	1.90
81631--81728	21	4.8	20	71	6	70	35	21	20	22	1.96
81696--81889	20	9.6	20	76	8	76	35	25	19	19	1.95
81692--81889	40	5.0	39	81	4	200	35	26	19	19	1.95
81696--81888	60	3.2	60	83	0	251	35	25	19	19	1.95
82269--82339	33	2.2	33	92	0	115	11	22	18	47	1.80
82460--82514	14	3.6	14	73	21	56	41	23	25	9	1.83
82460--82530	33	2.2	33	94	0	124	43	25	22	8	1.81
82526--82623	19	5.7	19	70	22	81	10	24	22	42	1.84
82548--82637	14	5.7	14	74	23	81	8	25	23	42	1.83
82531--82645	33	3.5	33	95	0	212	9	24	20	45	1.81
84341--84904	93	6.1	93	98	0	1098	22	12	18	46	1.83
84948--85076	19	7.3	19	75	17	125	45	28	17	8	1.77
84984--85076	33	2.8	32	91	4	150	46	27	18	7	1.76
84948--85076	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85072--85206	19	7.6	19	74	16	119	11	18	23	45	1.82
85094--85150	14	3.7	14	77	20	60	10	21	22	45	1.82
85077--85169	33	2.8	33	93	0	159	11	19	21	47	1.81
87129--87165	14	2.6	14	87	12	58	32	0	18	48	1.49
87271--87372	19	5.6	19	84	13	151	44	17	23	14	1.86
87401--87660	19	14.7	19	81	15	344	13	21	17	46	1.83
87379--87688	52	5.9	49	87	8	298	14	21	18	46	1.83
87401--87688	71	4.1	71	82	13	366	13	21	18	46	1.83
89972--89996	12	2.1	12	100	0	50	0	28	0	72	0.86
90171--90217	24	2.0	24	87	8	69	38	21	14	25	1.92
90900--91268	20	18.5	20	86	4	458	20	18	26	34	1.96
102219--102269	18	2.8	18	74	11	59	39	0	5	54	1.24
103421--103488	32	2.1	32	86	5	93	63	4	10	22	1.44
114101--114137	6	6.2	6	100	0	74	16	0	0	83	0.64
114150--114193	22	2.0	23	86	4	63	18	18	9	54	1.69
116699--116835	59	2.3	60	79	8	154	37	13	16	32	1.88
120496--120541	17	2.8	17	96	3	85	41	13	30	15	1.85
121257--121453	5	39.4	5	66	18	65	20	4	2	72	1.14
121253--121291	18	2.1	19	90	4	62	20	0	0	79	0.73
121307--121366	28	2.2	28	85	8	88	25	1	0	73	0.93
121396--121453	5	11.8	5	81	7	66	17	5	1	75	1.06
121303--121510	83	2.5	83	79	15	200	19	5	3	71	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121272--121510	39	6.2	38	72	19	158	19	5	3	71	1.21
121341--121510	40	4.2	39	77	19	161	19	7	3	70	1.26
125729--125860	60	2.2	61	81	6	162	37	7	22	31	1.82
129657--129732	37	2.0	38	84	2	100	27	18	21	32	1.96
133922--133947	12	2.2	12	100	0	52	34	23	26	15	1.94

Tables:   1

The End!