genome.fa.s7558.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007558.1 Hibiscus syriacus cultivar Beakdansim tig00021265_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93373

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3849--3916	32	2.1	33	94	2	120	23	13	19	44	1.85
7158--7205	20	2.4	22	83	16	68	22	20	22	33	1.97
17207--17255	24	2.0	24	100	0	98	36	10	20	32	1.86
19552--19608	29	2.0	29	89	6	89	38	17	14	29	1.89
20620--20735	57	2.0	57	100	0	232	37	14	22	25	1.92
21281--21307	13	2.1	13	100	0	54	14	40	7	37	1.74
21940--21987	19	2.6	19	80	9	55	60	2	0	37	1.09
28503--28542	21	2.0	20	85	5	53	47	5	0	47	1.24
28671--28716	21	2.2	21	88	3	67	36	19	23	19	1.95
29724--29748	12	2.1	12	100	0	50	24	28	40	8	1.83
34105--34150	11	4.2	11	83	8	58	71	4	2	21	1.14
34095--34190	20	4.5	22	75	13	69	72	3	4	19	1.14
34093--34262	22	8.6	19	70	19	77	68	2	5	22	1.23
34101--34138	11	3.2	12	85	11	51	71	5	0	23	1.07
34826--34922	37	2.6	37	87	6	151	32	10	14	42	1.79
35653--36179	106	5.0	105	85	5	660	22	18	24	33	1.96
37456--37520	2	32.5	2	100	0	130	50	0	0	49	1.00
37908--37953	11	4.2	11	83	8	58	71	4	2	21	1.14
37898--38015	20	5.5	22	69	21	65	70	3	3	22	1.17
37904--37941	11	3.2	12	85	11	51	71	5	0	23	1.07
37905--38076	15	11.5	15	67	20	67	68	1	5	23	1.21
37964--38012	22	2.2	22	89	7	73	69	2	0	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37904--38102	62	3.2	59	72	19	149	67	2	6	24	1.24
38634--38730	37	2.6	37	87	6	151	32	10	14	42	1.79
39461--39987	106	5.0	105	85	5	660	22	18	24	33	1.96
40799--40852	22	2.5	22	90	0	90	29	9	25	35	1.87
41468--41517	11	4.5	11	79	20	52	0	12	6	82	0.85
41454--41520	20	3.2	20	81	8	71	1	10	5	82	0.91
41467--41534	22	2.9	22	77	18	59	0	13	7	79	0.93
41454--41529	25	3.0	24	83	9	82	1	11	6	80	0.96
44965--45007	20	2.2	20	91	0	68	2	37	30	30	1.70
45718--45777	20	3.1	19	73	17	52	68	1	11	18	1.28
45768--45832	14	4.7	14	72	9	53	76	1	4	16	1.02
46355--46398	2	22.0	2	100	0	88	50	0	0	50	1.00
46402--46449	11	4.4	11	82	7	53	70	4	4	20	1.21
46405--46445	11	3.6	11	87	6	55	65	4	4	24	1.32
46459--46545	16	5.5	15	66	20	52	66	1	6	25	1.23
46521--46562	20	2.2	20	86	4	59	64	0	9	26	1.24
46530--46568	20	2.0	20	94	0	69	64	0	5	30	1.15
47123--47228	37	2.8	37	84	1	131	33	11	12	43	1.78
52590--52682	46	2.0	46	100	0	186	40	2	25	31	1.68
52788--52838	24	2.0	25	88	11	77	54	23	9	11	1.66
52819--52851	17	2.0	16	94	5	57	60	24	12	3	1.46
55593--55619	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57864--57955	22	4.3	21	75	10	89	57	0	2	40	1.11
57870--57939	24	3.2	24	73	26	91	57	0	2	40	1.14
57880--57943	17	3.4	17	70	25	56	54	0	3	42	1.16
57880--57952	21	3.5	21	80	12	96	54	0	2	42	1.14
57864--57946	41	2.0	41	100	0	166	56	0	2	40	1.12
59424--59475	3	17.3	3	81	15	63	63	1	0	34	1.06
59786--60478	113	6.1	113	81	6	761	28	19	15	37	1.91
59710--60468	226	3.3	235	84	5	927	27	19	14	38	1.91
61247--61350	54	1.9	54	86	0	145	29	22	12	35	1.91
65477--65524	9	5.6	9	85	9	73	0	12	0	87	0.54
65471--65524	25	2.2	25	96	3	101	0	12	0	87	0.56
67162--67345	91	2.0	91	91	0	296	21	21	9	47	1.79
68331--68369	20	2.0	20	84	0	51	64	7	10	17	1.48
68447--68484	15	2.6	14	91	4	58	60	10	15	13	1.59
68447--68488	7	6.0	7	83	10	59	57	11	16	14	1.66
71234--71325	22	4.3	21	75	10	89	57	0	1	41	1.06
71203--71265	30	2.1	29	82	11	74	66	1	1	30	1.10
71231--71309	24	3.6	23	73	25	80	59	0	1	39	1.06
71235--71322	21	4.2	20	78	12	88	56	0	1	42	1.06
71234--71316	41	2.0	41	97	0	157	56	0	1	42	1.07
71448--71472	4	6.2	4	100	0	50	76	0	0	24	0.80
72032--72078	16	2.9	17	90	9	73	6	38	0	55	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72830--72911	9	8.8	9	72	27	57	62	0	0	37	0.96
72834--72909	13	5.8	13	93	6	120	63	0	0	36	0.95
74686--74767	36	2.3	36	93	0	146	21	13	28	36	1.91
76606--76699	40	2.3	40	96	0	170	46	8	12	31	1.72
82484--82551	29	2.3	30	87	2	93	10	5	35	48	1.61
85280--85318	17	2.3	18	91	8	64	41	23	15	20	1.90
89609--89667	31	1.9	31	96	0	109	42	8	6	42	1.61

Tables:   1

The End!