genome.fa.s7559.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007559.1 Hibiscus syriacus cultivar Beakdansim tig00021370_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  198499

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1763--1799	16	2.2	17	86	13	51	0	13	8	78	0.96
2134--2201	33	2.1	33	83	5	84	30	1	36	30	1.67
10700--10768	33	2.1	33	83	5	86	31	1	36	30	1.67
15987--16016	12	2.4	13	94	5	53	0	23	0	76	0.78
16376--16444	33	2.1	33	83	5	86	31	1	36	30	1.67
18656--18712	27	2.1	27	83	6	71	59	12	15	12	1.61
19895--19937	23	1.9	21	81	13	50	32	18	13	34	1.90
23743--23793	19	2.6	20	90	3	77	43	5	15	35	1.71
24681--24740	30	2.0	31	86	3	86	53	10	8	28	1.63
29756--29825	35	1.9	37	88	5	108	34	34	4	27	1.76
29761--29864	33	3.1	33	82	9	95	30	36	1	30	1.69
34240--34343	33	3.1	33	82	9	95	30	36	1	30	1.69
38718--38821	33	3.1	33	82	9	95	30	36	1	30	1.69
39153--39254	36	2.9	36	94	1	170	32	36	4	26	1.78
39156--39240	11	7.2	11	72	22	66	31	36	3	28	1.74
39154--39270	36	3.4	34	85	11	130	30	36	3	29	1.74
39154--39293	36	4.1	33	84	9	106	30	36	2	30	1.72
38717--40061	472	2.9	472	98	0	2608	28	26	9	34	1.88
39625--39726	36	2.9	36	94	1	170	32	36	4	26	1.78
39628--39712	11	7.2	11	72	22	66	31	36	3	28	1.74
39626--39742	36	3.4	34	85	11	130	30	36	3	29	1.74
39626--39765	36	4.1	33	84	9	106	30	36	2	30	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40105--40151	25	2.0	24	84	16	62	74	8	17	0	1.05
40174--40228	28	2.0	27	82	13	67	72	5	18	3	1.18
40367--40415	23	2.1	24	81	11	57	14	22	0	63	1.30
43231--43281	19	2.6	20	90	3	77	43	5	13	37	1.69
44170--44229	30	2.0	31	86	3	86	53	10	8	28	1.63
45214--45318	36	2.9	36	94	1	176	29	4	35	30	1.78
47095--47179	11	7.2	11	72	22	66	31	36	3	28	1.74
47093--47196	36	2.9	36	95	1	183	30	36	3	28	1.75
51592--51676	11	7.2	11	72	22	66	31	36	3	28	1.74
51589--51693	36	2.9	36	95	1	185	30	36	4	28	1.78
52376--53236	432	2.0	431	96	0	1571	30	17	18	33	1.94
57573--57673	36	2.8	36	87	1	141	31	3	31	32	1.76
61917--61966	19	2.6	19	90	0	73	44	4	14	38	1.63
66073--66123	19	2.6	20	90	3	77	43	5	15	35	1.71
67012--67071	30	2.0	31	86	3	86	53	10	8	28	1.63
73001--73073	7	10.4	7	78	11	62	0	5	10	83	0.80
73006--73067	19	2.9	22	79	20	78	0	6	11	82	0.84
73005--73074	11	6.3	11	77	9	79	0	5	10	84	0.78
73012--73063	19	2.7	19	88	11	88	0	7	9	82	0.84
76032--76082	19	2.6	20	90	3	77	43	5	13	37	1.69
82224--82325	36	2.9	36	91	1	161	33	36	3	26	1.75
82227--82311	11	7.2	11	74	22	75	32	36	2	28	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82296--82364	33	2.1	33	83	5	86	30	36	1	31	1.67
82967--83015	23	2.1	24	81	11	57	14	22	0	63	1.30
87939--88040	36	2.9	36	92	1	161	32	35	4	27	1.78
89180--89230	19	2.6	20	90	3	77	43	5	15	35	1.71
93460--93501	19	2.2	19	87	8	59	28	14	0	57	1.38
104701--104805	36	2.9	36	88	4	151	29	34	4	31	1.78
104704--104805	11	8.7	11	68	22	57	30	34	3	31	1.76
110405--110501	36	2.7	36	95	1	169	30	35	5	28	1.79
121807--121910	33	3.1	33	82	9	95	30	36	1	30	1.69
126267--126370	33	3.1	33	82	9	95	30	36	1	30	1.69
131231--131260	13	2.4	13	94	5	53	26	30	0	43	1.55
134010--134058	23	2.1	24	88	3	73	10	16	14	59	1.61
142779--142837	26	2.3	26	96	0	109	49	16	15	18	1.80
147101--147140	19	2.1	19	85	4	53	20	12	0	67	1.22
150511--150596	13	7.2	12	72	22	58	29	3	37	30	1.74
150493--150597	36	2.9	36	95	1	185	28	4	36	30	1.78
154062--154138	31	2.6	30	82	13	88	6	14	3	75	1.15
154396--154435	21	1.9	21	85	10	55	62	0	15	22	1.32
154458--154498	22	1.9	21	90	5	64	26	2	36	34	1.70
164131--164230	35	2.8	36	87	3	141	33	32	4	31	1.76
164131--164213	12	7.1	11	70	25	55	33	31	3	31	1.75
169227--169326	35	2.8	36	92	3	159	33	34	4	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169225--169309	11	7.3	11	71	20	66	32	34	3	29	1.75
173749--173873	62	2.0	62	98	0	241	28	16	21	34	1.94
173885--173949	24	3.0	21	77	16	69	4	15	13	66	1.41
173907--173959	24	2.3	24	83	6	65	7	16	15	60	1.57
176639--176677	19	2.1	19	85	9	53	20	12	0	66	1.24
180618--180655	8	4.6	8	90	6	58	0	10	2	86	0.66
180617--180666	17	2.9	17	87	3	73	2	10	2	86	0.75
183143--183179	2	18.5	2	100	0	74	48	0	0	51	1.00
185050--185122	34	2.1	34	100	0	146	13	17	17	50	1.78
187495--187557	13	5.2	13	72	12	53	30	34	1	33	1.67
187494--187645	35	4.3	35	90	1	223	28	34	3	33	1.74
194168--194214	20	2.3	20	100	0	94	31	19	8	40	1.81

Tables:   1

The End!