genome.fa.s756.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000756.1 Hibiscus syriacus cultivar Beakdansim tig00001459_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47378

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2591--2680	30	3.0	30	81	4	83	24	27	20	27	1.99
3556--3618	27	2.3	27	83	5	74	44	25	11	19	1.83
4684--4789	32	3.3	32	81	5	108	20	24	23	31	1.98
9762--9854	21	4.5	21	78	4	100	40	17	24	17	1.90
9762--9854	41	2.3	41	98	0	177	40	17	24	17	1.90
9840--9890	20	2.5	20	77	3	57	45	19	15	19	1.86
9885--9930	20	2.4	18	80	13	56	28	30	17	23	1.97
10446--10501	19	2.9	19	83	2	76	48	21	17	12	1.80
10507--10672	20	9.1	19	73	16	127	12	22	21	43	1.86
10512--10588	39	2.0	39	84	5	102	10	19	24	45	1.81
10560--10647	33	2.6	33	90	1	122	12	25	23	38	1.90
12706--12772	21	3.2	21	64	6	55	25	35	19	19	1.95
12650--12772	42	2.9	42	81	4	115	23	36	17	22	1.94
15571--15636	20	3.5	19	83	6	89	37	24	22	15	1.92
15569--15687	14	6.9	18	74	17	101	43	24	20	11	1.85
15610--15687	32	2.4	32	97	0	147	46	24	19	10	1.81
15716--15773	14	3.9	14	79	16	71	10	17	24	48	1.78
15699--15789	32	2.8	33	94	3	166	12	18	21	47	1.81
15774--15828	20	2.8	19	83	8	65	16	23	23	36	1.94
16300--16344	18	2.5	18	88	0	72	13	15	44	26	1.83
17665--17702	20	1.9	20	88	0	58	50	21	15	13	1.78
17966--18009	22	2.0	22	90	0	70	20	15	43	20	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18197--18290	20	4.7	20	80	2	89	23	18	24	34	1.96
18177--18291	20	5.7	20	78	5	88	23	17	23	35	1.95
18217--18312	41	2.3	41	82	3	113	20	18	21	38	1.93
18976--19035	30	2.0	30	100	0	120	33	16	6	43	1.74
22780--22812	2	16.5	2	93	0	57	51	0	0	48	1.00
28475--28508	13	2.5	14	85	9	52	41	5	0	52	1.25
30841--31031	68	2.8	66	82	12	228	45	2	4	47	1.37
30839--31014	34	5.2	32	69	19	126	44	2	4	47	1.38
31052--31093	21	2.0	21	100	0	84	38	23	19	19	1.93
32333--32426	43	2.2	43	96	0	170	30	23	27	18	1.97
35825--35893	28	2.5	28	92	2	113	34	8	15	40	1.79
42240--42290	25	2.0	25	96	0	93	29	13	17	39	1.88

Tables:   1

The End!