genome.fa.s7560.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007560.1 Hibiscus syriacus cultivar Beakdansim tig00021374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95717

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6958--7007	18	2.7	20	77	22	56	40	2	2	56	1.22
9118--9166	21	2.5	20	86	6	64	48	18	4	28	1.66
12163--12232	32	2.2	32	89	0	104	22	18	14	44	1.86
12828--12964	45	3.0	46	82	4	181	40	10	10	38	1.74
20508--20532	2	12.5	2	100	0	50	52	0	0	48	1.00
21238--21315	22	3.5	22	89	3	113	14	25	30	29	1.94
25911--25970	26	2.3	26	97	0	111	6	41	5	46	1.52
27403--27448	23	2.0	23	86	0	65	41	13	19	26	1.88
29892--29954	29	2.3	27	83	5	72	28	1	6	63	1.28
37890--37942	21	2.5	21	84	0	70	20	26	18	33	1.96
38297--38347	15	3.4	15	86	0	66	11	66	13	7	1.43
39420--39481	22	3.0	22	70	18	60	25	37	16	20	1.93
39816--39865	20	2.5	20	80	3	66	12	18	24	46	1.82
41734--41857	20	6.5	20	82	10	161	39	21	19	19	1.93
41765--41878	34	3.2	34	81	13	147	40	20	21	17	1.91
41734--41895	74	2.2	73	89	1	243	40	20	20	18	1.92
41904--41970	20	3.3	20	91	0	80	20	17	22	38	1.93
41885--42038	34	4.4	34	74	11	148	15	20	22	42	1.89
42523--42564	21	2.2	19	87	12	59	21	35	19	23	1.96
44118--44211	33	2.8	33	88	3	125	43	20	22	13	1.87
44151--44218	20	3.8	19	74	21	83	47	17	20	14	1.83
44223--44350	20	6.7	20	76	13	117	14	22	23	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44262--44350	40	2.2	40	92	4	144	15	22	25	35	1.94
46775--46828	24	2.2	24	93	0	90	40	20	18	20	1.91
46775--46842	24	2.8	24	84	0	64	38	20	17	23	1.93
47677--47772	20	4.8	20	90	2	81	22	20	19	36	1.95
47687--47772	40	2.2	40	93	4	147	22	19	19	38	1.94
47769--47814	21	2.2	21	84	0	56	39	17	26	17	1.91
49232--49291	32	1.9	31	93	6	104	31	3	18	46	1.65
49915--49945	13	2.3	14	94	5	55	58	0	0	41	0.98
64840--64906	31	2.3	31	82	7	86	32	11	10	44	1.75
64862--64955	49	1.9	49	95	0	170	36	8	15	39	1.79
74234--74266	15	2.3	15	89	5	50	57	0	0	42	0.98
74324--74383	15	4.1	14	78	19	61	68	0	5	26	1.10
75120--75144	11	2.3	11	100	0	50	8	28	32	32	1.86
75730--75798	3	23.0	3	77	5	59	57	1	0	40	1.07
75757--75798	15	2.8	15	89	10	68	57	0	0	42	0.99
75946--76203	76	3.4	76	98	0	489	34	22	20	22	1.97
79083--79308	114	2.0	114	91	0	371	30	20	15	33	1.94
81435--81479	7	6.4	7	82	7	56	0	15	2	82	0.77
81434--81503	8	7.9	8	72	20	50	1	11	4	82	0.86
81432--81491	13	4.8	12	74	20	52	1	13	1	83	0.80
81432--81505	19	3.9	19	76	13	73	1	12	4	82	0.87
81434--81502	27	2.5	26	84	13	86	1	11	4	82	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88794--88865	3	24.0	3	85	5	101	61	0	0	38	0.96

Tables:   1

The End!