genome.fa.s7561.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007561.1 Hibiscus syriacus cultivar Beakdansim tig00021388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42430

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631--717	31	2.7	31	80	7	104	19	37	27	14	1.91
631--874	63	3.8	61	69	22	169	20	34	30	15	1.93
762--893	32	4.2	32	91	3	196	18	37	30	14	1.90
760--893	63	2.1	64	87	4	200	17	36	31	14	1.90
938--1068	60	2.1	62	95	2	239	13	40	35	10	1.80
857--1138	153	1.8	153	86	8	412	15	37	34	12	1.85
999--1377	93	4.1	92	70	21	279	17	35	34	13	1.88
1107--1232	31	4.0	31	84	5	139	19	36	28	15	1.92
1107--1232	62	2.0	63	83	4	157	19	36	28	15	1.92
9482--9567	31	2.7	31	80	3	100	20	37	26	15	1.92
9482--9726	64	3.7	63	67	22	164	20	33	30	15	1.94
9614--9745	32	4.2	32	92	2	196	18	37	30	14	1.90
9793--9925	62	2.1	63	97	1	250	13	39	36	10	1.79
9857--10237	93	4.1	92	71	20	297	17	34	35	13	1.88
9960--10091	32	4.2	32	87	2	169	18	36	29	15	1.92
18362--18450	33	2.8	32	82	1	115	20	37	28	14	1.92
18497--18628	32	4.2	32	91	3	196	18	37	30	14	1.90
18495--18628	63	2.1	64	87	4	200	17	36	31	14	1.90
18675--18808	63	2.1	63	97	1	252	13	39	36	10	1.79
18560--18786	95	2.4	94	71	10	244	15	37	34	12	1.85
18526--18944	158	2.7	158	81	5	526	17	35	34	13	1.89
18843--18975	32	4.2	32	88	1	178	18	36	30	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18436--19093	347	1.9	347	94	1	1176	17	34	34	13	1.89
18738--19124	95	4.1	94	71	11	315	17	34	35	12	1.88
27289--27376	31	2.7	31	82	5	113	19	37	28	14	1.91
27289--27534	64	3.8	61	69	23	180	19	33	30	15	1.93
27423--27553	32	4.2	32	93	1	203	18	37	29	14	1.90
27600--27732	61	2.1	63	95	2	243	13	39	36	10	1.79
27767--27899	32	4.2	32	88	1	178	18	36	30	15	1.92
27663--28047	94	4.1	95	70	12	317	17	34	35	12	1.88
36170--36253	30	2.8	31	78	5	100	21	39	25	14	1.91
36300--36430	32	4.2	32	89	5	187	18	37	29	14	1.90
36298--36430	63	2.1	63	86	5	189	18	36	30	14	1.90
36478--36603	59	2.1	59	95	2	227	14	42	32	11	1.81
36638--36743	32	3.2	33	72	17	92	16	38	29	15	1.89
36707--36890	94	2.0	94	91	2	300	16	35	35	11	1.86

Tables:   1

The End!