Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007562.1 Hibiscus syriacus cultivar Beakdansim tig00021412_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47947

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
525--569
16
2.8
17
93
6
76
40
13
31
15
1.86
1276--1458
5
36.4
5
67
19
71
19
4
2
73
1.14
1271--1421
11
13.5
11
67
21
66
20
3
2
72
1.13
1257--1460
52
3.8
53
71
20
156
18
5
2
72
1.18
1325--1365
21
2.0
21
90
0
64
19
2
0
78
0.87
1324--1375
21
2.4
21
81
12
52
21
1
0
76
0.87
1396--1450
29
1.9
28
88
3
83
18
5
3
72
1.18
1297--1452
68
2.3
67
76
14
158
18
5
3
72
1.18
1408--1497
42
2.1
44
87
8
132
15
6
3
74
1.16
5704--5844
60
2.3
60
78
9
153
38
7
22
31
1.81
9606--9681
37
2.0
38
84
2
100
27
18
21
32
1.96
19119--19184
15
4.4
15
80
14
73
31
54
4
9
1.52
19120--19152
12
2.8
12
100
0
66
33
54
0
12
1.37
19132--19169
18
2.1
18
95
0
67
31
57
2
7
1.41
23474--23512
18
2.1
19
85
4
53
33
0
12
53
1.39
24092--24150
30
2.0
29
83
3
73
35
8
22
33
1.84
24381--24447
23
2.9
23
84
0
89
19
22
23
34
1.97
38200--39059
432
2.0
432
89
0
1326
26
24
17
30
1.97
39038--39405
30
12.3
30
87
1
414
10
31
25
32
1.90
43550--43576
6
4.5
6
100
0
54
29
55
0
14
1.40
45425--45451
6
4.5
6
100
0
54
18
18
62
0
1.32
45513--45548
13
2.8
13
91
4
56
16
55
11
16
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45558--45654
32
3.0
32
75
11
92
52
1
0
46
1.07
46882--46916
16
2.3
15
86
13
54
51
0
2
45
1.16

Tables:   1

The End!