genome.fa.s7563.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007563.1 Hibiscus syriacus cultivar Beakdansim tig00021489_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85924

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5465--5505	21	2.0	21	90	0	64	17	26	36	19	1.94
13864--13912	25	2.0	25	91	0	80	18	20	42	18	1.89
23326--23372	14	3.5	13	80	16	51	78	2	19	0	0.85
24398--25110	136	5.2	136	82	2	813	34	17	20	27	1.95
31809--31843	18	2.0	18	94	5	63	65	5	0	28	1.15
34323--34603	97	2.9	97	92	0	456	41	20	13	23	1.89
36054--36213	24	6.8	24	76	17	149	43	3	8	43	1.53
36190--36240	20	2.6	19	84	9	66	45	1	5	47	1.38
36057--36255	48	4.2	46	78	13	176	43	3	7	45	1.47
36031--36238	22	9.2	21	70	18	98	43	3	9	43	1.53
36058--36249	47	4.1	45	77	14	160	43	3	7	45	1.48
36259--36331	3	25.3	3	76	18	75	30	1	0	68	0.98
37628--37700	15	4.8	15	75	12	69	30	4	1	64	1.20
40602--40670	10	8.1	10	66	33	54	57	23	11	7	1.58
40606--40698	16	5.8	16	97	0	177	55	23	12	7	1.62
40616--40676	6	11.2	6	70	19	53	55	26	13	4	1.57
41783--41837	10	5.7	10	85	8	78	56	23	12	7	1.61
41782--41838	28	2.0	28	96	0	105	54	22	15	7	1.65
41793--41827	18	1.9	18	100	0	70	57	22	14	5	1.59
50945--50975	16	1.9	16	100	0	62	45	6	25	22	1.76
52497--52522	13	2.0	13	100	0	52	38	30	30	0	1.58
52505--52684	43	4.1	43	85	7	261	28	21	40	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52505--52684	91	2.0	91	95	2	326	28	21	40	10	1.85
54210--54258	22	2.2	22	82	7	64	32	12	12	42	1.79
58948--59575	136	4.6	136	89	0	943	34	19	20	25	1.96
58948--59575	271	2.3	272	89	0	952	34	19	20	25	1.96
60778--60874	44	2.2	44	84	0	122	37	18	20	23	1.94
60810--60950	44	3.2	43	84	6	176	29	15	24	30	1.96
67120--67188	32	2.2	32	94	0	120	47	8	26	17	1.76
70191--70487	83	3.6	83	84	1	355	30	22	17	28	1.97
70263--70489	41	5.5	41	71	11	140	29	22	18	29	1.97
75073--75102	16	1.9	15	93	6	51	50	3	0	46	1.18
80030--80106	31	2.5	31	80	2	91	27	31	27	14	1.95

Tables:   1

The End!