Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007566.1 Hibiscus syriacus cultivar Beakdansim tig00021514_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93967

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1251--1406
80
1.9
80
88
3
233
45
11
12
30
1.77
7122--7176
3
18.0
3
78
10
58
32
0
1
65
1.03
7116--7160
21
2.1
22
91
4
74
24
0
2
73
0.95
7111--7161
25
2.0
25
85
7
68
25
0
1
72
0.95
7122--7176
22
2.6
21
82
5
65
32
0
1
65
1.03
7118--7176
28
2.1
28
84
6
75
32
0
1
66
1.02
14468--14521
19
2.9
18
82
15
58
22
3
0
74
0.98
14470--14516
14
3.5
14
77
19
55
23
4
0
72
1.02
16004--16045
7
6.0
7
81
8
50
14
16
14
54
1.71
16004--16045
15
3.0
14
83
10
50
14
16
14
54
1.71
16104--16131
12
2.3
12
100
0
56
25
14
7
53
1.66
18094--18149
11
5.5
11
77
16
57
76
0
23
0
0.78
18091--18139
18
2.7
18
84
9
64
77
0
22
0
0.77
18113--18149
11
3.3
11
92
7
65
81
0
18
0
0.70
23460--23878
113
3.7
112
90
4
601
38
13
20
26
1.90
23821--23918
41
2.4
41
88
6
139
47
8
23
20
1.76
23857--24176
124
2.6
124
90
3
481
39
15
20
25
1.91
24401--24455
3
18.0
3
78
10
58
32
0
1
65
1.03
24394--24439
21
2.1
23
84
12
69
23
0
2
73
0.94
24391--24439
22
2.1
21
85
14
62
24
0
2
73
0.94
24391--24440
25
2.0
24
85
11
66
26
0
2
72
0.96
24401--24455
22
2.6
21
82
5
65
32
0
1
65
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24397--24455
28
2.1
28
84
6
75
32
0
1
66
1.02
25848--26147
150
2.0
150
80
7
333
40
7
7
45
1.60
37799--37850
11
4.7
11
75
17
54
73
0
13
13
1.11
38168--38206
20
2.0
20
85
5
53
33
7
12
46
1.71
38797--39091
105
2.8
105
85
1
401
37
16
20
25
1.93
39031--39092
20
3.3
19
70
21
58
40
12
22
24
1.89
42734--42767
17
2.0
17
88
0
50
50
5
5
38
1.51
43348--43404
30
1.9
30
92
0
96
43
14
3
38
1.62
44017--44095
27
3.0
26
68
14
70
49
6
17
26
1.71
43988--44095
54
2.0
54
90
0
171
49
5
17
27
1.69
51224--51249
2
13.0
2
100
0
52
0
50
0
50
1.00
52942--52968
13
2.1
13
100
0
54
14
0
0
85
0.61
61188--61391
42
4.9
41
76
13
177
47
6
20
25
1.74
61402--61507
43
2.4
43
83
7
126
53
5
14
26
1.62
72307--72367
31
2.0
31
90
0
95
45
13
18
22
1.83
73874--73928
28
2.0
27
92
3
92
38
3
12
45
1.60
73951--73985
18
2.0
17
88
5
52
40
5
17
37
1.73
74806--74833
10
2.8
10
100
0
56
39
0
0
60
0.97
74814--74898
23
3.8
22
73
15
68
45
1
3
49
1.26
74884--74923
19
2.0
19
85
9
53
40
2
0
57
1.12
74909--74996
19
4.5
19
71
24
60
43
2
3
51
1.31
76037--76061
2
12.5
2
100
0
50
52
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
76321--76363
14
3.1
14
83
6
52
44
4
0
51
1.22
76407--76447
2
20.5
2
100
0
82
51
0
0
48
1.00
76611--76640
15
1.9
16
93
6
53
56
0
0
43
0.99
76800--76839
19
2.1
19
90
0
62
42
5
0
52
1.23
77765--77808
21
2.1
21
91
0
70
29
0
15
54
1.42
77785--77847
28
2.2
30
94
5
112
30
0
12
57
1.36
78055--78092
14
2.6
15
87
4
51
36
0
10
52
1.36
78318--78376
17
3.3
17
80
13
73
42
0
8
49
1.33
78429--78477
20
2.7
17
80
17
62
36
2
8
53
1.43
78438--78476
20
2.0
20
94
0
69
38
2
7
51
1.44
82092--82231
55
2.6
54
85
6
185
22
25
21
31
1.98
82243--82930
55
12.3
55
82
9
806
28
25
15
30
1.95
82243--82930
165
4.1
165
86
7
947
28
25
15
30
1.95
82664--82803
67
2.0
71
89
6
216
32
21
19
27
1.97
82609--82858
122
2.0
125
89
3
380
30
23
17
28
1.97
82813--82912
54
2.0
46
83
14
119
28
26
16
30
1.96
82733--82930
109
1.8
108
87
3
299
29
23
16
30
1.96
83946--83974
7
4.3
7
91
8
51
10
13
0
75
1.04
83929--83974
20
2.2
21
85
11
60
10
15
0
73
1.08
83950--83974
13
1.9
13
100
0
50
8
12
0
80
0.92
83928--84007
21
3.8
20
73
20
65
11
11
0
77
0.99
83927--84007
34
2.5
33
80
11
87
11
11
0
77
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83957--83988
16
2.0
16
93
0
55
6
9
0
84
0.78
83937--84007
11
6.4
11
75
18
67
11
9
0
78
0.95
83952--84004
16
3.2
16
76
15
54
11
9
0
79
0.94

Tables:   1

The End!