genome.fa.s7567.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007567.1 Hibiscus syriacus cultivar Beakdansim tig00021529_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60351

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2029--2156	56	2.5	52	82	14	158	51	0	1	46	1.16
1770--2426	358	1.9	349	82	9	821	43	8	9	37	1.68
2402--2454	20	2.7	20	84	0	70	47	0	3	49	1.19
8336--8390	26	2.1	26	86	0	74	49	20	3	27	1.65
8425--8475	26	2.0	26	96	0	93	50	15	5	27	1.67
29317--29365	21	2.3	20	80	10	53	2	16	6	75	1.09
29398--29433	18	2.0	18	100	0	54	33	11	27	27	1.91
32885--32931	21	2.2	21	96	0	85	42	10	19	27	1.84
33514--33575	31	2.0	30	93	3	106	22	20	16	40	1.91
35664--35724	31	2.0	31	90	0	95	24	18	13	44	1.85
36027--36084	29	2.0	29	93	6	100	17	29	12	41	1.85
37901--37937	2	18.5	2	100	0	74	48	0	0	51	1.00
38478--38537	31	2.0	31	83	3	77	25	28	15	31	1.95
38537--38613	30	2.5	30	93	2	127	33	14	28	23	1.94
41217--41270	27	2.0	27	100	0	108	51	7	7	33	1.58
41507--41544	20	1.9	20	100	0	76	55	2	10	31	1.48
46713--46869	20	7.8	20	82	4	137	43	20	18	17	1.88
47379--47425	20	2.3	20	88	0	67	48	19	17	14	1.81
47388--47440	20	2.5	21	87	9	72	50	13	20	15	1.76
48987--49041	21	2.6	21	97	0	101	34	41	12	10	1.78
49610--49727	21	5.7	21	79	5	123	22	35	18	23	1.96
49610--49723	41	2.8	41	89	4	167	21	36	17	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51071--51173	27	3.5	27	68	23	82	29	1	17	51	1.56
51071--51110	13	3.0	13	78	7	53	27	0	15	57	1.38
51137--51181	14	3.5	13	79	8	56	28	0	15	55	1.41
51215--51263	20	2.5	20	96	0	89	48	22	18	10	1.77
51478--51545	20	3.5	20	79	4	75	50	20	17	11	1.77
51562--51637	20	3.8	20	79	10	93	15	15	26	42	1.87
55127--55178	18	2.7	20	75	22	65	34	7	23	34	1.83
55151--55228	40	2.0	40	84	5	104	37	8	20	33	1.84
55270--55401	20	6.6	20	74	15	105	21	17	18	42	1.89

Tables:   1

The End!