Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007568.1 Hibiscus syriacus cultivar Beakdansim tig00021537_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110398

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
273--435
86
1.9
86
87
5
240
42
11
11
34
1.77
1781--1811
16
1.9
16
100
0
62
19
9
19
51
1.74
3730--3756
2
13.5
2
100
0
54
48
0
0
51
1.00
19740--19768
2
15.0
2
92
7
51
51
0
0
48
1.00
19768--19794
2
13.5
2
100
0
54
51
0
48
0
1.00
28364--28410
22
2.1
23
92
4
78
40
25
10
23
1.87
30771--30803
15
2.2
15
100
0
66
63
6
30
0
1.18
30771--30808
15
2.6
14
92
8
51
65
5
28
0
1.14
33234--33279
18
2.6
18
85
0
65
28
0
0
71
0.86
35972--36004
11
3.0
11
95
0
57
51
0
21
27
1.48
36310--36354
21
2.1
21
87
0
63
31
28
24
15
1.96
37813--37861
25
1.9
26
95
4
91
20
22
24
32
1.98
37968--38013
23
2.0
23
86
0
65
19
23
26
30
1.98
41299--41343
21
2.1
21
87
0
63
31
28
24
15
1.96
42959--43003
23
2.0
23
81
0
54
22
26
24
26
2.00
45380--45420
21
1.9
22
90
5
66
48
0
0
51
1.00
45471--45516
14
3.4
13
84
6
56
34
4
0
60
1.16
45455--45498
20
2.2
20
91
0
70
29
0
4
65
1.12
48640--48704
30
2.2
30
97
0
121
13
12
26
47
1.78
52902--52943
2
21.0
2
100
0
84
50
0
0
50
1.00
53726--53771
2
23.0
2
100
0
92
50
0
0
50
1.00
53836--53868
2
16.5
2
87
12
50
51
45
0
3
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53868--53909
2
21.0
2
100
0
84
50
0
0
50
1.00
53639--53917
140
2.0
138
97
1
531
45
20
2
31
1.66
54050--54130
23
3.6
23
83
3
85
35
28
16
19
1.93
55940--56487
187
2.9
184
83
2
603
37
12
18
31
1.88
56823--57122
135
2.2
135
84
4
375
35
14
11
38
1.83
57123--57165
22
1.9
23
95
4
79
39
16
9
34
1.80
57501--57638
65
2.1
64
84
6
181
28
23
19
28
1.98
66040--66195
65
2.4
64
88
3
215
27
22
19
30
1.98
72496--72526
16
1.9
16
93
0
53
12
0
3
83
0.75
76874--76931
28
2.1
28
90
0
89
39
10
10
39
1.74
77014--77074
31
2.0
31
83
0
77
42
14
9
32
1.79
77129--77182
27
2.0
27
100
0
108
40
7
11
40
1.69
77754--77808
12
4.6
12
83
0
74
12
16
47
23
1.81
77913--77961
13
3.8
13
89
2
73
12
14
55
18
1.69
82728--82809
15
5.5
15
82
2
103
40
7
17
35
1.77
82723--82809
45
2.0
44
88
2
129
42
6
17
33
1.76
82728--82809
30
2.8
30
90
1
121
40
7
17
35
1.77
82792--82861
20
3.5
20
96
0
131
40
10
14
35
1.79
83029--83093
28
2.3
27
82
15
78
50
1
1
46
1.20
83029--83126
31
3.2
32
76
15
84
51
2
1
45
1.19
83117--83214
31
3.1
33
76
20
91
47
0
1
51
1.07
83117--83206
22
4.2
21
74
16
62
47
0
1
51
1.08
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
83086--83206
52
2.3
51
76
19
124
49
0
0
48
1.12
83395--83514
42
2.9
42
96
0
213
44
19
19
17
1.87
85140--85294
64
2.4
64
74
9
145
34
21
18
25
1.96
85998--86223
103
2.2
103
91
1
364
26
12
22
37
1.91
86232--86297
23
2.9
23
90
0
96
22
25
25
25
2.00
88816--88870
21
2.6
22
88
5
71
34
36
10
18
1.86
99459--99519
23
2.7
23
92
0
104
27
24
27
19
1.99
102144--102170
2
13.5
2
100
0
54
48
0
0
51
1.00
102714--102765
23
2.3
22
71
12
52
50
1
0
48
1.12
106302--106390
45
1.9
47
88
4
137
29
11
21
38
1.88

Tables:   1

The End!