genome.fa.s7569.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007569.1 Hibiscus syriacus cultivar Beakdansim tig00021541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103840

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141--358	110	2.0	111	87	0	321	29	14	10	45	1.78
12544--12732	70	2.7	70	95	0	333	25	17	23	33	1.96
13411--13480	30	2.4	28	79	13	72	47	8	14	30	1.74
16760--16789	2	15.0	2	100	0	60	50	0	0	50	1.00
17504--17617	20	5.7	20	83	6	113	31	25	18	24	1.97
17502--17617	61	1.9	61	85	0	160	32	25	18	24	1.97
18135--18201	19	3.5	19	81	2	80	50	22	16	10	1.75
18197--18266	19	3.7	19	94	0	122	11	20	21	47	1.81
18311--18367	20	2.8	20	79	10	62	15	22	19	42	1.89
18439--18493	25	2.2	26	81	15	71	18	7	23	50	1.71
20555--20597	21	2.0	21	81	0	50	30	30	25	13	1.94
21114--21429	150	2.1	150	94	0	544	26	16	21	34	1.95
27477--27519	21	2.0	21	86	0	59	30	27	25	16	1.97
28057--28372	150	2.1	150	93	1	537	26	16	21	34	1.95
28341--28384	23	1.9	23	90	0	70	22	27	25	25	2.00
29508--29601	42	2.2	42	79	7	102	25	32	20	21	1.97
30959--30994	14	2.6	14	95	0	63	30	0	25	44	1.54
31104--31181	34	2.3	35	91	6	126	48	19	23	8	1.76
31187--31317	19	7.7	19	64	23	76	15	22	18	44	1.86
31191--31317	33	3.8	33	87	4	184	15	22	18	44	1.87
31190--31318	66	2.0	66	93	0	222	16	21	18	43	1.88
33795--33848	24	2.2	24	86	0	72	40	18	16	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34903--34970	20	3.4	20	100	0	136	33	26	23	16	1.95
35098--35134	14	2.6	14	86	0	56	48	21	0	29	1.50
36553--36633	41	2.0	41	85	2	108	22	12	41	23	1.87
37002--37069	20	3.5	19	82	6	82	38	23	22	16	1.93
37058--37115	14	3.9	14	75	16	62	48	24	17	10	1.78
37042--37120	32	2.4	33	93	2	133	46	22	18	11	1.81
37143--37206	14	4.4	14	80	16	76	10	15	23	50	1.76
37132--37222	32	2.8	33	93	3	157	12	17	21	48	1.80
37207--37261	20	2.8	19	83	8	65	16	23	23	36	1.94
37743--37787	18	2.5	18	88	0	72	13	15	44	26	1.83
39107--39144	20	1.9	20	88	0	58	50	21	15	13	1.78
39407--39453	22	2.1	22	96	0	85	25	14	40	19	1.90
39620--39713	20	4.7	20	80	7	91	23	18	25	32	1.97
39600--39714	20	5.7	19	78	9	86	23	17	24	34	1.96
39703--39795	20	4.5	21	78	4	100	17	24	18	39	1.91
39642--39776	41	3.3	41	82	4	139	19	21	21	37	1.94
39703--39795	41	2.3	41	100	0	186	17	24	18	39	1.91
50843--50894	2	28.5	2	74	18	51	48	3	0	48	1.20
52096--52129	16	2.1	16	88	5	50	17	5	11	64	1.45
53441--53485	19	2.4	19	92	3	74	13	8	8	68	1.38
56865--57285	84	5.1	84	82	4	496	28	25	21	24	1.99
58359--58410	2	28.5	2	74	18	51	48	3	0	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59914--59943	15	1.9	16	93	6	53	56	16	13	13	1.67
65512--65676	44	3.8	44	91	0	258	26	22	10	40	1.86
79032--79062	2	15.5	2	100	0	62	48	0	0	51	1.00
85519--85567	2	25.0	2	95	4	91	48	0	0	51	1.00
89456--89491	2	18.0	2	100	0	72	0	50	0	50	1.00
89962--90013	25	2.1	25	85	0	68	46	3	11	38	1.59
94759--94819	30	2.0	30	100	0	122	37	26	6	29	1.81
95246--95272	2	13.5	2	100	0	54	51	0	0	48	1.00
95383--95539	21	7.8	20	71	6	84	38	25	17	18	1.92
95506--95697	20	9.6	20	82	5	219	35	25	19	19	1.95
96080--96150	33	2.2	33	92	0	115	11	22	18	47	1.80
96229--96306	41	1.9	41	97	0	147	44	16	25	12	1.83
96230--96305	21	3.7	21	83	3	109	46	17	25	11	1.82
96290--96346	14	3.7	14	70	20	51	45	22	22	8	1.80
96282--96362	33	2.5	33	91	0	135	48	22	20	8	1.77
96358--96477	19	7.1	18	68	24	84	12	22	20	45	1.84
96380--96469	14	5.7	14	70	23	63	12	22	22	43	1.86
96363--96477	33	3.5	33	95	0	203	12	21	20	46	1.83
98171--98820	185	3.5	186	98	1	1249	21	12	19	45	1.84
98171--98820	92	7.1	93	98	1	1249	21	12	19	45	1.84
98868--98933	19	3.4	20	87	6	91	45	27	16	10	1.80
98868--98996	19	7.3	19	72	17	89	45	25	17	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98904--98996	33	2.8	32	87	4	132	46	23	19	10	1.81
98992--99126	19	7.6	19	73	16	119	11	18	23	46	1.81
99014--99070	14	3.7	14	75	20	51	10	19	22	47	1.80
98997--99089	33	2.8	33	93	0	159	10	19	21	48	1.79
101040--101075	14	2.6	14	90	0	54	30	0	22	47	1.52
101182--101278	19	5.4	18	83	14	121	45	17	21	15	1.85
101182--101296	53	2.2	53	95	3	207	43	18	23	14	1.87
101303--101384	33	2.6	32	94	5	148	13	23	18	45	1.84
101318--101414	18	5.9	16	76	18	60	12	23	18	45	1.83
101323--101438	51	2.2	52	96	3	216	13	23	17	45	1.84
101303--101466	84	2.0	82	91	7	269	14	21	18	45	1.85
101375--101480	33	3.2	33	85	11	164	13	21	19	45	1.84
103732--103756	12	2.1	12	100	0	50	0	28	0	72	0.86

Tables:   1

The End!