Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000757.1 Hibiscus syriacus cultivar Beakdansim tig00001464_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111592

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4960--4997
13
2.8
13
88
4
58
73
2
0
23
0.95
6538--6666
5
25.8
5
100
0
258
19
20
0
60
1.36
15283--15326
2
22.5
2
88
4
63
50
0
0
50
1.00
16708--16783
9
8.7
9
77
12
61
57
1
0
40
1.07
16721--16773
3
17.3
3
84
3
70
60
1
0
37
1.08
16739--16797
15
4.1
15
78
12
61
61
1
0
37
1.07
16959--18266
76
17.3
76
93
2
2190
35
21
19
24
1.96
18894--18970
22
3.5
22
94
0
136
38
15
11
33
1.84
23676--23712
19
2.1
18
90
10
58
0
21
0
78
0.75
23947--23976
2
15.0
2
100
0
60
50
0
0
50
1.00
25594--25650
28
2.0
28
89
0
87
61
7
12
19
1.53
25624--25651
12
2.3
12
100
0
56
53
7
14
25
1.66
27242--27299
28
2.1
28
84
6
75
60
1
5
32
1.29
28819--28858
3
13.3
3
84
10
55
60
0
0
40
0.97
32945--32988
18
2.5
18
85
10
56
15
6
2
75
1.12
33287--33328
21
2.0
21
90
9
68
16
19
2
61
1.44
33288--33336
21
2.3
21
86
6
64
16
20
2
61
1.44
42109--42281
90
1.9
89
94
1
301
38
10
6
44
1.65
49036--49142
24
4.5
24
74
0
97
47
16
14
21
1.82
49036--49144
48
2.3
48
77
0
119
47
16
14
21
1.82
51615--51714
30
3.4
30
87
4
123
49
25
6
20
1.71
51615--51728
29
3.9
29
85
5
104
45
22
7
24
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53094--53266
90
1.9
89
92
1
292
39
11
5
43
1.65
56308--56377
18
3.9
18
94
0
113
20
22
30
27
1.98
59216--59274
30
2.0
30
90
3
93
32
5
16
45
1.70
59354--59431
21
3.7
21
79
6
86
24
33
19
23
1.97
59397--59507
20
5.8
19
72
15
70
26
27
21
24
1.99
59452--59507
21
2.8
20
88
2
76
19
26
25
28
1.99
59452--59534
41
2.0
41
86
9
116
19
25
26
28
1.98
59452--59525
20
3.7
20
82
7
87
18
25
24
31
1.98
62783--62842
30
2.0
30
93
6
104
33
6
16
43
1.74
62922--62979
21
2.8
21
86
0
80
22
36
17
24
1.95
63048--63114
20
3.3
20
77
8
73
19
26
23
29
1.98
69998--70028
15
2.1
15
93
0
53
58
6
3
32
1.40
70551--70615
24
2.7
24
85
4
78
27
23
21
27
1.99
75926--76037
50
2.2
50
96
0
206
31
3
32
33
1.75
83665--83689
10
2.5
10
100
0
50
52
20
8
20
1.71
84514--84541
2
14.0
2
100
0
56
50
0
0
50
1.00
84886--85671
259
3.1
256
83
3
945
33
16
15
33
1.91
87819--87852
15
2.2
16
94
5
61
0
23
0
76
0.79
88555--88617
33
1.9
33
90
0
99
30
11
30
28
1.91
92833--92864
4
8.0
4
92
0
55
71
3
0
25
1.00
94224--94248
2
12.5
2
100
0
50
52
0
0
48
1.00
95253--95278
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
97842--97887
19
2.4
19
85
0
65
39
10
19
30
1.86
97929--97968
21
1.9
21
94
0
71
22
22
25
30
1.99
98782--98842
22
2.8
22
84
0
77
24
24
18
32
1.97
100533--100638
55
1.9
56
82
5
135
32
4
16
46
1.68
100589--100683
30
3.2
30
77
4
77
30
5
21
43
1.74
101396--101456
24
2.5
24
81
0
77
29
14
16
39
1.88
107214--107261
22
2.2
21
89
7
78
20
47
20
10
1.79
107263--107373
28
3.8
29
75
10
93
33
3
23
39
1.72
107388--107460
29
2.6
28
80
4
83
35
2
20
41
1.67
107340--107470
28
4.6
29
74
8
106
35
2
22
40
1.66
108168--108226
23
2.5
24
78
8
68
28
13
16
40
1.87

Tables:   1

The End!