Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007571.1 Hibiscus syriacus cultivar Beakdansim tig00021568_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56413

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3401--3429
13
2.2
13
100
0
58
55
0
6
37
1.27
4589--4662
23
3.2
23
63
24
55
36
13
12
37
1.82
11468--11549
5
16.4
5
97
0
146
20
17
0
62
1.33
22561--22629
30
2.2
30
85
15
95
34
5
17
42
1.73
22570--22629
30
2.0
30
93
6
104
33
6
16
43
1.74
22709--22764
21
2.7
21
97
0
103
21
33
19
25
1.97
22829--22924
20
4.7
20
89
3
147
19
33
18
28
1.96
22829--22924
41
2.3
41
96
0
174
19
33
18
28
1.96
23667--23731
24
2.9
23
84
8
82
24
24
18
32
1.97
27352--27412
23
2.7
23
86
0
95
18
26
26
29
1.98
27556--27610
28
2.0
28
82
7
67
36
1
20
41
1.63
30140--30211
20
3.3
22
74
16
62
30
23
20
25
1.99
31216--31272
15
3.7
15
81
9
78
21
35
28
15
1.94
31216--31284
15
4.3
16
78
10
61
21
33
27
17
1.96
31216--31284
32
2.2
32
94
0
120
21
33
27
17
1.96
31310--31364
15
3.4
16
85
7
76
25
30
30
12
1.93
31674--31871
75
2.6
76
85
4
256
22
32
23
21
1.98
34992--35044
26
2.0
26
100
0
106
49
18
16
15
1.80
36049--36077
14
2.1
14
100
0
58
37
0
6
55
1.27
36078--36102
6
4.2
6
100
0
50
52
0
0
48
1.00
38818--38842
13
1.9
13
100
0
50
48
4
0
48
1.20
38778--38850
32
2.4
31
82
15
89
47
2
2
46
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39122--39165
19
2.2
20
84
4
54
56
0
0
43
0.99
39145--39208
26
2.5
26
73
19
62
51
1
1
45
1.20
39081--39194
60
2.0
57
84
10
151
54
0
1
42
1.16
38763--39466
372
1.9
368
84
6
931
45
8
9
37
1.67
39466--39519
21
2.7
20
82
2
63
48
0
3
48
1.19
40012--40038
13
2.1
13
100
0
54
22
29
14
33
1.94
45427--45481
26
2.1
26
86
0
74
49
20
3
27
1.65
45516--45566
26
2.0
26
96
0
93
50
15
5
27
1.67
46132--46213
23
3.6
22
72
18
62
47
0
1
51
1.08
46156--46197
21
2.0
20
86
4
57
42
0
2
54
1.13
46564--46603
16
2.4
17
87
8
55
50
0
0
50
1.00

Tables:   1

The End!