genome.fa.s7572.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007572.1 Hibiscus syriacus cultivar Beakdansim tig00021572_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133194

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1660--1709	23	2.2	23	82	7	57	38	2	2	58	1.21
1893--1932	22	1.9	22	90	10	66	52	5	2	40	1.37
4765--4842	41	1.9	41	84	5	104	52	2	3	41	1.33
8376--8419	2	22.0	2	100	0	88	50	0	0	50	1.00
9812--9844	2	16.5	2	100	0	66	48	0	0	51	1.00
15258--15292	13	2.7	13	86	13	54	45	8	8	37	1.65
20657--20696	2	20.0	2	100	0	80	50	0	0	50	1.00
22165--22209	22	2.1	22	84	8	58	46	2	4	46	1.35
22419--22476	18	3.2	18	75	20	57	48	3	1	46	1.29
24248--24280	2	17.0	2	93	6	59	48	0	0	51	1.00
25279--25370	24	3.8	24	80	0	112	51	16	13	19	1.77
25279--25384	12	8.8	12	70	6	63	52	16	13	17	1.74
29970--30016	24	2.0	24	86	0	67	63	12	2	21	1.39
35623--35681	17	3.2	17	71	19	55	44	1	0	54	1.10
35611--35687	39	2.0	39	87	5	111	42	1	1	54	1.16
45358--45573	43	5.0	43	93	1	371	17	26	23	31	1.97
45358--45573	85	2.5	86	94	0	380	17	26	23	31	1.97
45358--45606	86	2.9	86	90	2	376	19	25	22	32	1.97
45364--45606	43	5.7	43	88	3	296	19	25	22	32	1.97
49834--49878	2	22.5	2	100	0	90	48	0	0	51	1.00
51572--51724	65	2.4	64	85	3	191	29	19	22	28	1.98
52166--53243	538	2.0	538	97	0	2048	43	17	14	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54928--54995	23	3.0	22	69	16	59	26	17	25	30	1.97
59309--59339	2	15.5	2	100	0	62	48	0	0	51	1.00
60408--60489	24	3.4	24	79	3	94	48	19	13	18	1.80
65121--65229	24	4.5	24	81	0	101	55	14	10	19	1.67
69169--69244	31	2.5	31	81	8	86	52	2	5	39	1.38
69267--69296	11	2.7	11	94	0	51	53	0	0	46	1.00
69649--69680	2	16.0	2	93	0	55	46	0	0	53	1.00
74272--74563	43	6.8	43	90	1	406	17	22	25	34	1.96
78836--78903	23	3.2	23	60	20	56	32	25	23	19	1.97
78787--78951	42	4.0	42	95	1	296	32	24	24	18	1.97
78787--78951	83	2.0	83	96	0	303	32	24	24	18	1.97
79785--79973	29	6.6	29	80	3	166	48	16	3	31	1.64
79852--79907	28	2.0	28	86	10	78	51	7	3	37	1.47
80118--80887	385	2.0	385	99	0	1531	29	20	22	26	1.99
85367--85524	83	1.9	83	94	0	280	32	24	22	20	1.97
85367--85524	42	3.8	42	94	1	273	32	24	22	20	1.97
86328--86514	29	6.6	29	78	6	175	49	16	1	33	1.53
86523--86560	13	2.9	13	92	0	58	18	21	42	18	1.90
86524--86565	13	3.2	13	89	0	57	19	21	38	21	1.94
89421--89465	16	2.7	17	77	19	58	42	0	2	55	1.12
92172--92222	8	6.2	8	73	13	50	50	3	1	43	1.31
92635--92680	2	23.0	2	100	0	92	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96293--96330	20	1.9	20	94	0	67	18	15	34	31	1.92
104646--104680	10	3.5	10	92	0	61	2	8	17	71	1.23
104946--104994	19	2.6	19	100	0	98	18	22	24	34	1.96
104962--105124	65	2.5	64	79	5	168	26	17	22	33	1.96
107133--107209	37	2.1	37	80	9	86	51	2	3	41	1.34
108971--109786	406	2.0	406	91	0	1312	34	13	15	37	1.86
112335--112679	166	2.1	165	93	2	595	38	11	9	39	1.75
113019--113050	2	16.0	2	100	0	64	50	0	0	50	1.00
114092--114150	6	8.9	7	85	10	56	49	0	0	50	1.00
114097--114142	2	23.5	2	95	4	85	50	0	0	50	1.00
115971--116052	24	3.4	24	79	3	85	53	18	13	14	1.72
115990--116066	12	6.4	12	79	10	77	50	18	16	14	1.78
115990--116066	36	2.1	36	83	4	93	50	18	16	14	1.78
120282--120318	18	2.0	18	89	5	56	48	0	2	48	1.15
123267--123385	40	2.9	39	75	13	98	47	2	2	47	1.29
126388--126414	3	9.0	3	100	0	54	66	0	0	33	0.92
126689--126721	12	2.8	12	90	4	50	54	0	3	42	1.15

Tables:   1

The End!