Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007573.1 Hibiscus syriacus cultivar Beakdansim tig00021583_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76379
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Found at i:42 original size:7 final size:7
Alignment explanation
Indices: 26--6030 Score: 11249
Period size: 7 Copynumber: 867.4 Consensus size: 7
16 AACCTAAACC
26 CCCT-AA
1 CCCTAAA
32 CCCTAAA
1 CCCTAAA
39 CCCTAAA
1 CCCTAAA
46 -CCT-AA
1 CCCTAAA
51 CCCTAAA
1 CCCTAAA
58 CCCTAAA
1 CCCTAAA
65 CCCTAAA
1 CCCTAAA
72 -CC--AA
1 CCCTAAA
76 CCCTAAA
1 CCCTAAA
83 -CCTAAA
1 CCCTAAA
89 CCCTAAA
1 CCCTAAA
96 CCCTAAA
1 CCCTAAA
103 CCCTAAA
1 CCCTAAA
110 CCCTAAAAA
1 CCCT--AAA
119 CCC-AAA
1 CCCTAAA
125 CCC-AAA
1 CCCTAAA
131 -CCTAAA
1 CCCTAAA
137 CCCTAAAAA
1 CCCT--AAA
146 CCC-AAA
1 CCCTAAA
152 CCCT-AA
1 CCCTAAA
158 CCCTAAA
1 CCCTAAA
165 CCC-AAA
1 CCCTAAA
171 CCCTAAA
1 CCCTAAA
178 -CCTAAA
1 CCCTAAA
184 CCCTAAA
1 CCCTAAA
191 CCCTAAA
1 CCCTAAA
198 CCCTAAA
1 CCCTAAA
*
205 -CCGAAA
1 CCCTAAA
211 CCCTAAA
1 CCCTAAA
218 CCCTAAA
1 CCCTAAA
225 CCCT-AA
1 CCCTAAA
231 -CC-AAA
1 CCCTAAA
236 CCCT-AA
1 CCCTAAA
242 CCCTAAA
1 CCCTAAA
249 CCCT-AA
1 CCCTAAA
255 CCCTAAAAA
1 CCCT--AAA
264 CCCTAAA
1 CCCTAAA
271 CCCTAAA
1 CCCTAAA
*
278 CCCAAAA
1 CCCTAAA
285 CCCT-AA
1 CCCTAAA
291 CCCTAAA
1 CCCTAAA
298 CCCTAAA
1 CCCTAAA
305 CCCTAAA
1 CCCTAAA
312 CCCTAAA
1 CCCTAAA
319 -CCTAAA
1 CCCTAAA
325 CCCTAAA
1 CCCTAAA
332 CCCTAAA
1 CCCTAAA
339 CCCTAAA
1 CCCTAAA
*
346 CCCGAAA
1 CCCTAAA
353 CCCTAAA
1 CCCTAAA
360 CCCTAAA
1 CCCTAAA
367 CCCTAAA
1 CCCTAAA
374 CCCTAAA
1 CCCTAAA
381 -CCTAAA
1 CCCTAAA
387 CCCTAAA
1 CCCTAAA
*
394 CCCGAAA
1 CCCTAAA
401 CCCTAAA
1 CCCTAAA
408 CCCTAACCA
1 CCCTAA--A
417 CCCTAAA
1 CCCTAAA
424 --C-AAA
1 CCCTAAA
428 CCCTAAA
1 CCCTAAA
435 CCCTAAA
1 CCCTAAA
442 CCCTAAA
1 CCCTAAA
449 CCCTAAA
1 CCCTAAA
456 CCCTAAA
1 CCCTAAA
463 CCCTAAA
1 CCCTAAA
470 -CCTAAA
1 CCCTAAA
476 CCCTAAA
1 CCCTAAA
483 CCCTAAA
1 CCCTAAA
490 CCCTAAA
1 CCCTAAA
497 CCCTAAA
1 CCCTAAA
504 CCCTAAA
1 CCCTAAA
511 CCCTAAA
1 CCCTAAA
518 CCCTAAA
1 CCCTAAA
525 CCCTAAA
1 CCCTAAA
532 CCCTAAA
1 CCCTAAA
539 CCCTAAA
1 CCCTAAA
546 CCCTAAA
1 CCCTAAA
553 CCCTAAA
1 CCCTAAA
560 CCCTAAA
1 CCCTAAA
567 CCCTAAA
1 CCCTAAA
574 CCCTAAA
1 CCCTAAA
581 CCCTAAA
1 CCCTAAA
588 CCCT-AA
1 CCCTAAA
594 CCCTAAA
1 CCCTAAA
601 CCCTAAA
1 CCCTAAA
608 CCCTAAA
1 CCCTAAA
615 CCCTAAA
1 CCCTAAA
622 CCC-AAA
1 CCCTAAA
628 CCCTAAA
1 CCCTAAA
635 CCCTAAA
1 CCCTAAA
642 CCCTAAA
1 CCCTAAA
649 CCCTAAA
1 CCCTAAA
656 CCCTAAA
1 CCCTAAA
663 CCCTAAA
1 CCCTAAA
670 CCCTAAA
1 CCCTAAA
677 CCCTAAA
1 CCCTAAA
684 CCCTAAA
1 CCCTAAA
691 CCCTAAA
1 CCCTAAA
698 CCCTAAA
1 CCCTAAA
705 CCCTAAA
1 CCCTAAA
712 CCCTAAA
1 CCCTAAA
719 CCCTAAA
1 CCCTAAA
726 CCCTAAA
1 CCCTAAA
733 CCCTAAA
1 CCCTAAA
740 CCCTAAAA
1 CCCT-AAA
748 CCCTAAA
1 CCCTAAA
755 CCCTAAA
1 CCCTAAA
762 CCCTAAA
1 CCCTAAA
769 CCCTAAA
1 CCCTAAA
776 CCCTAAA
1 CCCTAAA
783 CCCTAAA
1 CCCTAAA
790 CCCTAAA
1 CCCTAAA
797 CCCTAAA
1 CCCTAAA
804 CCCTAAA
1 CCCTAAA
811 CCCTAAA
1 CCCTAAA
818 CCCTAAA
1 CCCTAAA
825 CCCTAAA
1 CCCTAAA
832 -CCTAAA
1 CCCTAAA
838 CCCTAAA
1 CCCTAAA
845 CCCTAAA
1 CCCTAAA
852 CCCTAAA
1 CCCTAAA
859 CCCTAAA
1 CCCTAAA
866 CCCTAAA
1 CCCTAAA
873 CCCTAAA
1 CCCTAAA
880 CCCTAAA
1 CCCTAAA
887 CCCTAAA
1 CCCTAAA
894 CCCTAAA
1 CCCTAAA
901 CCCT-AA
1 CCCTAAA
907 -CCTAAA
1 CCCTAAA
913 CCCTAAA
1 CCCTAAA
920 CCCTAAA
1 CCCTAAA
927 CCCTAAA
1 CCCTAAA
934 CCCTAAA
1 CCCTAAA
941 CCCTAAA
1 CCCTAAA
948 CCCTAAA
1 CCCTAAA
955 CCCTAAA
1 CCCTAAA
962 CCCTAAA
1 CCCTAAA
969 CCCTAAA
1 CCCTAAA
976 CCCTAAA
1 CCCTAAA
983 CCCTAAA
1 CCCTAAA
990 CCCTAAA
1 CCCTAAA
997 CCCTAAA
1 CCCTAAA
1004 CCCTAAA
1 CCCTAAA
1011 CCCTAAA
1 CCCTAAA
1018 -CCTAAA
1 CCCTAAA
1024 CCC-AAA
1 CCCTAAA
1030 CCCTAAA
1 CCCTAAA
1037 CCCTAAA
1 CCCTAAA
1044 CCCTAAA
1 CCCTAAA
1051 CCCTAAA
1 CCCTAAA
1058 CCCTAAA
1 CCCTAAA
1065 CCCTAAA
1 CCCTAAA
1072 CCCTAAA
1 CCCTAAA
1079 CCCT-AA
1 CCCTAAA
1085 CCCTAAA
1 CCCTAAA
1092 CCCTAAA
1 CCCTAAA
1099 CCCTAAA
1 CCCTAAA
1106 -CCT-AA
1 CCCTAAA
1111 CCCTAAA
1 CCCTAAA
1118 CCCTAAA
1 CCCTAAA
1125 CCCT-AA
1 CCCTAAA
1131 CCCTAAA
1 CCCTAAA
1138 CCCTAAA
1 CCCTAAA
1145 CCCTAAA
1 CCCTAAA
1152 CCCTAAA
1 CCCTAAA
1159 CCCT-AA
1 CCCTAAA
1165 -CCTAAA
1 CCCTAAA
1171 CCCTAAA
1 CCCTAAA
1178 CCCTAAA
1 CCCTAAA
1185 CCCTAAA
1 CCCTAAA
1192 CCCTAAA
1 CCCTAAA
1199 CCCTAAA
1 CCCTAAA
1206 CCCTAAA
1 CCCTAAA
1213 CCCTAAA
1 CCCTAAA
1220 CCCTAAA
1 CCCTAAA
1227 CCCTAAA
1 CCCTAAA
1234 CCCTAAA
1 CCCTAAA
1241 CCCT-AA
1 CCCTAAA
1247 CCCTAAA
1 CCCTAAA
1254 CCCTAAA
1 CCCTAAA
1261 CCCTAAA
1 CCCTAAA
1268 CCCTAAA
1 CCCTAAA
1275 -CCTAAA
1 CCCTAAA
1281 CCCTAAA
1 CCCTAAA
1288 CCCTAAA
1 CCCTAAA
1295 CCCTAAA
1 CCCTAAA
1302 CCCTAAA
1 CCCTAAA
1309 CCCTAAA
1 CCCTAAA
1316 CCCTAAA
1 CCCTAAA
1323 CCCTAAA
1 CCCTAAA
1330 CCCTAAA
1 CCCTAAA
1337 CCCTAAA
1 CCCTAAA
1344 CCCTAAA
1 CCCTAAA
1351 CCCTAAA
1 CCCTAAA
1358 CCCTAAA
1 CCCTAAA
1365 CCCTAAA
1 CCCTAAA
1372 CCCTAAA
1 CCCTAAA
1379 CCCTAAA
1 CCCTAAA
1386 CCCTAAA
1 CCCTAAA
1393 CCCTAAA
1 CCCTAAA
1400 CCCTAAA
1 CCCTAAA
1407 CCCTAAA
1 CCCTAAA
1414 CCCTAAA
1 CCCTAAA
1421 CCCTAAA
1 CCCTAAA
1428 CCCT-AA
1 CCCTAAA
1434 CCCTAAA
1 CCCTAAA
1441 CCCTAAA
1 CCCTAAA
1448 CCCTAAAAA
1 CCCT--AAA
1457 CCCT-AA
1 CCCTAAA
1463 CCCTAAA
1 CCCTAAA
1470 CCCTAAA
1 CCCTAAA
1477 CCCTAAA
1 CCCTAAA
1484 CCCTAAA
1 CCCTAAA
1491 CCCTAAA
1 CCCTAAA
1498 CCCTAAA
1 CCCTAAA
1505 CCCTAAA
1 CCCTAAA
1512 CCCT-AA
1 CCCTAAA
1518 CCCTAAA
1 CCCTAAA
1525 CCCTAAA
1 CCCTAAA
1532 CCCTAAA
1 CCCTAAA
1539 CCCTAAA
1 CCCTAAA
1546 CCCTAAA
1 CCCTAAA
1553 CCCTAAA
1 CCCTAAA
1560 CCCTAAA
1 CCCTAAA
1567 CCCTAAA
1 CCCTAAA
1574 CCCTAAA
1 CCCTAAA
1581 CCCTAAA
1 CCCTAAA
1588 CCCTAAA
1 CCCTAAA
1595 CCCTAAA
1 CCCTAAA
1602 -CCT-AA
1 CCCTAAA
1607 CCCTAAA
1 CCCTAAA
1614 CCCTAAA
1 CCCTAAA
1621 CCCTAAA
1 CCCTAAA
1628 CCCT-AA
1 CCCTAAA
1634 CCCTAAA
1 CCCTAAA
1641 CCCTAAA
1 CCCTAAA
1648 CCCTAAA
1 CCCTAAA
1655 CCCTAAA
1 CCCTAAA
1662 CCCTAAA
1 CCCTAAA
1669 -CCTAAA
1 CCCTAAA
1675 CCCT-AA
1 CCCTAAA
1681 CCCTAAA
1 CCCTAAA
1688 CCCT-AA
1 CCCTAAA
1694 CCCTAAA
1 CCCTAAA
1701 CCCTAAA
1 CCCTAAA
1708 CCCTAAA
1 CCCTAAA
1715 CCCTAAA
1 CCCTAAA
1722 CCCTAAA
1 CCCTAAA
1729 CCCTAAA
1 CCCTAAA
1736 CCCTAAA
1 CCCTAAA
1743 CCCTAAA
1 CCCTAAA
1750 CCCTAAA
1 CCCTAAA
1757 CCCTAAA
1 CCCTAAA
1764 CCCTAAA
1 CCCTAAA
1771 CCCTAAA
1 CCCTAAA
1778 CCCTAAA
1 CCCTAAA
1785 CCCTAAA
1 CCCTAAA
1792 CCCTAAA
1 CCCTAAA
1799 CCCTAAA
1 CCCTAAA
1806 CCCTAAA
1 CCCTAAA
1813 CCCT-AA
1 CCCTAAA
1819 CCCTAAA
1 CCCTAAA
1826 CCCTAAA
1 CCCTAAA
1833 CCCTAAA
1 CCCTAAA
1840 CCCTAAA
1 CCCTAAA
1847 CCCTAAA
1 CCCTAAA
1854 CCCTAAA
1 CCCTAAA
1861 CCCTAAA
1 CCCTAAA
1868 CCCTAAA
1 CCCTAAA
1875 CCCTAAA
1 CCCTAAA
1882 CCCTAAA
1 CCCTAAA
1889 CCCTAAA
1 CCCTAAA
1896 CCCTAAA
1 CCCTAAA
1903 CCCTAAA
1 CCCTAAA
1910 CCCTAAA
1 CCCTAAA
1917 CCCTAAA
1 CCCTAAA
1924 CCCTAAA
1 CCCTAAA
1931 -CCTAAA
1 CCCTAAA
1937 CCCTAAA
1 CCCTAAA
1944 CCCTAAA
1 CCCTAAA
1951 CCCT-AA
1 CCCTAAA
1957 -CCTAAA
1 CCCTAAA
1963 CCCTAAA
1 CCCTAAA
1970 CCCTAAA
1 CCCTAAA
1977 CCCT-AA
1 CCCTAAA
1983 CCCTAAA
1 CCCTAAA
1990 CCCTAAA
1 CCCTAAA
1997 CCCTAAA
1 CCCTAAA
2004 CCCTAAA
1 CCCTAAA
2011 CCCT-AA
1 CCCTAAA
2017 CCCTAAA
1 CCCTAAA
2024 CCCTAAA
1 CCCTAAA
2031 CCCTAAA
1 CCCTAAA
2038 CCCTAAA
1 CCCTAAA
2045 CCCTAAA
1 CCCTAAA
2052 CCCTAAA
1 CCCTAAA
2059 CCCTAAA
1 CCCTAAA
2066 CCCTAAA
1 CCCTAAA
2073 -CCTAAA
1 CCCTAAA
2079 CCCT-AA
1 CCCTAAA
2085 CCCTAAA
1 CCCTAAA
2092 CCCTAAA
1 CCCTAAA
2099 CCCTAAA
1 CCCTAAA
2106 CCCTAAA
1 CCCTAAA
2113 CCCTAAA
1 CCCTAAA
2120 CCCTAAA
1 CCCTAAA
2127 CCCTAAA
1 CCCTAAA
2134 CCCTAAA
1 CCCTAAA
2141 CCCTAAA
1 CCCTAAA
2148 CCCTAAA
1 CCCTAAA
2155 CCCTAAA
1 CCCTAAA
2162 CCCTAAA
1 CCCTAAA
2169 CCCTAAA
1 CCCTAAA
2176 CCCTAAA
1 CCCTAAA
2183 CCCTAAA
1 CCCTAAA
2190 CCCTAAA
1 CCCTAAA
2197 CCCTAAA
1 CCCTAAA
2204 CCCTAAA
1 CCCTAAA
2211 CCCT-AA
1 CCCTAAA
2217 CCCTAAA
1 CCCTAAA
2224 CCCTAAA
1 CCCTAAA
2231 CCCTAAA
1 CCCTAAA
2238 CCCTAAA
1 CCCTAAA
2245 CCCTAAA
1 CCCTAAA
2252 CCCTAAA
1 CCCTAAA
2259 CCCTAAA
1 CCCTAAA
2266 CCCTAAA
1 CCCTAAA
2273 CCCTAAA
1 CCCTAAA
2280 CCCTAAA
1 CCCTAAA
2287 CCCTAAA
1 CCCTAAA
2294 CCCTAAA
1 CCCTAAA
2301 CCCTAAA
1 CCCTAAA
2308 CCCTAAA
1 CCCTAAA
2315 CCCTAAA
1 CCCTAAA
2322 CCCTAAA
1 CCCTAAA
2329 CCCTAAA
1 CCCTAAA
2336 CCCTAAA
1 CCCTAAA
2343 -CCTAAA
1 CCCTAAA
2349 CCCTAAA
1 CCCTAAA
2356 CCCTAAA
1 CCCTAAA
2363 CCCTAAA
1 CCCTAAA
2370 CCCTAAA
1 CCCTAAA
2377 CCCTAAA
1 CCCTAAA
2384 CCCTAAA
1 CCCTAAA
2391 CCCTAAA
1 CCCTAAA
2398 CCCTAAA
1 CCCTAAA
2405 CCCTAAA
1 CCCTAAA
2412 CCCTAAA
1 CCCTAAA
2419 CCCTAAA
1 CCCTAAA
2426 CCCTAAA
1 CCCTAAA
2433 CCCTAAA
1 CCCTAAA
2440 CCCTAAA
1 CCCTAAA
2447 CCCTAAA
1 CCCTAAA
2454 CCCTAAA
1 CCCTAAA
2461 CCCTAAA
1 CCCTAAA
2468 CCCTAAA
1 CCCTAAA
2475 CCCTAAA
1 CCCTAAA
2482 CCCTAAA
1 CCCTAAA
2489 CCCTAAA
1 CCCTAAA
2496 CCCTAAA
1 CCCTAAA
2503 CCCTAAA
1 CCCTAAA
2510 CCCTAAA
1 CCCTAAA
2517 CCCTAAA
1 CCCTAAA
2524 CCCT-AA
1 CCCTAAA
2530 CCCTAAA
1 CCCTAAA
2537 CCCTAAA
1 CCCTAAA
2544 CCCTAAA
1 CCCTAAA
2551 CCCTAAA
1 CCCTAAA
2558 CCCTAAA
1 CCCTAAA
2565 -CCTAAA
1 CCCTAAA
2571 CCCTAAA
1 CCCTAAA
2578 CCCTAAA
1 CCCTAAA
2585 CCCTAAA
1 CCCTAAA
2592 CCCTAAA
1 CCCTAAA
2599 CCCTAAA
1 CCCTAAA
2606 CCCTAAA
1 CCCTAAA
2613 CCCTAAA
1 CCCTAAA
2620 CCCTAAA
1 CCCTAAA
2627 CCCTAAA
1 CCCTAAA
2634 CCCTAAA
1 CCCTAAA
2641 CCCTAAA
1 CCCTAAA
2648 CCCT-AA
1 CCCTAAA
2654 CCCTAAA
1 CCCTAAA
2661 CCCTAAA
1 CCCTAAA
2668 CCCTAAA
1 CCCTAAA
2675 CCCTAAA
1 CCCTAAA
2682 CCCTAAA
1 CCCTAAA
2689 CCCTAAA
1 CCCTAAA
2696 CCCTAAA
1 CCCTAAA
2703 CCCTAAA
1 CCCTAAA
2710 CCCTAAA
1 CCCTAAA
2717 CCCTAAA
1 CCCTAAA
2724 CCCTAAA
1 CCCTAAA
2731 CCCTAAA
1 CCCTAAA
2738 CCCTAAA
1 CCCTAAA
2745 CCCTAAA
1 CCCTAAA
2752 CCCTAAA
1 CCCTAAA
2759 CCCTAAA
1 CCCTAAA
2766 CCCTAAA
1 CCCTAAA
2773 CCCTAAA
1 CCCTAAA
2780 CCCTAAA
1 CCCTAAA
2787 CCCTAAA
1 CCCTAAA
2794 CCCTAAA
1 CCCTAAA
2801 CCCTAAA
1 CCCTAAA
2808 CCCTAAA
1 CCCTAAA
2815 CCCCCTAAA
1 --CCCTAAA
2824 CCCTAAA
1 CCCTAAA
2831 CCCTAAA
1 CCCTAAA
2838 CCCTAAA
1 CCCTAAA
2845 CCCTAAA
1 CCCTAAA
2852 CCCTAAA
1 CCCTAAA
2859 CCCT-AA
1 CCCTAAA
2865 CCCTAAA
1 CCCTAAA
2872 CCCTAAA
1 CCCTAAA
2879 CCCTAAA
1 CCCTAAA
2886 CCCTAAA
1 CCCTAAA
2893 CCCTAAA
1 CCCTAAA
2900 CCCTAAA
1 CCCTAAA
2907 CCCTAAA
1 CCCTAAA
2914 CCCTAAA
1 CCCTAAA
2921 CCCTAAA
1 CCCTAAA
2928 CCCTAAA
1 CCCTAAA
2935 CCCCCCTAAA
1 ---CCCTAAA
2945 CCCTAAA
1 CCCTAAA
2952 CCCTAAA
1 CCCTAAA
2959 CCCTAAA
1 CCCTAAA
2966 CCCTAAA
1 CCCTAAA
2973 CCCTAAA
1 CCCTAAA
2980 CCCTAAA
1 CCCTAAA
2987 CCCTAAA
1 CCCTAAA
2994 CCCTAAA
1 CCCTAAA
3001 CCCTAAA
1 CCCTAAA
3008 CCCTAAA
1 CCCTAAA
3015 CCCTAAA
1 CCCTAAA
3022 CCCTAAA
1 CCCTAAA
3029 CCCTAAA
1 CCCTAAA
3036 CCCTAAA
1 CCCTAAA
3043 CCCTAAA
1 CCCTAAA
3050 CCCT-AA
1 CCCTAAA
3056 CCCTAAA
1 CCCTAAA
3063 CCCTAAA
1 CCCTAAA
3070 CCCTAAA
1 CCCTAAA
3077 CCCT-AA
1 CCCTAAA
3083 CCCTAAA
1 CCCTAAA
3090 CCCTAAA
1 CCCTAAA
3097 CCCT-AA
1 CCCTAAA
3103 CCCTAAA
1 CCCTAAA
3110 CCCTAAA
1 CCCTAAA
3117 CCCTAAA
1 CCCTAAA
3124 -CCTAAA
1 CCCTAAA
3130 CCCTAAA
1 CCCTAAA
3137 CCCTAAA
1 CCCTAAA
3144 CCCTAAA
1 CCCTAAA
3151 CCCTAAA
1 CCCTAAA
3158 CCCTAAA
1 CCCTAAA
3165 CCCTAAA
1 CCCTAAA
3172 CCCTAAA
1 CCCTAAA
3179 CCCTAAA
1 CCCTAAA
3186 CCCTAAA
1 CCCTAAA
3193 CCCTAAA
1 CCCTAAA
3200 CCCTAAA
1 CCCTAAA
3207 CCCTAAA
1 CCCTAAA
3214 CCCTAAA
1 CCCTAAA
3221 CCCTAAA
1 CCCTAAA
3228 CCCTAAA
1 CCCTAAA
3235 CCCT-AA
1 CCCTAAA
3241 CCCTAAA
1 CCCTAAA
3248 CCCTAAA
1 CCCTAAA
3255 CCCTAAA
1 CCCTAAA
3262 CCCTAAA
1 CCCTAAA
3269 CCCTAAA
1 CCCTAAA
3276 CCCTAAA
1 CCCTAAA
3283 CCCTAAA
1 CCCTAAA
3290 CCCTAAA
1 CCCTAAA
3297 CCCTAAA
1 CCCTAAA
3304 CCCTAAA
1 CCCTAAA
3311 CCCTAAA
1 CCCTAAA
3318 CCCT-AA
1 CCCTAAA
3324 CCCTAAA
1 CCCTAAA
3331 CCCTAAA
1 CCCTAAA
3338 CCCTAAA
1 CCCTAAA
3345 CCCTAAA
1 CCCTAAA
3352 CCCTAAA
1 CCCTAAA
3359 CCCT-AA
1 CCCTAAA
3365 CCCTAAA
1 CCCTAAA
3372 CCCTAAA
1 CCCTAAA
3379 CCCTAAA
1 CCCTAAA
3386 CCCTAAA
1 CCCTAAA
3393 CCCTAAA
1 CCCTAAA
3400 CCCTAAA
1 CCCTAAA
3407 CCCTAAA
1 CCCTAAA
3414 CCCT-AA
1 CCCTAAA
3420 CCCTAAA
1 CCCTAAA
3427 CCCTAAA
1 CCCTAAA
3434 CCCTAAA
1 CCCTAAA
3441 CCCTAAA
1 CCCTAAA
3448 CCCTAAA
1 CCCTAAA
3455 CCCTAAA
1 CCCTAAA
3462 CCCTAAA
1 CCCTAAA
3469 CCCTAAA
1 CCCTAAA
3476 CCCTAAA
1 CCCTAAA
3483 CCCTAAA
1 CCCTAAA
3490 CCCTAAA
1 CCCTAAA
3497 CCCTAAA
1 CCCTAAA
3504 CCCTAAA
1 CCCTAAA
3511 CCCTAAA
1 CCCTAAA
3518 CCCTAAA
1 CCCTAAA
3525 CCCT-AA
1 CCCTAAA
3531 CCCTAAA
1 CCCTAAA
3538 CCCTAAA
1 CCCTAAA
3545 CCCTAAA
1 CCCTAAA
3552 CCCTAAA
1 CCCTAAA
3559 CCCTAAA
1 CCCTAAA
3566 CCCTAAA
1 CCCTAAA
3573 CCCTAAA
1 CCCTAAA
3580 CCCTAAA
1 CCCTAAA
3587 CCCTAAA
1 CCCTAAA
3594 CCCTAAA
1 CCCTAAA
3601 CCCTAAA
1 CCCTAAA
3608 CCCTAAA
1 CCCTAAA
3615 CCCTAAA
1 CCCTAAA
3622 CCCT-AA
1 CCCTAAA
3628 -CCTAAA
1 CCCTAAA
3634 CCCTAAA
1 CCCTAAA
3641 CCCTAAA
1 CCCTAAA
3648 CCCTAAA
1 CCCTAAA
3655 CCCTAAA
1 CCCTAAA
3662 CCCTAAA
1 CCCTAAA
3669 CCCTAAA
1 CCCTAAA
3676 CCCTAAA
1 CCCTAAA
3683 CCCTAAA
1 CCCTAAA
3690 CCCTAAA
1 CCCTAAA
3697 CCCTAAA
1 CCCTAAA
3704 CCCTAAA
1 CCCTAAA
3711 CCCTAAA
1 CCCTAAA
3718 CCCTAAA
1 CCCTAAA
3725 CCCTAAA
1 CCCTAAA
3732 CCCTAAA
1 CCCTAAA
3739 CCCTAAA
1 CCCTAAA
3746 CCCTAAA
1 CCCTAAA
3753 CCCTAAA
1 CCCTAAA
3760 CCCTAAA
1 CCCTAAA
3767 CCCTAAA
1 CCCTAAA
3774 CCCTAAA
1 CCCTAAA
3781 CCCTAAA
1 CCCTAAA
3788 CCCTAAA
1 CCCTAAA
3795 CCCTAAA
1 CCCTAAA
3802 CCCTAAA
1 CCCTAAA
3809 CCCTAAA
1 CCCTAAA
3816 CCCTAAA
1 CCCTAAA
3823 CCCTAAA
1 CCCTAAA
3830 CCCTAAA
1 CCCTAAA
3837 CCCTAAA
1 CCCTAAA
3844 CCCTAAA
1 CCCTAAA
3851 CCCTAAA
1 CCCTAAA
3858 CCCTAAA
1 CCCTAAA
3865 CCCTAAA
1 CCCTAAA
3872 CCCTAAA
1 CCCTAAA
3879 CCCTAAA
1 CCCTAAA
3886 CCCTAAA
1 CCCTAAA
3893 CCCTAAA
1 CCCTAAA
3900 CCCTAAA
1 CCCTAAA
3907 CCCTAAA
1 CCCTAAA
3914 CCCTAAA
1 CCCTAAA
3921 CCCTAAA
1 CCCTAAA
3928 CCCTAAA
1 CCCTAAA
3935 CCCTAAA
1 CCCTAAA
3942 CCCTAAA
1 CCCTAAA
3949 CCCTAAA
1 CCCTAAA
3956 CCCTAAA
1 CCCTAAA
3963 CCCTAAA
1 CCCTAAA
3970 CCCTAAA
1 CCCTAAA
3977 CCCTAAA
1 CCCTAAA
3984 CCCTAAA
1 CCCTAAA
3991 CCCTAAA
1 CCCTAAA
3998 CCCTAAA
1 CCCTAAA
4005 CCCTAAA
1 CCCTAAA
4012 CCCTAAA
1 CCCTAAA
4019 CCCTAAA
1 CCCTAAA
4026 CCCTAAA
1 CCCTAAA
4033 CCCTAAA
1 CCCTAAA
4040 CCCTAAA
1 CCCTAAA
4047 CCCTAAA
1 CCCTAAA
4054 CCCTAAA
1 CCCTAAA
4061 CCCTAAA
1 CCCTAAA
4068 CCCTAAA
1 CCCTAAA
4075 CCCTAAA
1 CCCTAAA
4082 CCCTAAA
1 CCCTAAA
4089 CCCTAAA
1 CCCTAAA
4096 CCCTAAA
1 CCCTAAA
4103 CCCTAAA
1 CCCTAAA
4110 CCCTAAA
1 CCCTAAA
4117 CCCTAAA
1 CCCTAAA
4124 CCCTAAA
1 CCCTAAA
4131 CCCTAAA
1 CCCTAAA
4138 CCCTAAA
1 CCCTAAA
4145 CCCTAAA
1 CCCTAAA
4152 CCCTAAA
1 CCCTAAA
4159 CCCTAAA
1 CCCTAAA
4166 CCCTAAA
1 CCCTAAA
4173 CCCTAAA
1 CCCTAAA
4180 CCCTAAA
1 CCCTAAA
4187 CCCTAAA
1 CCCTAAA
4194 CCCTAAA
1 CCCTAAA
4201 CCCTAAA
1 CCCTAAA
4208 CCCTAAA
1 CCCTAAA
4215 CCCTAAA
1 CCCTAAA
4222 CCCTAAA
1 CCCTAAA
4229 CCCTAAA
1 CCCTAAA
4236 CCCTAAA
1 CCCTAAA
4243 CCCTAAA
1 CCCTAAA
4250 CCCTAAA
1 CCCTAAA
4257 CCCTAAA
1 CCCTAAA
4264 CCCTAAA
1 CCCTAAA
4271 CCCTAAA
1 CCCTAAA
4278 CCCTAAA
1 CCCTAAA
4285 CCCTAAA
1 CCCTAAA
4292 CCCTAAA
1 CCCTAAA
4299 CCCTAAA
1 CCCTAAA
4306 CCCTAAA
1 CCCTAAA
4313 CCCTAAA
1 CCCTAAA
4320 CCCTAAA
1 CCCTAAA
4327 CCCTAAA
1 CCCTAAA
4334 CCCTAAA
1 CCCTAAA
4341 CCCTAAA
1 CCCTAAA
4348 CCCTAAA
1 CCCTAAA
4355 CCCTAAA
1 CCCTAAA
4362 CCCTAAA
1 CCCTAAA
4369 CCCTAAA
1 CCCTAAA
4376 CCCTAAA
1 CCCTAAA
4383 CCCTAAA
1 CCCTAAA
4390 CCCTAAA
1 CCCTAAA
4397 CCCTAAA
1 CCCTAAA
4404 CCCTAAA
1 CCCTAAA
4411 CCCTAAA
1 CCCTAAA
4418 CCCTAAA
1 CCCTAAA
4425 CCCTAAA
1 CCCTAAA
4432 -CCTAAA
1 CCCTAAA
4438 CCCTAAA
1 CCCTAAA
4445 CCCTAAA
1 CCCTAAA
4452 CCCTAAA
1 CCCTAAA
4459 CCCTAAA
1 CCCTAAA
4466 CCCTAAA
1 CCCTAAA
4473 CCCTAAA
1 CCCTAAA
4480 CCCTAAA
1 CCCTAAA
4487 CCCTAAA
1 CCCTAAA
4494 CCCTAAA
1 CCCTAAA
4501 CCCTAAA
1 CCCTAAA
4508 CCCTAAA
1 CCCTAAA
4515 CCCTAAA
1 CCCTAAA
4522 CCCTAAA
1 CCCTAAA
4529 CCCTAAA
1 CCCTAAA
4536 CCCTAAA
1 CCCTAAA
4543 CCCTAAA
1 CCCTAAA
4550 CCCTAAA
1 CCCTAAA
4557 CCCTAAA
1 CCCTAAA
4564 CCCTAAA
1 CCCTAAA
4571 CCCTAAA
1 CCCTAAA
4578 CCCTAAA
1 CCCTAAA
4585 CCCTAAA
1 CCCTAAA
4592 CCCTAAA
1 CCCTAAA
4599 CCCTAAA
1 CCCTAAA
4606 CCCTAAA
1 CCCTAAA
4613 CCCTAAA
1 CCCTAAA
4620 CCCTAAA
1 CCCTAAA
4627 CCCTAAA
1 CCCTAAA
4634 CCCTAAA
1 CCCTAAA
4641 CCCTAAA
1 CCCTAAA
4648 CCCTAAA
1 CCCTAAA
4655 CCCTAAA
1 CCCTAAA
4662 CCCTAAA
1 CCCTAAA
4669 CCCTAAA
1 CCCTAAA
4676 CCCTAAA
1 CCCTAAA
4683 CCCTAAA
1 CCCTAAA
4690 CCCTAAA
1 CCCTAAA
4697 CCCTAAA
1 CCCTAAA
4704 CCCTAAA
1 CCCTAAA
4711 CCCTAAA
1 CCCTAAA
4718 CCCTAAA
1 CCCTAAA
4725 CCCTAAA
1 CCCTAAA
4732 CCCTAAA
1 CCCTAAA
4739 CCCTAAA
1 CCCTAAA
4746 CCCTAAA
1 CCCTAAA
4753 CCCTAAA
1 CCCTAAA
4760 CCCT-AA
1 CCCTAAA
4766 CCCTAAA
1 CCCTAAA
4773 CCCTAAA
1 CCCTAAA
4780 CCCTAAA
1 CCCTAAA
4787 CCCTAAA
1 CCCTAAA
4794 CCCTAAA
1 CCCTAAA
4801 CCCTAAA
1 CCCTAAA
4808 CCCTAAA
1 CCCTAAA
4815 CCCTAAA
1 CCCTAAA
4822 -CCTAAA
1 CCCTAAA
4828 CCCTAAA
1 CCCTAAA
4835 CCCTAAA
1 CCCTAAA
4842 CCCTAAA
1 CCCTAAA
4849 CCCTAAA
1 CCCTAAA
4856 -CCTAAA
1 CCCTAAA
4862 CCCTAAA
1 CCCTAAA
4869 CCCTAAA
1 CCCTAAA
4876 CCCTAAA
1 CCCTAAA
4883 CCCTAAA
1 CCCTAAA
4890 CCCTAAA
1 CCCTAAA
4897 CCCTAAA
1 CCCTAAA
4904 CCCTAAA
1 CCCTAAA
4911 CCCTAAA
1 CCCTAAA
4918 CCCTAAA
1 CCCTAAA
4925 CCCTAAA
1 CCCTAAA
4932 CCCTAAA
1 CCCTAAA
4939 CCCTAAA
1 CCCTAAA
4946 CCCTAAA
1 CCCTAAA
4953 CCCTAAA
1 CCCTAAA
4960 CCCTAAA
1 CCCTAAA
4967 CCCTAAA
1 CCCTAAA
4974 CCCTAAA
1 CCCTAAA
4981 CCCTAAA
1 CCCTAAA
4988 CCCTAAA
1 CCCTAAA
4995 CCCTAAA
1 CCCTAAA
5002 CCCTAAA
1 CCCTAAA
5009 CCCTAAA
1 CCCTAAA
5016 CCCTAAA
1 CCCTAAA
5023 CCCTAAA
1 CCCTAAA
5030 CCCTAAA
1 CCCTAAA
5037 CCCTAAA
1 CCCTAAA
5044 CCCTAAA
1 CCCTAAA
5051 CCCTAAA
1 CCCTAAA
5058 CCCTAAA
1 CCCTAAA
5065 CCCTAAA
1 CCCTAAA
5072 CCCTAAA
1 CCCTAAA
5079 CCCTAAA
1 CCCTAAA
5086 CCCTAAA
1 CCCTAAA
5093 CCCTAAA
1 CCCTAAA
5100 CCCTAAA
1 CCCTAAA
5107 CCCTAAA
1 CCCTAAA
5114 CCCTAAA
1 CCCTAAA
5121 CCCTAAA
1 CCCTAAA
5128 CCCTAAA
1 CCCTAAA
5135 CCCTAAA
1 CCCTAAA
5142 CCCTAAA
1 CCCTAAA
5149 CCCTAAA
1 CCCTAAA
5156 CCCTAAA
1 CCCTAAA
5163 CCCTAAA
1 CCCTAAA
5170 CCCTAAA
1 CCCTAAA
5177 CCCTAAA
1 CCCTAAA
5184 CCCTAAA
1 CCCTAAA
5191 CCCTAAA
1 CCCTAAA
5198 CCCTAAA
1 CCCTAAA
5205 CCCTAAA
1 CCCTAAA
5212 CCCTAAA
1 CCCTAAA
5219 CCCT-AA
1 CCCTAAA
5225 CCCTAAA
1 CCCTAAA
5232 CCCTAAA
1 CCCTAAA
5239 CCCTAAA
1 CCCTAAA
5246 CCCTAAA
1 CCCTAAA
5253 CCCTAAA
1 CCCTAAA
5260 CCCTAAA
1 CCCTAAA
5267 CCCTAAA
1 CCCTAAA
5274 CCCTAAA
1 CCCTAAA
5281 CCCTAAA
1 CCCTAAA
5288 CCCTAAA
1 CCCTAAA
5295 CCCTAAA
1 CCCTAAA
5302 CCCTAAA
1 CCCTAAA
5309 CCCTAAA
1 CCCTAAA
5316 CCCTAAA
1 CCCTAAA
5323 CCCTAAA
1 CCCTAAA
5330 CCCTAAA
1 CCCTAAA
5337 CCCTAAA
1 CCCTAAA
5344 CCCTAAA
1 CCCTAAA
5351 CCCTAAA
1 CCCTAAA
5358 CCCTAAA
1 CCCTAAA
5365 CCCTAAA
1 CCCTAAA
5372 CCCTAAA
1 CCCTAAA
5379 CCCTAAA
1 CCCTAAA
5386 CCCTAAA
1 CCCTAAA
5393 CCCTAAA
1 CCCTAAA
5400 CCCTAAA
1 CCCTAAA
5407 CCCT-AA
1 CCCTAAA
5413 CCCTAAA
1 CCCTAAA
5420 CCCTAAA
1 CCCTAAA
5427 CCCTAAA
1 CCCTAAA
5434 CCCTAAA
1 CCCTAAA
5441 CCCTAAA
1 CCCTAAA
5448 CCCTAAA
1 CCCTAAA
5455 CCCTAAA
1 CCCTAAA
5462 CCCTAAA
1 CCCTAAA
5469 CCCTAAA
1 CCCTAAA
5476 CCCTAAA
1 CCCTAAA
5483 CCCTAAA
1 CCCTAAA
5490 CCCTAAA
1 CCCTAAA
5497 CCCTAAA
1 CCCTAAA
5504 CCCTAAA
1 CCCTAAA
5511 CCCTAAA
1 CCCTAAA
5518 CCCTAAA
1 CCCTAAA
5525 CCCTAAA
1 CCCTAAA
5532 CCCTAAA
1 CCCTAAA
5539 CCCTAAA
1 CCCTAAA
5546 CCCTAAA
1 CCCTAAA
5553 CCCTAAA
1 CCCTAAA
5560 CCCTAAA
1 CCCTAAA
5567 CCCTAAA
1 CCCTAAA
5574 CCCTAAA
1 CCCTAAA
5581 CCCTAAA
1 CCCTAAA
5588 CCCTAAA
1 CCCTAAA
5595 CCCTAAA
1 CCCTAAA
5602 CCCTAAA
1 CCCTAAA
5609 CCCTAAA
1 CCCTAAA
5616 CCCTAAA
1 CCCTAAA
5623 CCCTAAA
1 CCCTAAA
5630 CCCT-AA
1 CCCTAAA
5636 CCCTAAA
1 CCCTAAA
5643 CCCTAAA
1 CCCTAAA
5650 CCCTAAA
1 CCCTAAA
5657 CCCTAAA
1 CCCTAAA
5664 CCCTAAA
1 CCCTAAA
5671 CCCTAAA
1 CCCTAAA
5678 CCCTAAA
1 CCCTAAA
5685 CCCTAAA
1 CCCTAAA
5692 CCCTAAA
1 CCCTAAA
5699 CCCTAAA
1 CCCTAAA
5706 CCCTAAA
1 CCCTAAA
5713 CCCTAAA
1 CCCTAAA
5720 CCCTAAA
1 CCCTAAA
5727 CCCTAAA
1 CCCTAAA
5734 CCCTAAA
1 CCCTAAA
5741 CCCTAAA
1 CCCTAAA
5748 CCCTAAA
1 CCCTAAA
5755 CCCTAAA
1 CCCTAAA
5762 CCCTAAA
1 CCCTAAA
5769 CCCTAAA
1 CCCTAAA
5776 CCCTAAA
1 CCCTAAA
5783 CCCTAAA
1 CCCTAAA
5790 CCCTAAA
1 CCCTAAA
5797 CCCTAAA
1 CCCTAAA
5804 CCCTAAA
1 CCCTAAA
5811 CCCTAAA
1 CCCTAAA
5818 CCCTAAA
1 CCCTAAA
5825 CCCTAAA
1 CCCTAAA
5832 CCCTAAA
1 CCCTAAA
5839 CCCTAAA
1 CCCTAAA
5846 CCCTAAA
1 CCCTAAA
5853 CCCTAAA
1 CCCTAAA
5860 CCCTAAA
1 CCCTAAA
5867 CCCTAAA
1 CCCTAAA
5874 CCCTAAA
1 CCCTAAA
5881 CCCTAAA
1 CCCTAAA
5888 CCCTAAA
1 CCCTAAA
5895 CCCTAAA
1 CCCTAAA
5902 CCCTAAA
1 CCCTAAA
5909 CCCTAAA
1 CCCTAAA
5916 CCCTAAA
1 CCCTAAA
5923 CCCTAAA
1 CCCTAAA
5930 CCCTAAA
1 CCCTAAA
5937 CCCTAAA
1 CCCTAAA
5944 CCCTAAA
1 CCCTAAA
5951 CCCTAAA
1 CCCTAAA
5958 CCCTAAA
1 CCCTAAA
5965 CCCTAAA
1 CCCTAAA
5972 CCCTAAA
1 CCCTAAA
5979 CCCTAAA
1 CCCTAAA
5986 CCCTAAA
1 CCCTAAA
5993 CCCTAAA
1 CCCTAAA
6000 CCCTAAA
1 CCCTAAA
6007 CCCTAAA
1 CCCTAAA
6014 CCCTAAA
1 CCCTAAA
6021 CCCTAAA
1 CCCTAAA
6028 CCC
1 CCC
6031 CAACCCCAGA
Statistics
Matches: 5893, Mismatches: 8, Indels: 195
0.97 0.00 0.03
Matches are distributed among these distances:
4 5 0.00
5 27 0.00
6 392 0.07
7 5416 0.92
8 7 0.00
9 39 0.01
10 7 0.00
ACGTcount: A:0.43, C:0.43, G:0.00, T:0.14
Consensus pattern (7 bp):
CCCTAAA
Found at i:6043 original size:7 final size:7
Alignment explanation
Indices: 6027--6627 Score: 1167
Period size: 7 Copynumber: 86.6 Consensus size: 7
6017 TAAACCCTAA
6027 ACCCCA-
1 ACCCCAG
6033 ACCCCAG
1 ACCCCAG
6040 ACCCCAG
1 ACCCCAG
6047 ACCCCAG
1 ACCCCAG
6054 ACCCCAG
1 ACCCCAG
6061 ACCCCAG
1 ACCCCAG
6068 ACCCCAG
1 ACCCCAG
6075 A-CCCAG
1 ACCCCAG
6081 ACCCCAG
1 ACCCCAG
6088 ACCCCAG
1 ACCCCAG
6095 ACCCCAG
1 ACCCCAG
6102 ACCCCAG
1 ACCCCAG
6109 ACCCCAG
1 ACCCCAG
6116 ACCCCAG
1 ACCCCAG
6123 A-CCCAG
1 ACCCCAG
6129 ACCCCAG
1 ACCCCAG
6136 ACCCCAG
1 ACCCCAG
6143 A-CCCAG
1 ACCCCAG
6149 ACCCCAG
1 ACCCCAG
6156 ACCCCAG
1 ACCCCAG
6163 ACCCCAG
1 ACCCCAG
6170 ACCCCAG
1 ACCCCAG
6177 ACCCCAG
1 ACCCCAG
6184 ACCCCAG
1 ACCCCAG
6191 ACCCCAG
1 ACCCCAG
6198 A-CCCAG
1 ACCCCAG
6204 ACCCCAG
1 ACCCCAG
6211 ACCCCAG
1 ACCCCAG
6218 ACCCCAG
1 ACCCCAG
6225 ACCCCAG
1 ACCCCAG
6232 ACCCCAG
1 ACCCCAG
6239 ACCCCAG
1 ACCCCAG
6246 ACCCCAG
1 ACCCCAG
6253 ACCCCAG
1 ACCCCAG
6260 ACCCCAG
1 ACCCCAG
6267 ACCCCAG
1 ACCCCAG
6274 ACCCCAG
1 ACCCCAG
6281 ACCCCAG
1 ACCCCAG
6288 ACCCCAG
1 ACCCCAG
6295 ACCCCAG
1 ACCCCAG
6302 ACCCCAG
1 ACCCCAG
6309 ACCCCAG
1 ACCCCAG
6316 ACCCCAG
1 ACCCCAG
6323 ACCCCAG
1 ACCCCAG
6330 ACCCCAG
1 ACCCCAG
6337 ACCCCAG
1 ACCCCAG
6344 ACCCCAG
1 ACCCCAG
6351 ACCCCAG
1 ACCCCAG
6358 ACCCCAG
1 ACCCCAG
6365 ACCCCAG
1 ACCCCAG
6372 ACCCCAG
1 ACCCCAG
6379 ACCCCAG
1 ACCCCAG
6386 ACCCCAG
1 ACCCCAG
6393 ACCCCAG
1 ACCCCAG
6400 ACCCCAG
1 ACCCCAG
6407 ACCCCAG
1 ACCCCAG
6414 ACCCCAG
1 ACCCCAG
6421 ACCCCAG
1 ACCCCAG
6428 ACCCCAG
1 ACCCCAG
6435 ACCCCAG
1 ACCCCAG
6442 ACCCCAG
1 ACCCCAG
6449 ACCCCAG
1 ACCCCAG
6456 ACCCCAG
1 ACCCCAG
6463 ACCCCAG
1 ACCCCAG
6470 ACCCCAG
1 ACCCCAG
6477 ACCCCAG
1 ACCCCAG
6484 ACCCCAG
1 ACCCCAG
6491 ACCCCAG
1 ACCCCAG
6498 ACCCCAG
1 ACCCCAG
6505 ACCCCAG
1 ACCCCAG
6512 ACCCCAG
1 ACCCCAG
6519 ACCCCAG
1 ACCCCAG
6526 ACCCCAG
1 ACCCCAG
6533 ACCCCAG
1 ACCCCAG
6540 ACCCCAG
1 ACCCCAG
6547 ACCCCAG
1 ACCCCAG
6554 ACCCCAG
1 ACCCCAG
6561 ACCCCAG
1 ACCCCAG
6568 ACCCCAG
1 ACCCCAG
6575 ACCCCAG
1 ACCCCAG
6582 ACCCCAG
1 ACCCCAG
6589 ACCCCAG
1 ACCCCAG
6596 ACCCCAG
1 ACCCCAG
6603 ACCCCAG
1 ACCCCAG
6610 ACCCCAG
1 ACCCCAG
6617 ACCCCAG
1 ACCCCAG
6624 ACCC
1 ACCC
6628 TGCCGTTTCT
Statistics
Matches: 590, Mismatches: 0, Indels: 9
0.98 0.00 0.02
Matches are distributed among these distances:
6 30 0.05
7 560 0.95
ACGTcount: A:0.29, C:0.57, G:0.14, T:0.00
Consensus pattern (7 bp):
ACCCCAG
Found at i:11231 original size:21 final size:21
Alignment explanation
Indices: 11207--11247 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11197 AGTAAATCAA
*
11207 CAAATGAGTCAAATGACACCG
1 CAAATAAGTCAAATGACACCG
*
11228 CAAATAAGTCCAATGACACC
1 CAAATAAGTCAAATGACACC
11248 AGCAGAGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.44, C:0.27, G:0.15, T:0.15
Consensus pattern (21 bp):
CAAATAAGTCAAATGACACCG
Found at i:18396 original size:15 final size:17
Alignment explanation
Indices: 18372--18408 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
18362 TAATCTGATC
*
18372 CAAATGTAAAAA-AATT
1 CAAATATAAAAATAATT
18388 -AAATATAAAAATAATT
1 CAAATATAAAAATAATT
18404 CAAAT
1 CAAAT
18409 GCATCGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (17 bp):
CAAATATAAAAATAATT
Found at i:20570 original size:26 final size:26
Alignment explanation
Indices: 20541--20595 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
20531 CACAATTCAC
* *
20541 ATCATAATCCGAATCAAACAATGATA
1 ATCATAATCCAAATCAAACAATAATA
* *
20567 ATCATTATCCAAATCAAACATTAATA
1 ATCATAATCCAAATCAAACAATAATA
20593 ATC
1 ATC
20596 CGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.49, C:0.20, G:0.04, T:0.27
Consensus pattern (26 bp):
ATCATAATCCAAATCAAACAATAATA
Found at i:20660 original size:26 final size:26
Alignment explanation
Indices: 20630--20680 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20620 TTAAGAATAA
20630 ATTATCCAAATCAAACAATGATAATC
1 ATTATCCAAATCAAACAATGATAATC
*
20656 ATTATCCAAATGAAACAATGATAAT
1 ATTATCCAAATCAAACAATGATAAT
20681 TTAAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (26 bp):
ATTATCCAAATCAAACAATGATAATC
Found at i:20790 original size:36 final size:34
Alignment explanation
Indices: 20703--20790 Score: 88
Period size: 36 Copynumber: 2.5 Consensus size: 34
20693 CATTTAAGAA
*
20703 TATATTAATATAATT-TAAATTAATGTATTCTTAT
1 TATATTAATA-AATTATAAATTAATGTATTATTAT
* * * *
20737 GATATTTTATAATTTATAATTTAAATGTTATTATTAT
1 TATA-TTAATAAATTATAAATT-AATG-TATTATTAT
20774 TATATTAATAAATTATA
1 TATATTAATAAATTATA
20791 TAAATAATTT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
34 6 0.14
35 10 0.24
36 15 0.36
37 11 0.26
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (34 bp):
TATATTAATAAATTATAAATTAATGTATTATTAT
Found at i:21304 original size:21 final size:20
Alignment explanation
Indices: 21274--21315 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
21264 TAATTTAAAT
*
21274 TTAATTTAATTTAAGAATTTA
1 TTAATATAATTT-AGAATTTA
*
21295 TTAATATAATTTATAATTTA
1 TTAATATAATTTAGAATTTA
21315 T
1 T
21316 AATTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTAATATAATTTAGAATTTA
Found at i:21489 original size:14 final size:14
Alignment explanation
Indices: 21470--21501 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
21460 AAATATATAG
21470 AAATACAATGTCCT
1 AAATACAATGTCCT
21484 AAATACAATGTCCT
1 AAATACAATGTCCT
21498 AAAT
1 AAAT
21502 TCTTAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.28
Consensus pattern (14 bp):
AAATACAATGTCCT
Found at i:22880 original size:15 final size:17
Alignment explanation
Indices: 22856--22892 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
22846 TAATCTGATC
*
22856 CAAATGTAAAAA-AATT
1 CAAATATAAAAATAATT
22872 -AAATATAAAAATAATT
1 CAAATATAAAAATAATT
22888 CAAAT
1 CAAAT
22893 GCATCGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (17 bp):
CAAATATAAAAATAATT
Found at i:24867 original size:26 final size:26
Alignment explanation
Indices: 24838--24892 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
24828 CACAATTCAC
* *
24838 ATCATAATTCAAATCAAACAATGATA
1 ATCATAATCCAAATCAAACAATAATA
* *
24864 ATCATTATCCAAATCAAACATTAATA
1 ATCATAATCCAAATCAAACAATAATA
24890 ATC
1 ATC
24893 TGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (26 bp):
ATCATAATCCAAATCAAACAATAATA
Found at i:24957 original size:26 final size:26
Alignment explanation
Indices: 24927--24977 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
24917 TTAAGAATAA
24927 ATTATCCAAATCAAACAATGATAATC
1 ATTATCCAAATCAAACAATGATAATC
*
24953 ATTATCCAAATGAAACAATGATAAT
1 ATTATCCAAATCAAACAATGATAAT
24978 TTAAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (26 bp):
ATTATCCAAATCAAACAATGATAATC
Found at i:25299 original size:14 final size:14
Alignment explanation
Indices: 25280--25308 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25270 TAAATATATA
25280 ATAATTTATAGTTT
1 ATAATTTATAGTTT
25294 ATAATTTATAGTTT
1 ATAATTTATAGTTT
25308 A
1 A
25309 AATATTAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
ATAATTTATAGTTT
Found at i:25506 original size:21 final size:23
Alignment explanation
Indices: 25482--25525 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
25472 AATAATCTAA
*
25482 ATTAATTTAA-TTTA-AGAATAT
1 ATTAATATAATTTTATAGAATAT
25503 ATTAATATAATTTTATAGAATAT
1 ATTAATATAATTTTATAGAATAT
25526 GATTGGAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 4 0.20
23 7 0.35
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (23 bp):
ATTAATATAATTTTATAGAATAT
Found at i:28057 original size:21 final size:22
Alignment explanation
Indices: 27960--28057 Score: 66
Period size: 21 Copynumber: 4.5 Consensus size: 22
27950 CTATATAAAC
*
27960 AATATAATTTAAGAATA-AATT
1 AATATAATTTAAGAATATATTT
*
27981 AATTTAATTTAA-AA-ATATTT
1 AATATAATTTAAGAATATATTT
28001 AA-ATAATATT-AGAATA-ATTT
1 AATATAAT-TTAAGAATATATTT
* *
28021 AAATTATTTATGTTAAGAACATA-TT
1 -AA-TA-TAAT-TTAAGAATATATTT
28046 AATATAATTTAA
1 AATATAATTTAA
28058 ATCTATAATT
Statistics
Matches: 60, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
19 6 0.10
20 15 0.25
21 18 0.30
22 3 0.05
23 3 0.05
24 7 0.12
25 7 0.12
26 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.43
Consensus pattern (22 bp):
AATATAATTTAAGAATATATTT
Found at i:28066 original size:13 final size:13
Alignment explanation
Indices: 28048--28072 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
28038 AACATATTAA
28048 TATAATTTAAATC
1 TATAATTTAAATC
28061 TATAATTTAAAT
1 TATAATTTAAAT
28073 ATTAATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TATAATTTAAATC
Found at i:32368 original size:15 final size:17
Alignment explanation
Indices: 32344--32380 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
32334 TAATCTGATC
*
32344 CAAATGTAAAAA-AATT
1 CAAATATAAAAATAATT
32360 -AAATATAAAAATAATT
1 CAAATATAAAAATAATT
32376 CAAAT
1 CAAAT
32381 GCATCGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (17 bp):
CAAATATAAAAATAATT
Found at i:35078 original size:21 final size:20
Alignment explanation
Indices: 35048--35089 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
35038 TAATTTAAAT
*
35048 TTAATTTAATTTAAGAATTTA
1 TTAATATAATTTAA-AATTTA
*
35069 TTAATATAATTTTAAATTTA
1 TTAATATAATTTAAAATTTA
35089 T
1 T
35090 AATTTAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (20 bp):
TTAATATAATTTAAAATTTA
Found at i:35384 original size:20 final size:20
Alignment explanation
Indices: 35361--35403 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
35351 AATTTATGAA
*
35361 TAAATTATA-TAAAAATATTT
1 TAAATAATATTAAAAA-ATTT
*
35381 TAAATAATATTAGAAAATTT
1 TAAATAATATTAAAAAATTT
35401 TAA
1 TAA
35404 TTTAAGAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TAAATAATATTAAAAAATTT
Found at i:35404 original size:51 final size:50
Alignment explanation
Indices: 35349--35506 Score: 130
Period size: 51 Copynumber: 3.4 Consensus size: 50
35339 TATAAATTAA
*
35349 TTAATTTATGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAATT
1 TTAATTTAAGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAA-T
* *
35400 TTAATTTAAGAAT--A-TAT-TAACAAA-ATTTCAATTAATA-T----AAT
1 TTAATTTAAGAATAAATTATATAA-AAATATTTTAAATAATATTAGAAAAT
35441 CTT-A--T--GAATAAATTATATAAAAATATTTTAAATAATATTAGAAAAAT
1 -TTAATTTAAGAATAAATTATATAAAAATATTTTAAATAATATTAG-AAAAT
* *
35488 TTCATTTAAGAATATATTA
1 TTAATTTAAGAATAAATTA
35507 ACATAATTTC
Statistics
Matches: 83, Mismatches: 6, Indels: 36
0.66 0.05 0.29
Matches are distributed among these distances:
37 4 0.05
39 2 0.02
40 6 0.07
41 16 0.19
42 5 0.06
46 3 0.04
47 18 0.22
48 6 0.07
49 2 0.02
51 21 0.25
ACGTcount: A:0.52, C:0.03, G:0.04, T:0.42
Consensus pattern (50 bp):
TTAATTTAAGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAAT
Found at i:35447 original size:88 final size:88
Alignment explanation
Indices: 35343--35535 Score: 345
Period size: 88 Copynumber: 2.2 Consensus size: 88
35333 AAATTATATA
*
35343 AATTAAT-TAAT-TTATGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAATTTTAATT
1 AATTAATATAATCTTATGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAAATTTAATT
35406 TAAGAATATATTAACAAAATTTC
66 TAAGAATATATTAACAAAATTTC
*
35429 AATTAATATAATCTTATGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAAATTTCATT
1 AATTAATATAATCTTATGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAAATTTAATT
*
35494 TAAGAATATATTAACATAATTTC
66 TAAGAATATATTAACAAAATTTC
35517 AATTAATATAATCTTATGA
1 AATTAATATAATCTTATGA
35536 TATTTTATAA
Statistics
Matches: 102, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
86 7 0.07
87 4 0.04
88 91 0.89
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (88 bp):
AATTAATATAATCTTATGAATAAATTATATAAAAATATTTTAAATAATATTAGAAAAATTTAATT
TAAGAATATATTAACAAAATTTC
Found at i:35571 original size:16 final size:16
Alignment explanation
Indices: 35553--35586 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
35543 TAATTTATAA
*
35553 TTTATAAATAATTTAAT
1 TTTA-AAATAAATTAAT
35570 TTTAAAATAAATTAAT
1 TTTAAAATAAATTAAT
35586 T
1 T
35587 AAACTATACC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
TTTAAAATAAATTAAT
Found at i:38439 original size:3 final size:3
Alignment explanation
Indices: 38433--38492 Score: 50
Period size: 3 Copynumber: 18.7 Consensus size: 3
38423 ACAAAAAAAA
* *
38433 AAT AAT AAT AAGT AAT AAAT ATAT ATAT AAA AAG AGA- AAT AAT AAT
1 AAT AAT AAT AA-T AAT -AAT A-AT A-AT AAT AAT A-AT AAT AAT AAT
38479 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
38493 ATACAATGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
2 1 0.02
3 35 0.70
4 14 0.28
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:38653 original size:37 final size:36
Alignment explanation
Indices: 38607--38806 Score: 219
Period size: 37 Copynumber: 5.8 Consensus size: 36
38597 ATATTTTCAA
*
38607 AAAACGTTTTAAAAATTATATAACATATATATGTTTT-
1 AAAATGTTTTAAAAATTATAT-A-ATATATATGTTTTC
38644 AAAATGTTTTAAAAATTATATAATATATATATGTTTTC
1 AAAATGTTTTAAAAATTATAT-A-ATATATATGTTTTC
*
38682 AAAATGTTTTAAAAACTA-AT-A-ATATAT-TTTTC
1 AAAATGTTTTAAAAATTATATAATATATATGTTTTC
*
38714 AAAATG-TTTAAAAACTATAT-A-ATATATGTTTTC
1 AAAATGTTTTAAAAATTATATAATATATATGTTTTC
38747 AAAATGTTTTAAAAA--ACTATAATA-ATATGTTTTC
1 AAAATGTTTTAAAAATTA-TATAATATATATGTTTTC
*
38781 AAAAATGTTTTCAAAA-TATA-AATATA
1 -AAAATGTTTTAAAAATTATATAATATA
38807 CATATATATA
Statistics
Matches: 149, Mismatches: 4, Indels: 22
0.85 0.02 0.13
Matches are distributed among these distances:
31 11 0.07
32 21 0.14
33 20 0.13
34 24 0.16
35 18 0.12
36 1 0.01
37 37 0.25
38 17 0.11
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (36 bp):
AAAATGTTTTAAAAATTATATAATATATATGTTTTC
Found at i:38751 original size:33 final size:33
Alignment explanation
Indices: 38633--38806 Score: 207
Period size: 33 Copynumber: 5.2 Consensus size: 33
38623 TATATAACAT
38633 ATATATGTTTT-AAAATGTTTTAAAAATTATATAATA
1 ATATATGTTTTCAAAATGTTTT-AAAA--ATAT-ATA
38669 TATATATGTTTTCAAAATGTTTTAAAAACTA-ATA
1 -ATATATGTTTTCAAAATGTTTTAAAAA-TATATA
38703 ATATAT-TTTTCAAAATG-TTTAAAAACTATATA
1 ATATATGTTTTCAAAATGTTTTAAAAA-TATATA
38735 ATATATGTTTTCAAAATGTTTTAAAAA-ACTATA
1 ATATATGTTTTCAAAATGTTTTAAAAATA-TATA
*
38768 ATAATATGTTTTCAAAAATGTTTTCAAAATATA-A
1 AT-ATATGTTTTC-AAAATGTTTTAAAAATATATA
38802 ATATA
1 ATATA
38807 CATATATATA
Statistics
Matches: 127, Mismatches: 1, Indels: 22
0.85 0.01 0.15
Matches are distributed among these distances:
31 11 0.09
32 21 0.17
33 26 0.20
34 24 0.19
35 17 0.13
36 3 0.02
37 15 0.12
38 10 0.08
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.44
Consensus pattern (33 bp):
ATATATGTTTTCAAAATGTTTTAAAAATATATA
Found at i:38815 original size:2 final size:2
Alignment explanation
Indices: 38796--38829 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
38786 TGTTTTCAAA
* *
38796 AT AT AA AT AT AC AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38830 TCTAAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:38877 original size:10 final size:10
Alignment explanation
Indices: 38832--38878 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
38822 ATATATATTC
38832 TAAAT-AAAA
1 TAAATAAAAA
38841 TATAATAAAAA
1 TA-AATAAAAA
* *
38852 TGACTAAAAA
1 TAAATAAAAA
38862 TAAAATAAAAA
1 T-AAATAAAAA
38873 TAAATA
1 TAAATA
38879 TGGACGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 2 0.06
10 16 0.52
11 13 0.42
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:39637 original size:84 final size:83
Alignment explanation
Indices: 39409--40458 Score: 1073
Period size: 80 Copynumber: 12.9 Consensus size: 83
39399 AGCCCTTGAC
* * * *
39409 TAAGTTGTGCTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTTTTTGTTGGC
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGC
*
39474 AGATAA-CCTTCTTGA-T
66 AGATAACCCTTCTCGACT
*
39490 TAAGCTATGCTGCAAATGATGTGCCTTGGAG-TGAGCGTAGTCGAACTCAAAGGTCTTTGGTTGG
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTT-GTTGG
*
39554 CAGATAACCCTTCTCGATT
65 CAGATAACCCTTCTCGACT
39573 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGG
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTC-TTTGTTGG
*
39638 CAGATAACCCTTCTCGATT
65 CAGATAACCCTTCTCGACT
* * * * *** * *
39657 TAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTTTTTGGTGG
1 TAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGG
39722 CAGATAACCCTTCTCGA-T
65 CAGATAACCCTTCTCGACT
39740 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGG
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTC-TTTGTTGG
*
39805 CAGATAACCCTTCTCGATT
65 CAGATAACCCTTCTCGACT
* * * * * **
39824 TAAGTTATGCTGCAAATGATGTGCCTCGAAGCTGAGTGTAATCGAACTC--GGGGGTTT-TTGGC
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGC
* *
39886 AGATAGCCCTTCTCAACT
66 AGATAACCCTTCTCGACT
* * **
39904 TAAGCTATGCTGC-AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC-AAGGTCTTTGCTAAC
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGC
*
39967 AGATAA-CCTTCTAG-CT
66 AGATAACCCTTCTCGACT
* * * * * * * * * *
39983 TGAGTTATGCTGTAAATGTTATGCCCTGAAGCTGAGTGTAATCGAACTTAAGGGTC--T-TTGGC
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGC
* *
40045 AGGTAGCCCTTCTCGACT
66 AGATAACCCTTCTCGACT
* * * **
40063 TAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGCTAAC
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGC
* *
40128 AGATAACCC-TC-AGCCT
66 AGATAACCCTTCTCGACT
* * * * * * * * *
40144 TGAGTTATGCTGTAAATGTTATGCCCTTGAAGCTGAGTGTAATCGAACTTAAGGGTC--T-TTGG
1 TAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGG
* *
40206 CAGGTAGCCCTTCTCGAC-
65 CAGATAACCCTTCTCGACT
* * * **
40224 TAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA-TCAAAGGTCTTTGCTAAC
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGC
* *
40288 AGATAA-CCTTCTAGCCT
66 AGATAACCCTTCTCGACT
* * * * * * * * *
40305 TGAGTTATGCTGTAAATGTTATGCCCTTGAAG--GAGTGTAATCGAACTTAAGGGTC----TTGG
1 TAAGTTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGG
*
40364 CAGATAGCCCTTCTCGACT
65 CAGATAACCCTTCTCGACT
* *
40383 TAAGCTT-T-CTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTC-TTGGTGG
1 TAAG-TTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGG
* *
40445 CAGGTAGCCCTTCT
65 CAGATAACCCTTCT
40459 GGCCTGAGCT
Statistics
Matches: 786, Mismatches: 150, Indels: 66
0.78 0.15 0.07
Matches are distributed among these distances:
76 7 0.01
77 18 0.02
78 44 0.06
79 82 0.10
80 183 0.23
81 122 0.16
82 73 0.09
83 88 0.11
84 141 0.18
85 28 0.04
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (83 bp):
TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGTTGGC
AGATAACCCTTCTCGACT
Found at i:39756 original size:167 final size:164
Alignment explanation
Indices: 39409--40439 Score: 1276
Period size: 161 Copynumber: 6.4 Consensus size: 164
39399 AGCCCTTGAC
* * * * **
39409 TAAGTTGTGCTACAAATGATATGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGT-TTTTGTTGG
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGCTAA
* * * * * *
39473 CAGATAACCTTCTTGA-TTAAGCTATGCTGCAAATGATGTG-CCTTGGAG-TGAGCGTAGTCGAA
66 CAGATAACCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGAA
* * *
39535 CTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGATT
131 CTC-AAGG-GTTT--TTGGCAGATAGCCCTTCTCGACT
* **
39573 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGG
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGCTAA
* * * *
39638 CAGATAACCCTTCTCGATTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCGA
66 CAGATAA-CCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGA
** *
39703 ACTCGGGGGTTTTTGGTGGCAGATAACCCTTCTCGA-T
130 ACTCAAGGG-TTTT--TGGCAGATAGCCCTTCTCGACT
* **
39740 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGTTGG
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGCTAA
* * * *
39805 CAGATAACCCTTCTCGATTTAAGTTATGCTGCAAATGATGTG-CCTCGAAGCTGAGTGTAATCGA
66 CAGATAA-CCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGA
** *
39869 ACTCGGGGGTTTTTGGCAGATAGCCCTTCTCAACT
130 ACTCAAGGGTTTTTGGCAGATAGCCCTTCTCGACT
*
39904 TAAGCTATGCTGC-AATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTC-AAGGTC-TTTGCTAA
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGCTAA
* * *
39966 CAGATAACCTTCTAG-CTTGAGTTATGCTGTAAATGTTATGCCC-TGAAGCTGAGTGTAATCGAA
66 CAGATAACCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGAA
* * *
40029 CTTAAGGGTCTTTGGCAGGTAGCCCTTCTCGACT
131 CTCAAGGGTTTTTGGCAGATAGCCCTTCTCGACT
* *
40063 TAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTC-TTTGCTAA
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGCTAA
* * * * *
40127 CAGATAACCCTC-AGCCTTGAGTTATGCTGTAAATGTTATGCCCTTGAAGCTGAGTGTAATCGAA
66 CAGATAACCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGAA
* * *
40191 CTTAAGGGTCTTTGGCAGGTAGCCCTTCTCGAC-
131 CTCAAGGGTTTTTGGCAGATAGCCCTTCTCGACT
* *
40224 TAAGCTATTCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAA-TCAAAGGTC-TTTGCTAA
1 TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGCTAA
* * * *
40287 CAGATAACCTTCTAGCCTTGAGTTATGCTGTAAATGTTATGCCCTTGAAG--GAGTGTAATCGAA
66 CAGATAACCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGAA
* *
40350 CTTAAGGG-TCTTGGCAGATAGCCCTTCTCGACT
131 CTCAAGGGTTTTTGGCAGATAGCCCTTCTCGACT
*
40383 TAAGCTT-T-CTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTT
1 TAAG-TTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTT
40440 GGTGGCAGGT
Statistics
Matches: 809, Mismatches: 39, Indels: 42
0.91 0.04 0.05
Matches are distributed among these distances:
158 58 0.07
159 113 0.14
160 76 0.09
161 148 0.18
162 59 0.07
163 53 0.07
164 65 0.08
165 20 0.02
166 40 0.05
167 131 0.16
168 31 0.04
169 15 0.02
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.31
Consensus pattern (164 bp):
TAAGTTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTTGCTAA
CAGATAACCTTCTAGACTTAAGTTATGCTGCAAATGATATGCCCTTGAAGCTGAGTGTAATCGAA
CTCAAGGGTTTTTGGCAGATAGCCCTTCTCGACT
Found at i:46977 original size:3 final size:3
Alignment explanation
Indices: 46971--47034 Score: 53
Period size: 3 Copynumber: 20.7 Consensus size: 3
46961 GAACAAAAAA
*
46971 AAT AAT AAT AAT AAGT AAT AAAT ATAT ATAT AA- AA- AAG AGA- AAT
1 AAT AAT AAT AAT AA-T AAT -AAT A-AT A-AT AAT AAT AAT A-AT AAT
47015 AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
47035 ATACAATGAA
Statistics
Matches: 55, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
2 5 0.09
3 36 0.65
4 14 0.25
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:47120 original size:38 final size:37
Alignment explanation
Indices: 47043--47371 Score: 362
Period size: 38 Copynumber: 8.8 Consensus size: 37
47033 AAATACAATG
* ***
47043 AAAAAT-TTTT-AAAACTATATAATATATATGTTAAA
1 AAAAATGTTTTAAAAACTATATAATATATATATTTTC
* * * *
47078 AAAAATAATTTTTAAAACTATATATTATATATATATTC
1 AAAAAT-GTTTTAAAAACTATATAATATATATATTTTC
* *
47116 AAAAAATTGTTTTAAAAACCATATATTATATTTATATTTTC
1 -AAAAA-TGTTTTAAAAA-C-TATATAATATATATATTTTC
* * * *
47157 AAAAACGTTTTAAAAATTATATAACATATATATGTTTT
1 AAAAATGTTTTAAAAACTATATAATATATATAT-TTTC
* *
47195 TAAAATGTTTTAAAAATTATATAATATATATATGTTTTC
1 AAAAATGTTTTAAAAACTATATAATATATATA--TTTTC
*
47234 -AAAATGTTTTAAAAACTATATAATATATATTTTTTC
1 AAAAATGTTTTAAAAACTATATAATATATATATTTTC
*
47270 -AAAATGTTTTAAAAACTATATAATATATATGTTTTC
1 AAAAATGTTTTAAAAACTATATAATATATATATTTTC
*
47306 -AAAATGTTTTAAAAACTATATAATATATATGTTTTC
1 AAAAATGTTTTAAAAACTATATAATATATATATTTTC
* *
47342 AAAAATGTTTTCAAAATTATATAATATATA
1 AAAAATGTTTTAAAAACTATATAATATATA
47372 CATATATATA
Statistics
Matches: 256, Mismatches: 27, Indels: 20
0.84 0.09 0.07
Matches are distributed among these distances:
35 6 0.02
36 76 0.30
37 44 0.17
38 80 0.31
39 26 0.10
40 8 0.03
41 16 0.06
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (37 bp):
AAAAATGTTTTAAAAACTATATAATATATATATTTTC
Found at i:47260 original size:36 final size:36
Alignment explanation
Indices: 47044--47371 Score: 363
Period size: 36 Copynumber: 8.8 Consensus size: 36
47034 AATACAATGA
***
47044 AAAAT-TTTT-AAAACTATATAATATATATGTTAAAA
1 AAAATGTTTTAAAAACTATATAATATATATGTT-TTC
* * * * *
47079 AAAATAATTTTTAAAACTATATATTATATATATATTC
1 AAAAT-GTTTTAAAAACTATATAATATATATGTTTTC
* * *
47116 AAAAAATTGTTTTAAAAACCATATATTATATTTATATTTTC
1 --AAAA-TGTTTTAAAAA-C-TATATAATATATATGTTTTC
* * *
47157 AAAAACGTTTTAAAAATTATATAACATATATATGTTTTT
1 -AAAATGTTTTAAAAACTATAT-A-ATATATATGTTTTC
*
47196 AAAATGTTTTAAAAATTATATAATATATATATGTTTTC
1 AAAATGTTTTAAAAACTATAT-A-ATATATATGTTTTC
*
47234 AAAATGTTTTAAAAACTATATAATATATATTTTTTC
1 AAAATGTTTTAAAAACTATATAATATATATGTTTTC
47270 AAAATGTTTTAAAAACTATATAATATATATGTTTTC
1 AAAATGTTTTAAAAACTATATAATATATATGTTTTC
47306 AAAATGTTTTAAAAACTATATAATATATATGTTTTC
1 AAAATGTTTTAAAAACTATATAATATATATGTTTTC
* *
47342 AAAAATGTTTTCAAAATTATATAATATATA
1 -AAAATGTTTTAAAAACTATATAATATATA
47372 CATATATATA
Statistics
Matches: 256, Mismatches: 26, Indels: 20
0.85 0.09 0.07
Matches are distributed among these distances:
35 5 0.02
36 84 0.33
37 37 0.14
38 74 0.29
39 33 0.13
40 7 0.03
41 16 0.06
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.45
Consensus pattern (36 bp):
AAAATGTTTTAAAAACTATATAATATATATGTTTTC
Found at i:47370 original size:2 final size:2
Alignment explanation
Indices: 47359--47396 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
47349 TTTTCAAAAT
*
47359 TA TA TA -A TA TA TA CA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47397 TCTAAATAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:47444 original size:10 final size:10
Alignment explanation
Indices: 47399--47445 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
47389 ATATATATTC
47399 TAAAT-AAAA
1 TAAATAAAAA
47408 TATAATAAAAA
1 TA-AATAAAAA
* *
47419 TGACTAAAAA
1 TAAATAAAAA
47429 TAAAATAAAAA
1 T-AAATAAAAA
47440 TAAATA
1 TAAATA
47446 TGGACGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
9 2 0.06
10 16 0.52
11 13 0.42
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (10 bp):
TAAATAAAAA
Found at i:50875 original size:21 final size:22
Alignment explanation
Indices: 50778--50875 Score: 66
Period size: 21 Copynumber: 4.5 Consensus size: 22
50768 CTATATAAAC
*
50778 AATATAATTTAAGAATA-AATT
1 AATATAATTTAAGAATATATTT
*
50799 AATTTAATTTAA-AA-ATATTT
1 AATATAATTTAAGAATATATTT
50819 AA-ATAATATT-AGAATA-ATTT
1 AATATAAT-TTAAGAATATATTT
* *
50839 AAATTATTTATGTTAAGAACATA-TT
1 -AA-TA-TAAT-TTAAGAATATATTT
50864 AATATAATTTAA
1 AATATAATTTAA
50876 ATCTATAATT
Statistics
Matches: 60, Mismatches: 7, Indels: 20
0.69 0.08 0.23
Matches are distributed among these distances:
19 6 0.10
20 15 0.25
21 18 0.30
22 3 0.05
23 3 0.05
24 7 0.12
25 7 0.12
26 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.43
Consensus pattern (22 bp):
AATATAATTTAAGAATATATTT
Found at i:50884 original size:13 final size:13
Alignment explanation
Indices: 50866--50890 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
50856 AACATATTAA
50866 TATAATTTAAATC
1 TATAATTTAAATC
50879 TATAATTTAAAT
1 TATAATTTAAAT
50891 ATTAATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TATAATTTAAATC
Found at i:51181 original size:19 final size:20
Alignment explanation
Indices: 51153--51196 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
51143 AATTTAAGAA
*
51153 TAAATTATATAAAAAT-ATT
1 TAAATAATATAAAAATAATT
* *
51172 TAAATAATATTATAATAATT
1 TAAATAATATAAAAATAATT
51192 TAAAT
1 TAAAT
51197 CAATTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TAAATAATATAAAAATAATT
Found at i:51205 original size:26 final size:26
Alignment explanation
Indices: 51176--51239 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
51166 AATATTTAAA
51176 TAATATTATAATA-ATTTAA-ATCAATT
1 TAATATTATAATATA-TTAATAT-AATT
*
51202 TAAT-TTAAGAATATATTAATATAATT
1 TAATATT-ATAATATATTAATATAATT
*
51228 TAAAATTATAAT
1 TAATATTATAAT
51240 TTAAATATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
25 2 0.06
26 24 0.77
27 5 0.16
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (26 bp):
TAATATTATAATATATTAATATAATT
Found at i:51239 original size:13 final size:14
Alignment explanation
Indices: 51221--51249 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
51211 AATATATTAA
51221 TATAATTTAAA-AT
1 TATAATTTAAATAT
51234 TATAATTTAAATAT
1 TATAATTTAAATAT
51248 TA
1 TA
51250 ATATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TATAATTTAAATAT
Found at i:51239 original size:60 final size:58
Alignment explanation
Indices: 51112--51225 Score: 153
Period size: 60 Copynumber: 2.0 Consensus size: 58
51102 AATCCTAATT
*
51112 ATATTTAA-AA-ATTAT-ATAAATTAATTAATTTAATTTAAGAATAAATTATATAAAA
1 ATATTTAATAATATTATAATAAATTAATCAATTTAATTTAAGAATAAATTATATAAAA
* *
51167 ATATTTAAATAATATTATAATAATTTAAATCAATTTAATTTAAGAATATATTAATATAA
1 ATATTT-AATAATATTATAATAAATT-AATCAATTTAATTTAAGAATAAATT-ATATAA
51226 TTTAAAATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
55 6 0.12
56 2 0.04
57 2 0.04
58 5 0.10
59 6 0.12
60 23 0.46
61 6 0.12
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (58 bp):
ATATTTAATAATATTATAATAAATTAATCAATTTAATTTAAGAATAAATTATATAAAA
Found at i:55403 original size:13 final size:13
Alignment explanation
Indices: 55385--55522 Score: 114
Period size: 13 Copynumber: 9.3 Consensus size: 13
55375 GTCACAACCC
55385 GACCCGACCCGTT
1 GACCCGACCCGTT
55398 GACCCGATCCGACCCGTT
1 GA-CC---C-GACCCGTT
55416 GACCCGACCCGTT
1 GACCCGACCCGTT
55429 GACCCGACCCGACCCGTT
1 -----GACCCGACCCGTT
55447 GACCCGACCCGTT
1 GACCCGACCCGTT
55460 GACCCGACCTGACCCGTT
1 GA--C--CC-GACCCGTT
55478 GACCCGACCCGTT
1 GACCCGACCCGTT
55491 GACCCGACCCGTT
1 GACCCGACCCGTT
*
55504 GACCGTTGACCCGTT
1 GACC--CGACCCGTT
55519 GACC
1 GACC
55523 GTTGACCGGA
Statistics
Matches: 107, Mismatches: 1, Indels: 32
0.76 0.01 0.23
Matches are distributed among these distances:
13 50 0.47
14 5 0.05
15 13 0.12
16 1 0.01
17 5 0.05
18 33 0.31
ACGTcount: A:0.16, C:0.45, G:0.23, T:0.16
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:55423 original size:31 final size:30
Alignment explanation
Indices: 55385--55499 Score: 203
Period size: 31 Copynumber: 3.7 Consensus size: 30
55375 GTCACAACCC
55385 GACCCGACCCGTTGACCCGATCCGACCCGTT
1 GACCCGACCCGTTGACCCGA-CCGACCCGTT
55416 GACCCGACCCGTTGACCCGACCCGACCCGTT
1 GACCCGACCCGTTGACCCGA-CCGACCCGTT
55447 GACCCGACCCGTTGACCCGACCTGACCCGTT
1 GACCCGACCCGTTGACCCGACC-GACCCGTT
55478 GACCCGACCCGTTGACCCGACC
1 GACCCGACCCGTTGACCCGACC
55500 CGTTGACCGT
Statistics
Matches: 82, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
30 2 0.02
31 80 0.98
ACGTcount: A:0.17, C:0.47, G:0.23, T:0.14
Consensus pattern (30 bp):
GACCCGACCCGTTGACCCGACCGACCCGTT
Found at i:55498 original size:44 final size:44
Alignment explanation
Indices: 55406--55522 Score: 156
Period size: 44 Copynumber: 2.7 Consensus size: 44
55396 TTGACCCGAT
55406 CCGACCCGTTGACCCGACCCGTTGACCC---GACCCGACCCGTTGAC
1 CCGACCCGTTGACCCGA-CC--TGACCCGTTGACCCGACCCGTTGAC
55450 CCGACCCGTTGACCCGACCTGACCCGTTGACCCGACCCGTTGAC
1 CCGACCCGTTGACCCGACCTGACCCGTTGACCCGACCCGTTGAC
*
55494 CCGACCCGTTGA-CCG--TTGACCCGTTGACC
1 CCGACCCGTTGACCCGACCTGACCCGTTGACC
55523 GTTGACCGGA
Statistics
Matches: 69, Mismatches: 1, Indels: 9
0.87 0.01 0.11
Matches are distributed among these distances:
41 19 0.28
43 5 0.07
44 45 0.65
ACGTcount: A:0.15, C:0.45, G:0.23, T:0.16
Consensus pattern (44 bp):
CCGACCCGTTGACCCGACCTGACCCGTTGACCCGACCCGTTGAC
Found at i:55501 original size:18 final size:18
Alignment explanation
Indices: 55381--55488 Score: 128
Period size: 18 Copynumber: 6.6 Consensus size: 18
55371 ACCGGTCACA
55381 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
55399 ACCCGATCCGACCCGTT-
1 ACCCGACCCGACCCGTTG
55416 ----GACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
55430 ACCCGACCCGACCCGTT-
1 ACCCGACCCGACCCGTTG
55447 ----GACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
*
55461 ACCCGACCTGACCCGTTG
1 ACCCGACCCGACCCGTTG
55479 ACCCGACCCG
1 ACCCGACCCG
55489 TTGACCCGAC
Statistics
Matches: 76, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
13 25 0.33
18 51 0.67
ACGTcount: A:0.17, C:0.48, G:0.22, T:0.13
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:55511 original size:7 final size:7
Alignment explanation
Indices: 55499--55530 Score: 55
Period size: 7 Copynumber: 4.4 Consensus size: 7
55489 TTGACCCGAC
55499 CCGTTGA
1 CCGTTGA
55506 CCGTTGA
1 CCGTTGA
55513 CCCGTTGA
1 -CCGTTGA
55521 CCGTTGA
1 CCGTTGA
55528 CCG
1 CCG
55531 GAGTTGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 17 0.71
8 7 0.29
ACGTcount: A:0.12, C:0.34, G:0.28, T:0.25
Consensus pattern (7 bp):
CCGTTGA
Found at i:56863 original size:18 final size:18
Alignment explanation
Indices: 56837--56872 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
56827 TCGAAAGGAC
*
56837 TGAAGTAAATGATAAGAT
1 TGAAGTAAATAATAAGAT
*
56855 TGAATTAAATAATAAGAT
1 TGAAGTAAATAATAAGAT
56873 CGGATGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TGAAGTAAATAATAAGAT
Found at i:58016 original size:48 final size:48
Alignment explanation
Indices: 57964--58095 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 48
57954 AATATTTTAC
57964 CTGATTTTCGATTTGATTTCTGATCTGATACTTGACATGGATTCTGAT
1 CTGATTTTCGATTTGATTTCTGATCTGATACTTGACATGGATTCTGAT
* * *
58012 CTGA-TATCTGATATGGA-TTCTGATCTGATACTTGACTTGGATTCTGAT
1 CTGATTTTC-GAT-TTGATTTCTGATCTGATACTTGACATGGATTCTGAT
** *
58060 CTG-TTACTT-GACCTGATTTCTGATATGATACTTGAC
1 CTGATT--TTCGATTTGATTTCTGATCTGATACTTGAC
58096 CTGATTTATA
Statistics
Matches: 70, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
47 5 0.07
48 61 0.87
49 3 0.04
50 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (48 bp):
CTGATTTTCGATTTGATTTCTGATCTGATACTTGACATGGATTCTGAT
Found at i:58102 original size:24 final size:24
Alignment explanation
Indices: 57981--58095 Score: 153
Period size: 24 Copynumber: 4.8 Consensus size: 24
57971 TCGATTTGAT
57981 TTCTGATCTGATACTTGACATGGA
1 TTCTGATCTGATACTTGACATGGA
*
58005 TTCTGATCTGATA-TCTGATATGGA
1 TTCTGATCTGATACT-TGACATGGA
*
58029 TTCTGATCTGATACTTGACTTGGA
1 TTCTGATCTGATACTTGACATGGA
* *
58053 TTCTGATCTGTTACTTGACCT-GA
1 TTCTGATCTGATACTTGACATGGA
*
58076 TTTCTGATATGATACTTGAC
1 -TTCTGATCTGATACTTGAC
58096 CTGATTTATA
Statistics
Matches: 81, Mismatches: 7, Indels: 6
0.86 0.07 0.06
Matches are distributed among these distances:
23 3 0.04
24 77 0.95
25 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.42
Consensus pattern (24 bp):
TTCTGATCTGATACTTGACATGGA
Found at i:58112 original size:24 final size:24
Alignment explanation
Indices: 58032--58104 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
58022 ATATGGATTC
* * *
58032 TGATCTGATACTTGACTTGGA-TTC
1 TGATATGATACTTGACCT-GATTTA
* * *
58056 TGATCTGTTACTTGACCTGATTTC
1 TGATATGATACTTGACCTGATTTA
58080 TGATATGATACTTGACCTGATTTA
1 TGATATGATACTTGACCTGATTTA
58104 T
1 T
58105 ATTTTGATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
23 2 0.05
24 41 0.95
ACGTcount: A:0.22, C:0.16, G:0.18, T:0.44
Consensus pattern (24 bp):
TGATATGATACTTGACCTGATTTA
Found at i:59778 original size:15 final size:17
Alignment explanation
Indices: 59754--59790 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
59744 TAATCTGATC
*
59754 CAAATGTAAAAA-AATT
1 CAAATATAAAAATAATT
59770 -AAATATAAAAATAATT
1 CAAATATAAAAATAATT
59786 CAAAT
1 CAAAT
59791 GCATCGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 10 0.56
16 4 0.22
17 4 0.22
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.27
Consensus pattern (17 bp):
CAAATATAAAAATAATT
Found at i:61863 original size:26 final size:26
Alignment explanation
Indices: 61834--61888 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
61824 CACAATTCAC
* *
61834 ATCATAATTCAAATCAAACAATGATA
1 ATCATAATCCAAATCAAACAATAATA
* *
61860 ATCATTATCCAAATCAAACATTAATA
1 ATCATAATCCAAATCAAACAATAATA
61886 ATC
1 ATC
61889 CGAGTTTGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.51, C:0.18, G:0.02, T:0.29
Consensus pattern (26 bp):
ATCATAATCCAAATCAAACAATAATA
Found at i:61953 original size:26 final size:26
Alignment explanation
Indices: 61923--61973 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
61913 TTAAGAATAA
61923 ATTATCCAAATCAAACAATGATAATC
1 ATTATCCAAATCAAACAATGATAATC
*
61949 ATTATCCAAATGAAACAATGATAAT
1 ATTATCCAAATCAAACAATGATAAT
61974 TTAAATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.16, G:0.06, T:0.27
Consensus pattern (26 bp):
ATTATCCAAATCAAACAATGATAATC
Found at i:62596 original size:31 final size:30
Alignment explanation
Indices: 62541--62619 Score: 88
Period size: 31 Copynumber: 2.5 Consensus size: 30
62531 TAGAGTGTGT
62541 TTTAATTAATATTATAATAATTTAAATTTAA
1 TTTAATT-ATATTATAATAATTTAAATTTAA
62572 TTTAATT-TATTATTAATAATTTTAAATTTATAA
1 TTTAATTATATTA-TAATAA-TTTAAA-TT-TAA
*
62605 TTTAAATAATATTAT
1 TTT-AATTATATTAT
62620 TATATGGGGC
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
29 5 0.12
30 6 0.15
31 13 0.32
32 2 0.05
33 6 0.15
34 4 0.10
35 5 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (30 bp):
TTTAATTATATTATAATAATTTAAATTTAA
Found at i:65187 original size:49 final size:49
Alignment explanation
Indices: 65115--65212 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
65105 CAAATACATA
65115 GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
1 GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
* * *
65164 GACAACTGATCCACGTTGTTACCTGTATGAAATTCAAAACCAATAGTAT
1 GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
65213 AAAGACTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (49 bp):
GACAAATGATCCACGTTGTTACCTATATGAAATTCAAAACCAAGAGTAT
Found at i:68399 original size:2 final size:2
Alignment explanation
Indices: 68392--68430 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
68382 AAATATTTGG
68392 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
68431 AATTAAAGTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:73113 original size:26 final size:26
Alignment explanation
Indices: 73081--73130 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
73071 ATGTACTAAT
73081 TAATTAATTAATCCATAGGCGTTTAA
1 TAATTAATTAATCCATAGGCGTTTAA
73107 TAATTAATTAATCCATAGGCGTTT
1 TAATTAATTAATCCATAGGCGTTT
73131 TTCTCAATGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (26 bp):
TAATTAATTAATCCATAGGCGTTTAA
Done.