Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007574.1 Hibiscus syriacus cultivar Beakdansim tig00021590_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 161221
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
File 1 of 2
Found at i:955 original size:128 final size:129
Alignment explanation
Indices: 787--1129 Score: 498
Period size: 128 Copynumber: 2.6 Consensus size: 129
777 TAAATTATTA
787 TTATTT-TTCAATATT-AAGAAATTGA-CTGTCTTAAAGCAACTAGAAGTCATTTTCTGGTATTT
1 TTATTTATT-AATATTGAAGAAATTGATC-GTCTTAAAGCAACTAGAAGTCATTTTCTGGTATTT
849 TTAAATAAATAAATATTTTACTTTTATAAATTATATATTAATTTTATTATTAGGAAAATG-TTTA
64 TTAAATAAATAAATATTTTACTTTTATAAATTATATATTAATTTTATTATTAGGAAAATGTTTTA
913 T
129 T
* * *
914 TTATTTATTAATATTGAAGAAATTGATCGTCTTAAAACAACTAAAAGTCTTTTTCTGGTATTTTT
1 TTATTTATTAATATTGAAGAAATTGATCGTCTTAAAGCAACTAGAAGTCATTTTCTGGTATTTTT
979 AAATAAATAAATATTTTACTTTTATAAATTATATATTAATTTTATTATTAGGAAAATGTTTATTT
66 AAATAAATAAATATTTTACTTTTATAAATTATATATTAATTTTATTATTAGGAAAATG--T-TTT
1044 AT
128 AT
** * * **
1046 TTATTTATTAATATTGAAGAAAGGGGTTGTCTTAAAGCAACTAGAAGT-ATTTTTCTAAATATTT
1 TTATTTATTAATATTGAAGAAATTGATCGTCTTAAAGCAACTAGAAGTCA-TTTTCT-GGTATTT
*
1110 TTAAATAAATAAATACTTTA
64 TTAAATAAATAAATATTTTA
1130 TTTATCATCT
Statistics
Matches: 194, Mismatches: 13, Indels: 12
0.89 0.06 0.05
Matches are distributed among these distances:
127 12 0.06
128 104 0.54
129 1 0.01
132 53 0.27
133 24 0.12
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (129 bp):
TTATTTATTAATATTGAAGAAATTGATCGTCTTAAAGCAACTAGAAGTCATTTTCTGGTATTTTT
AAATAAATAAATATTTTACTTTTATAAATTATATATTAATTTTATTATTAGGAAAATGTTTTAT
Found at i:3504 original size:43 final size:43
Alignment explanation
Indices: 3449--3590 Score: 143
Period size: 43 Copynumber: 3.4 Consensus size: 43
3439 ATAACATGGT
* *
3449 TCCTACGCGATGAGGACGACTGATTATCTAGGGGTGACATGGC
1 TCCTACGTGATGAGGACGACTGATTATCTAGGGGTGACACGGC
* * * *
3492 TCCTACGTGATGAGGATGTCTG---GTC--GGTGGATGACACGGT
1 TCCTACGTGATGAGGACGACTGATTATCTAGG-GG-TGACACGGC
*
3532 TCCTACGTGATGTGGACGACT-AGTTATCTAGGGGTGACACGGC
1 TCCTACGTGATGAGGACGACTGA-TTATCTAGGGGTGACACGGC
*
3575 TCTTACGTGATGAGGA
1 TCCTACGTGATGAGGA
3591 GGTCTGGTCG
Statistics
Matches: 78, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
38 2 0.03
39 2 0.03
40 27 0.35
43 43 0.55
44 2 0.03
45 2 0.03
ACGTcount: A:0.21, C:0.19, G:0.34, T:0.26
Consensus pattern (43 bp):
TCCTACGTGATGAGGACGACTGATTATCTAGGGGTGACACGGC
Found at i:3538 original size:40 final size:40
Alignment explanation
Indices: 3483--3611 Score: 127
Period size: 40 Copynumber: 3.1 Consensus size: 40
3473 TATCTAGGGG
*
3483 TGACATGGCTCCTACGTGATGAGGATGTCTGGTCGGTGGA
1 TGACACGGCTCCTACGTGATGAGGATGTCTGGTCGGTGGA
* * * * *
3523 TGACACGGTTCCTACGTGATGTGGACGACTAGTTATCTAGG-GG-
1 TGACACGGCTCCTACGTGATGAGGATGTCT-G--GTC--GGTGGA
* *
3566 TGACACGGCTCTTACGTGATGAGGAGGTCTGGTCGGTGGA
1 TGACACGGCTCCTACGTGATGAGGATGTCTGGTCGGTGGA
3606 TGACAC
1 TGACAC
3612 AGTTTCTACA
Statistics
Matches: 70, Mismatches: 12, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
38 2 0.03
39 2 0.03
40 33 0.47
41 1 0.01
42 1 0.01
43 27 0.39
44 2 0.03
45 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.36, T:0.26
Consensus pattern (40 bp):
TGACACGGCTCCTACGTGATGAGGATGTCTGGTCGGTGGA
Found at i:3585 original size:83 final size:83
Alignment explanation
Indices: 3446--3630 Score: 282
Period size: 83 Copynumber: 2.2 Consensus size: 83
3436 GTGATAACAT
* *
3446 GGTTCCTACGCGATGAGGACGACTGATTATCTAGGGGTGACATGGCTCCTACGTGATGAGGATGT
1 GGTTCCTACGCGATGAGGACGACTGATTATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGGT
3511 CTGGTCGGTGGATGACAC
66 CTGGTCGGTGGATGACAC
* * *
3529 GGTTCCTACGTGATGTGGACGACT-AGTTATCTAGGGGTGACACGGCTCTTACGTGATGAGGAGG
1 GGTTCCTACGCGATGAGGACGACTGA-TTATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGG
3593 TCTGGTCGGTGGATGACAC
65 TCTGGTCGGTGGATGACAC
* * *
3612 AGTTTCTACACGATGAGGA
1 GGTTCCTACGCGATGAGGA
3631 TGGTAGACCA
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
82 1 0.01
83 90 0.99
ACGTcount: A:0.21, C:0.18, G:0.35, T:0.26
Consensus pattern (83 bp):
GGTTCCTACGCGATGAGGACGACTGATTATCTAGGGGTGACACGGCTCCTACGTGATGAGGAGGT
CTGGTCGGTGGATGACAC
Found at i:3816 original size:73 final size:73
Alignment explanation
Indices: 3721--3860 Score: 201
Period size: 73 Copynumber: 1.9 Consensus size: 73
3711 CAAAGGTTGG
* * * *
3721 TGTTTCAAGGGAAATTGTCTCAAGAGAGA-TAAAACTTGTTTAAAGAGAAATAGACTCAAATGTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACT-AAACTTGTTTAAAGAGAAACAGACTCAAAGGTT
3785 TTTTTGTTT
65 TTTTTGTTT
* * *
3794 TGTTTCAAGTGAAACTATCTCAAGAGAGACTAAATTTGTTTCAAGAGAAACAGACTCAAAGGTTT
1 TGTTTCAAGGGAAACTATCTCAAGAGAGACTAAACTTGTTTAAAGAGAAACAGACTCAAAGGTTT
3859 TT
66 TT
3861 CTTAAAGAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
73 58 0.98
74 1 0.02
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (73 bp):
TGTTTCAAGGGAAACTATCTCAAGAGAGACTAAACTTGTTTAAAGAGAAACAGACTCAAAGGTTT
TTTTGTTT
Found at i:4006 original size:36 final size:37
Alignment explanation
Indices: 3962--4082 Score: 104
Period size: 37 Copynumber: 3.3 Consensus size: 37
3952 ATCGTAAAGG
**
3962 AAAATGTCTCAAGCGAGATGAAATTTG-TTTT-GATA
1 AAAATGTCTCAAGCGAGACAAAATTTGTTTTTAGATA
*
3997 AAAATTGTCTTAAGCGAGACAAAATTTGTTTTTAGATA
1 AAAA-TGTCTCAAGCGAGACAAAATTTGTTTTTAGATA
* * * * * * *
4035 AAACTATCTTAAGTGATACAATATTTTTTTTTAAGA-A
1 AAAATGTCTCAAGCGAGACAAAATTTGTTTTT-AGATA
4072 AAAATTGTCTC
1 AAAA-TGTCTC
4083 TAGTGAGATA
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
35 4 0.06
36 20 0.29
37 31 0.45
38 14 0.20
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (37 bp):
AAAATGTCTCAAGCGAGACAAAATTTGTTTTTAGATA
Found at i:8168 original size:30 final size:30
Alignment explanation
Indices: 8134--8195 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
8124 ATGATGAAAA
* **
8134 TAACATAAACAAAAGAGAAAAACTTGTTAG
1 TAACACAAACAAAAGAGAAAAACGAGTTAG
8164 TAACACAAACAAAAGAGAAAAACGAGTTAG
1 TAACACAAACAAAAGAGAAAAACGAGTTAG
8194 TA
1 TA
8196 CAAGCAAGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.58, C:0.11, G:0.15, T:0.16
Consensus pattern (30 bp):
TAACACAAACAAAAGAGAAAAACGAGTTAG
Found at i:10703 original size:27 final size:27
Alignment explanation
Indices: 10666--10738 Score: 137
Period size: 27 Copynumber: 2.7 Consensus size: 27
10656 CCACCGCCAT
10666 CACCACTTTGAACTTGAAACTCCATAG
1 CACCACTTTGAACTTGAAACTCCATAG
10693 CACCACTTTGAACTTGAAACTCCATAG
1 CACCACTTTGAACTTGAAACTCCATAG
*
10720 CATCACTTTGAACTTGAAA
1 CACCACTTTGAACTTGAAA
10739 GCCACAGTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.27
Consensus pattern (27 bp):
CACCACTTTGAACTTGAAACTCCATAG
Found at i:15349 original size:6 final size:6
Alignment explanation
Indices: 15340--15395 Score: 85
Period size: 6 Copynumber: 9.3 Consensus size: 6
15330 TAATTCTAAT
* * *
15340 ACTAGA ACTAGA CCTAGA CCTAGA ACTAGA ACTAGA ACTAGA CCTAGA
1 ACTAGA ACTAGA ACTAGA ACTAGA ACTAGA ACTAGA ACTAGA ACTAGA
15388 ACTAGA AC
1 ACTAGA AC
15396 AACTCTTATA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.45, C:0.23, G:0.16, T:0.16
Consensus pattern (6 bp):
ACTAGA
Found at i:23445 original size:21 final size:21
Alignment explanation
Indices: 23419--23465 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
23409 ACAACACCAA
23419 CAATATTATGAATTATCATAT
1 CAATATTATGAATTATCATAT
* *
23440 CAATATTATTAATTCTCATAT
1 CAATATTATGAATTATCATAT
*
23461 TAATA
1 CAATA
23466 ACTGTCGTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.45
Consensus pattern (21 bp):
CAATATTATGAATTATCATAT
Found at i:25432 original size:3 final size:3
Alignment explanation
Indices: 25424--25462 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
25414 AATTATTTTT
* *
25424 TAA TAA TAA TTA TTA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
25463 AATGAGTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:25968 original size:112 final size:113
Alignment explanation
Indices: 25710--26337 Score: 777
Period size: 113 Copynumber: 5.5 Consensus size: 113
25700 TTGAATAAGC
* * *
25710 TCTTCTCATTATGAACTTCTTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
* * * * * ***
25775 AAAGGTTGATGCTAACAT-ATATGTGATAAAATTATG--TAAAAGGTTGAACAGGC
66 AAAAGCTGAT-C---CATCA-A-GTGAT-GAATT-TGAACAAAAGGTTAAACAAAT
* *
25828 TCTTCTCATTGTGAACTTCTTCTTCC-TCTTCAGATAAGTTCTTCTTATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
* * *
25892 AAATA-TTGATCCATCAAGTGATGAATTTGAATAAAAGGTTAAACAAGT
66 AAA-AGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAAAT
* *
25940 TCTTCTCATTATGAACTTCTTCTTCC-TCTTTAGATAAGTTCTTCTTATTATGAACTTTCTCTGG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
*
26004 AAAAGCTGATCCATCAAGTGATGAATTTGAGCAAAAGGTTAAACAAAT
66 AAAAGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAAAT
* ****
26052 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAA-TTCTTCTCATTATGAACTCGAACTG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-AAGTTCTTCTCATTATGAACTTTCTCTG
26116 GAAAAGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAAAT
65 GAAAAGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAAAT
* ****
26165 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAA-TTCTTCTCATTATGAACTCGAACTG
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT-AAGTTCTTCTCATTATGAACTTTCTCTG
* *
26229 GAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTAAACAAAT
65 GAAAAGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAAAT
* *
26278 TCTTCTCATTATGAATTTCTTCTTCCTTCTTCAAATGATGAGTTCTTCTCATTATGAACT
1 TCTTCTCATTATGAACTTCTTCTTCCTTCTTC--A-GATAAGTTCTTCTCATTATGAACT
26338 CGAATTGGAA
Statistics
Matches: 472, Mismatches: 27, Indels: 24
0.90 0.05 0.05
Matches are distributed among these distances:
110 2 0.00
111 5 0.01
112 148 0.31
113 223 0.47
114 3 0.01
115 2 0.00
116 22 0.05
117 43 0.09
118 24 0.05
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Consensus pattern (113 bp):
TCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATAAGTTCTTCTCATTATGAACTTTCTCTGG
AAAAGCTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAAAT
Found at i:27216 original size:94 final size:92
Alignment explanation
Indices: 27055--27419 Score: 471
Period size: 94 Copynumber: 4.0 Consensus size: 92
27045 CGATCATGCA
* * * * * *
27055 ATTCATCTTTTAATTCCAATGATTGGTTCTGTGGTTCCTATCG-AACCAGATCAGATAACTCAGA
1 ATTCATCTTTCAAGTCCAATGATTGGTTTTGGGGTTCATA-CGAAACCAGATCAGATAACTCAAA
* *
27119 GAACACTTCCAAAAGATGCTATAAGCAC
65 GAACACTTCCAGAAGATGCTATGAGCAC
27147 ATTCATCTTTCAAGTCCAATGATTGGTTTTTCGGGGTTCATACGAAACCAGATCAGATAACTCAA
1 ATTCATCTTTCAAGTCCAATGATTGG-TTTT-GGGGTTCATACGAAACCAGATCAGATAACTCAA
*
27212 AGAACACTTCCAGTAGATGCTATGAGCAC
64 AGAACACTTCCAGAAGATGCTATGAGCAC
* * * * * *
27241 ATTCCTCTTCCAAATTCAATGATT-G--AT----TT--TACTAAACCAGATCAGATAACTCAAAG
1 ATTCATCTTTCAAGTCCAATGATTGGTTTTGGGGTTCATACGAAACCAGATCAGATAACTCAAAG
27297 AACACTTCCAGAAGATGCTATGAGCAC
66 AACACTTCCAGAAGATGCTATGAGCAC
*
27324 ATTCATCTTTCAAGTCCAATGATTGGTTTTTCGGGGTTCATACCAAACCAGATCAGATAACTCAA
1 ATTCATCTTTCAAGTCCAATGATTGG-TTTT-GGGGTTCATACGAAACCAGATCAGATAACTCAA
27389 AGAACACTTCCAGAAGATGCTATGAGCAC
64 AGAACACTTCCAGAAGATGCTATGAGCAC
27418 AT
1 AT
27420 GGCATTTGTT
Statistics
Matches: 237, Mismatches: 22, Indels: 26
0.83 0.08 0.09
Matches are distributed among these distances:
83 72 0.30
84 1 0.00
85 2 0.01
87 1 0.00
90 1 0.00
92 26 0.11
93 6 0.03
94 128 0.54
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.29
Consensus pattern (92 bp):
ATTCATCTTTCAAGTCCAATGATTGGTTTTGGGGTTCATACGAAACCAGATCAGATAACTCAAAG
AACACTTCCAGAAGATGCTATGAGCAC
Found at i:27305 original size:83 final size:87
Alignment explanation
Indices: 27186--27419 Score: 305
Period size: 83 Copynumber: 2.7 Consensus size: 87
27176 TTCGGGGTTC
* * *
27186 ATACGAAACCAGATCAGATAACTCAAAGAACACTTCCAGTAGATGCTATGAGCACATTCCTCTTC
1 ATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTC
*
27251 CAAATTCAATGATT-G-AT-TT
66 CAAATCCAATGATTGGTATGTT
* *
27270 -TACTAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTT
1 ATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTC
* *
27334 CAAGTCCAATGATTGGTTTTTCGGGGTT
66 CAAATCCAATGATTGG--TAT----GTT
27362 CATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACAT
1 -ATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACAT
27420 GGCATTTGTT
Statistics
Matches: 131, Mismatches: 8, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
83 72 0.55
84 1 0.01
87 1 0.01
92 2 0.02
94 55 0.42
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.26
Consensus pattern (87 bp):
ATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTC
CAAATCCAATGATTGGTATGTT
Found at i:27394 original size:177 final size:177
Alignment explanation
Indices: 27098--27419 Score: 599
Period size: 177 Copynumber: 1.8 Consensus size: 177
27088 GTTCCTATCG
*
27098 AACCAGATCAGATAACTCAGAGAACACTTCCAAAAGATGCTATAAGCACATTCATCTTTCAAGTC
1 AACCAGATCAGATAACTCAAAGAACACTTCCAAAAGATGCTATAAGCACATTCATCTTTCAAGTC
* *
27163 CAATGATTGGTTTTTCGGGGTTCATACGAAACCAGATCAGATAACTCAAAGAACACTTCCAGTAG
66 CAATGATTGGTTTTTCGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
27228 ATGCTATGAGCACATTCCTCTTCCAAATTCAATGATTGATTTTACTA
131 ATGCTATGAGCACATTCCTCTTCCAAATTCAATGATTGATTTTACTA
* *
27275 AACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGAGCACATTCATCTTTCAAGTC
1 AACCAGATCAGATAACTCAAAGAACACTTCCAAAAGATGCTATAAGCACATTCATCTTTCAAGTC
27340 CAATGATTGGTTTTTCGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
66 CAATGATTGGTTTTTCGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
27405 ATGCTATGAGCACAT
131 ATGCTATGAGCACAT
27420 GGCATTTGTT
Statistics
Matches: 140, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
177 140 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (177 bp):
AACCAGATCAGATAACTCAAAGAACACTTCCAAAAGATGCTATAAGCACATTCATCTTTCAAGTC
CAATGATTGGTTTTTCGGGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAG
ATGCTATGAGCACATTCCTCTTCCAAATTCAATGATTGATTTTACTA
Found at i:28683 original size:7 final size:7
Alignment explanation
Indices: 28667--28760 Score: 90
Period size: 7 Copynumber: 13.7 Consensus size: 7
28657 TTGACCCCCC
28667 TTTTTC-
1 TTTTTCT
28673 TTTTTCT
1 TTTTTCT
28680 TTTTTCT
1 TTTTTCT
*
28687 TTTCTC-
1 TTTTTCT
28693 TTTTT-T
1 TTTTTCT
*
28699 TCTTTCT
1 TTTTTCT
28706 TTTTTCT
1 TTTTTCT
28713 CTTTTTCT
1 -TTTTTCT
28721 TCTTTT-T
1 T-TTTTCT
28728 TCTTTTCT
1 T-TTTTCT
*
28736 TTTCT-T
1 TTTTTCT
28742 TTTTTCT
1 TTTTTCT
*
28749 TCTTTCT
1 TTTTTCT
28756 TTTTT
1 TTTTT
28761 TCTTCAAGCA
Statistics
Matches: 73, Mismatches: 8, Indels: 13
0.78 0.09 0.14
Matches are distributed among these distances:
6 19 0.26
7 41 0.56
8 13 0.18
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTCT
Found at i:28765 original size:15 final size:15
Alignment explanation
Indices: 28667--28765 Score: 98
Period size: 15 Copynumber: 6.6 Consensus size: 15
28657 TTGACCCCCC
28667 TTTTTCTT-TTTCTT
1 TTTTTCTTCTTTCTT
* *
28681 TTTTCTTTTCTCTTTTT
1 TTTT-TCTTCT-TTCTT
* *
28698 TTCTTTCTTTTTTCTC
1 TT-TTTCTTCTTTCTT
28714 TTTTTCTTCTTT-TT
1 TTTTTCTTCTTTCTT
28728 TCTTTTC-T-TTTCTT
1 T-TTTTCTTCTTTCTT
28742 TTTTTCTTCTTTCTT
1 TTTTTCTTCTTTCTT
28757 TTTTTCTTC
1 TTTTTCTTC
28766 AAGCATAATA
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
13 8 0.12
14 11 0.16
15 32 0.46
16 6 0.09
17 10 0.14
18 2 0.03
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTCTTCTTTCTT
Found at i:36113 original size:15 final size:15
Alignment explanation
Indices: 36090--36121 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
36080 TGAAATGAAT
36090 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
36105 AATGTATGTATGCAA
1 AATGAATGTATGCAA
36120 AA
1 AA
36122 AGGTATTGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:41538 original size:3 final size:3
Alignment explanation
Indices: 41530--41565 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
41520 AATTAATTTT
41530 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
41566 AATGAGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:42219 original size:29 final size:29
Alignment explanation
Indices: 42157--42290 Score: 124
Period size: 29 Copynumber: 4.5 Consensus size: 29
42147 AACCCAACCA
* * **
42157 TAGGTCGCCAAGCACTCCAAGCGACCTAC
1 TAGGTCGCCATGCACTCCCAGCGACCTTG
*
42186 AAGGTCGCCATGCACTCCCAGCGACCTTG
1 TAGGTCGCCATGCACTCCCAGCGACCTTG
* * * *
42215 TAGGTCGCCAAGCAATCCCGGCGACCAAGATGG
1 TAGGTCGCCATGCACTCCCAGCGACC----TTG
* * *
42248 TAGGTCGCCATGTACGCCCAGCGACCTTA
1 TAGGTCGCCATGCACTCCCAGCGACCTTG
42277 TAGGTCGCCATGCA
1 TAGGTCGCCATGCA
42291 TGCCGGCGTC
Statistics
Matches: 83, Mismatches: 18, Indels: 8
0.76 0.17 0.07
Matches are distributed among these distances:
29 60 0.72
33 23 0.28
ACGTcount: A:0.24, C:0.34, G:0.25, T:0.16
Consensus pattern (29 bp):
TAGGTCGCCATGCACTCCCAGCGACCTTG
Found at i:42272 original size:62 final size:61
Alignment explanation
Indices: 42187--42303 Score: 171
Period size: 62 Copynumber: 1.9 Consensus size: 61
42177 GCGACCTACA
* *
42187 AGGTCGCCATGCACTCCCAGCGACCTTGTAGGTCGCCAAGCAATCCCGGCGACCAAGATGGT
1 AGGTCGCCATGCACGCCCAGCGACCTTATAGGTCGCCAAGC-ATCCCGGCGACCAAGATGGT
* * * *
42249 AGGTCGCCATGTACGCCCAGCGACCTTATAGGTCGCCATGCATGCCGGCGTCCAA
1 AGGTCGCCATGCACGCCCAGCGACCTTATAGGTCGCCAAGCATCCCGGCGACCAA
42304 CGTTGGGCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
61 12 0.24
62 37 0.76
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.17
Consensus pattern (61 bp):
AGGTCGCCATGCACGCCCAGCGACCTTATAGGTCGCCAAGCATCCCGGCGACCAAGATGGT
Found at i:42935 original size:21 final size:21
Alignment explanation
Indices: 42910--42953 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
42900 AATTTAGTTA
42910 ATTAGTTTGTTAGTATAAATT
1 ATTAGTTTGTTAGTATAAATT
* *
42931 ATTAGTTTGTTAGTTTAAGTT
1 ATTAGTTTGTTAGTATAAATT
42952 AT
1 AT
42954 ATTATATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (21 bp):
ATTAGTTTGTTAGTATAAATT
Found at i:42967 original size:28 final size:28
Alignment explanation
Indices: 42930--42983 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
42920 TAGTATAAAT
*
42930 TATTAGTTTGTTAGTTTAAGTTATATTA
1 TATTAATTTGTTAGTTTAAGTTATATTA
42958 TATTAATTTGTTAGTTTAAGTTATAT
1 TATTAATTTGTTAGTTTAAGTTATAT
42984 ATTAGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.13, T:0.57
Consensus pattern (28 bp):
TATTAATTTGTTAGTTTAAGTTATATTA
Found at i:46108 original size:39 final size:39
Alignment explanation
Indices: 46062--46159 Score: 106
Period size: 49 Copynumber: 2.3 Consensus size: 39
46052 TAGTAATGAT
46062 TAGTAATGATGAAATTATTATTAATATTTAATGATTTGA
1 TAGTAATGATGAAATTATTATTAATATTTAATGATTTGA
46101 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGA
1 TAGT-A--A-T-G-----ATGAAATTATTATTAATATTTAATGATTTGA
46150 TAGTAATGAT
1 TAGTAATGAT
46160 TAGTAATGAT
Statistics
Matches: 49, Mismatches: 0, Indels: 20
0.71 0.00 0.29
Matches are distributed among these distances:
39 6 0.12
40 1 0.02
42 1 0.02
43 1 0.02
44 2 0.04
45 1 0.02
46 1 0.02
48 1 0.02
49 35 0.71
ACGTcount: A:0.42, C:0.00, G:0.13, T:0.45
Consensus pattern (39 bp):
TAGTAATGATGAAATTATTATTAATATTTAATGATTTGA
Found at i:46109 original size:49 final size:49
Alignment explanation
Indices: 46052--46682 Score: 499
Period size: 60 Copynumber: 11.3 Consensus size: 49
46042 TTATAAGATT
* *
46052 TAGTAATGATTAGTAATGATGAAATTATTATTAATATTTAATGATTTGA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGA
*
46101 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAAT-TTT--T-A-ATGAT--T--TGA
*
46159 TTAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATATTAATGA
1 -TAGTAATGATTAGTAATAATGAAATTATTATTAAT-TTT--T-A-ATG--ATT--TGA
46218 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATAA
1 --TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGA-TT--T-G-----A
46278 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA
1 --TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTT-A--A--TGAT--T--TGA
46338 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGATAGTAATGA
1 --TAGTAATGATTAGTAATAATGAAATTATTATTAA-TTTT--TAA--TGAT--T--TGA
46398 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATA
1 --TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTG--A
*
46451 GTAATGATTATTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGA
1 -T-A-G-----TAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGA
46508 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTT-A--A--TGAT--T--TGA
46566 TTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGA
1 --TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGA
* *
46617 TAGTAATGATTAGTAATAAT-AATTTATTATTAATATTTAATGATTTGA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGA
*
46665 TATTAATGATTTAGTAAT
1 TAGTAATGA-TTAGTAAT
46683 GATTTGATAG
Statistics
Matches: 519, Mismatches: 12, Indels: 102
0.82 0.02 0.16
Matches are distributed among these distances:
48 34 0.07
49 98 0.19
50 3 0.01
51 5 0.01
52 3 0.01
53 6 0.01
54 13 0.03
55 12 0.02
56 4 0.01
57 6 0.01
58 6 0.01
59 106 0.20
60 205 0.39
61 7 0.01
62 1 0.00
63 2 0.00
64 1 0.00
65 4 0.01
66 3 0.01
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (49 bp):
TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGA
Found at i:46165 original size:10 final size:10
Alignment explanation
Indices: 46150--46176 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
46140 AATGATTTGA
46150 TAGTAATGAT
1 TAGTAATGAT
46160 TAGTAATGAT
1 TAGTAATGAT
46170 TAGTAAT
1 TAGTAAT
46177 AATGAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (10 bp):
TAGTAATGAT
Found at i:46166 original size:24 final size:24
Alignment explanation
Indices: 46090--46170 Score: 71
Period size: 21 Copynumber: 3.3 Consensus size: 24
46080 TATTAATATT
46090 TAATGATTTGATAGTAATGATTAG
1 TAATGATTTGATAGTAATGATTAG
* *
46114 TAATAATGAAATT-ATTATTAAT-ATT--
1 ---TAATG-ATTTGA-TAGTAATGATTAG
46139 TAATGATTTGATAGTAATGATTAG
1 TAATGATTTGATAGTAATGATTAG
46163 TAATGATT
1 TAATGATT
46171 AGTAATAATG
Statistics
Matches: 44, Mismatches: 4, Indels: 15
0.70 0.06 0.24
Matches are distributed among these distances:
21 9 0.20
22 9 0.20
24 8 0.18
27 9 0.20
28 9 0.20
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (24 bp):
TAATGATTTGATAGTAATGATTAG
Found at i:46252 original size:21 final size:21
Alignment explanation
Indices: 46225--46491 Score: 66
Period size: 21 Copynumber: 13.3 Consensus size: 21
46215 TGATTTAGTA
46225 ATGATTAGTAATAATGAAATT
1 ATGATTAGTAATAATGAAATT
* * **
46246 ATTATTAATTTTTAATG--ATT
1 ATGATT-AGTAATAATGAAATT
** * *
46266 -TGA-TAGTAATAATTTAGTA
1 ATGATTAGTAATAATGAAATT
46285 ATGATTAGTAATAATGAAATT
1 ATGATTAGTAATAATGAAATT
* * **
46306 ATTATTAATTTTTAATG--ATT
1 ATGATT-AGTAATAATGAAATT
* ** * *
46326 -TGA-TAGTAATGATTTAGTA
1 ATGATTAGTAATAATGAAATT
46345 ATGATTAGTAATAATGAAATT
1 ATGATTAGTAATAATGAAATT
* * **
46366 ATTATTAATTTTTAAT--AATT
1 ATGATT-AGTAATAATGAAATT
* ** * *
46386 -TGA-TAGTAATGATTTAGTA
1 ATGATTAGTAATAATGAAATT
46405 ATGATTAGTAATAATGAAATT
1 ATGATTAGTAATAATGAAATT
* * **
46426 ATTATTAATTTTTAATG--ATT
1 ATGATT-AGTAATAATGAAATT
* *
46446 -TGA-TAGTAATGAT--TATT
1 ATGATTAGTAATAATGAAATT
46463 AATGATTAGTAATAATGAAATT
1 -ATGATTAGTAATAATGAAATT
*
46485 ATTATTA
1 ATGATTA
46492 ATTTTTAATA
Statistics
Matches: 164, Mismatches: 60, Indels: 44
0.61 0.22 0.16
Matches are distributed among these distances:
17 24 0.15
18 4 0.02
19 15 0.09
20 31 0.19
21 60 0.37
22 30 0.18
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (21 bp):
ATGATTAGTAATAATGAAATT
Found at i:46252 original size:60 final size:60
Alignment explanation
Indices: 46101--46524 Score: 764
Period size: 60 Copynumber: 7.1 Consensus size: 60
46091 AATGATTTGA
*
46101 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGA-T
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
* *
46160 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATATTAATGATT
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
*
46220 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATAATT
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
46280 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
*
46340 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGATAGTAATGATT
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
46400 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA-T
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
* *
46459 TATTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGATAGTAATGA-T
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
46518 TAGTAAT
1 TAGTAAT
46525 AATGAAATTA
Statistics
Matches: 354, Mismatches: 10, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
59 121 0.34
60 233 0.66
ACGTcount: A:0.42, C:0.00, G:0.12, T:0.46
Consensus pattern (60 bp):
TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
Found at i:46336 original size:120 final size:119
Alignment explanation
Indices: 46101--46686 Score: 919
Period size: 120 Copynumber: 5.1 Consensus size: 119
46091 AATGATTTGA
*
46101 TAGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATTAGTAA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTAGTAA
*
46166 TGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATATTAATGATT
66 TGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
*
46220 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATAATTTAGTA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA-TTAGTA
*
46285 ATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
65 ATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
*
46340 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGATAGTAATGATTTAGTA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA-TTAGTA
*
46405 ATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA-T
65 ATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
*
46459 TATTAATGATTAGTAATAATGAAATTATTATTAATTTTTAAT-A----AT--T--TGA-TAGTAA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTAGTAA
*
46514 TGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATT
66 TGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
46568 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTAG---
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTAGTAA
*
46630 T-A--A-TAATAAT----TTATTATTAATATTTAATGATTTGATATTAATGATT
66 TGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
46676 TAGTAATGATT
1 TAGTAATGATT
46687 TGATAGTAAT
Statistics
Matches: 445, Mismatches: 10, Indels: 35
0.91 0.02 0.07
Matches are distributed among these distances:
108 103 0.23
109 42 0.09
110 4 0.01
112 8 0.02
113 1 0.00
114 4 0.01
115 1 0.00
116 2 0.00
118 4 0.01
119 101 0.23
120 175 0.39
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (119 bp):
TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTAGTAA
TGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATT
Found at i:46345 original size:11 final size:10
Alignment explanation
Indices: 46329--46416 Score: 56
Period size: 10 Copynumber: 8.7 Consensus size: 10
46319 AATGATTTGA
46329 TAGTAATGATT
1 TAGTAATGA-T
46340 TAGTAATGAT
1 TAGTAATGAT
*
46350 TAGTAAT-AA
1 TAGTAATGAT
* *
46359 T-GAAATTAT
1 TAGTAATGAT
* **
46368 TATTAATTTT
1 TAGTAATGAT
*
46378 TAATAATTTGA-
1 TAGTAA--TGAT
46389 TAGTAATGATT
1 TAGTAATGA-T
46400 TAGTAATGAT
1 TAGTAATGAT
46410 TAGTAAT
1 TAGTAAT
46417 AATGAAATTA
Statistics
Matches: 61, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
8 4 0.07
9 7 0.11
10 26 0.43
11 23 0.38
12 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (10 bp):
TAGTAATGAT
Found at i:46525 original size:108 final size:109
Alignment explanation
Indices: 46400--46686 Score: 515
Period size: 108 Copynumber: 2.7 Consensus size: 109
46390 AGTAATGATT
*
46400 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGA-TTATTA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTA
46464 ATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGA
66 ATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGA
46508 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTA
*
46573 ATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGA
66 ATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGA
* * *
46617 TAGTAATGATTAGTAATAAT-AATTTATTATTAATATTTAATGATTTGATATTAATGATTTAGTA
1 TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTA
46681 ATGATT
66 ATGATT
46687 TGATAGTAAT
Statistics
Matches: 173, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
108 105 0.61
109 68 0.39
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (109 bp):
TAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTA
ATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGA
Found at i:46657 original size:21 final size:22
Alignment explanation
Indices: 46633--46702 Score: 63
Period size: 25 Copynumber: 3.1 Consensus size: 22
46623 TGATTAGTAA
46633 TAATAATTT-ATTATTAAT-ATT
1 TAATAATTTGA-TATTAATGATT
*
46654 TAATGATTTGATATTAATGATTT
1 TAATAATTTGATATTAATGA-TT
* *
46677 AGTAATGATTTGATAGTAATGATT
1 --TAATAATTTGATATTAATGATT
46701 TA
1 TA
46703 CGACTTGAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
21 15 0.36
22 4 0.10
23 2 0.05
24 2 0.05
25 19 0.45
ACGTcount: A:0.39, C:0.00, G:0.11, T:0.50
Consensus pattern (22 bp):
TAATAATTTGATATTAATGATT
Found at i:46660 original size:48 final size:49
Alignment explanation
Indices: 46462--46682 Score: 273
Period size: 49 Copynumber: 4.3 Consensus size: 49
46452 TAATGATTAT
* *
46462 TAATGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGATAG
1 TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAG
*
46511 TAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAG
1 TAATGATTAGTAATAATGAAATTATTATTAATATTT-A--A--TGAT--T--TGA--TAG
*
46571 TAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAG
1 TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAG
* *
46620 TAATGATTAGTAATAAT-AATTTATTATTAATATTTAATGATTTGATAT
1 TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAG
46668 TAATGATTTAGTAAT
1 TAATGA-TTAGTAAT
46683 GATTTGATAG
Statistics
Matches: 156, Mismatches: 4, Indels: 24
0.85 0.02 0.13
Matches are distributed among these distances:
48 34 0.22
49 64 0.41
50 1 0.01
51 3 0.02
52 1 0.01
53 1 0.01
54 3 0.02
55 4 0.03
56 1 0.01
57 1 0.01
58 3 0.02
59 1 0.01
60 39 0.25
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (49 bp):
TAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAG
Found at i:46670 original size:14 final size:14
Alignment explanation
Indices: 46654--46701 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
46644 TATTAATATT
*
46654 TAATGATTTGATAT
1 TAATGATTTGATAG
46668 TAATGA-TT--TAG
1 TAATGATTTGATAG
46679 TAATGATTTGATAG
1 TAATGATTTGATAG
46693 TAATGATTT
1 TAATGATTT
46702 ACGACTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
11 8 0.27
12 2 0.07
13 2 0.07
14 18 0.60
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (14 bp):
TAATGATTTGATAG
Found at i:46682 original size:168 final size:168
Alignment explanation
Indices: 46048--46686 Score: 928
Period size: 168 Copynumber: 3.7 Consensus size: 168
46038 GTATTTATAA
* *
46048 GATTTAGTAATGATTAGTAATGATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATTA
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTA
46113 GTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATTAGTAATGATTAGTAATA
66 GTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATTAGTAATGATTAGTAATA
* *
46178 ATGAAATTATTATTAATATTTAATGATTTGATATTAAT
131 ATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
46216 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATAATTT
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGA-TT--T-G-----A--T
*
46281 AGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTTAGTAA
55 AGTAATGATTAGTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGA-TTAGTAA
*
46346 TGATTAGTAATAATGAAATTATTATTAATTTTTAATAATTTGATAGTAAT
119 TGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
46396 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTA
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTA
* * * * * * * * * *
46461 TTAATGATTAGTAATAATGAAATTATTA-TTAAT-TTTTAATAAT-TTGA-TAGTAATGATTAGT
66 GTAAT-AAT-GAAATTAT--TATTAATATTTAATGATTTGATAGTAATGATTAGTAATGATTAGT
46522 AATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
127 AATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
46564 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTA
1 GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTA
* *
46629 GTAATAAT-AATTTATTATTAATATTTAATGATTTGATATTAATGATTTAGTAATGATT
66 GTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGA-TTAGTAATGATT
46687 TGATAGTAAT
Statistics
Matches: 421, Mismatches: 29, Indels: 42
0.86 0.06 0.09
Matches are distributed among these distances:
163 6 0.01
164 5 0.01
165 11 0.03
166 3 0.01
167 2 0.00
168 181 0.43
169 18 0.04
170 5 0.01
171 15 0.04
172 6 0.01
173 5 0.01
176 1 0.00
177 2 0.00
179 59 0.14
180 102 0.24
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (168 bp):
GATTTAGTAATGATTAGTAATAATGAAATTATTATTAATTTTTAATGATTTGATAGTAATGATTA
GTAATAATGAAATTATTATTAATATTTAATGATTTGATAGTAATGATTAGTAATGATTAGTAATA
ATGAAATTATTATTAATTTTTAATGATTTGATAGTAAT
Found at i:49041 original size:30 final size:30
Alignment explanation
Indices: 49007--49110 Score: 124
Period size: 30 Copynumber: 3.4 Consensus size: 30
48997 TCCCTTAAAC
*
49007 AACTAATAAACTATTCTTTAATATAACGTT-
1 AACTAATAAACTATTCTTTAATATAA-ATTA
49037 AACTAATAAACTATTCTTTAATATAAATTA
1 AACTAATAAACTATTCTTTAATATAAATTA
*
49067 AACTAATAAA-TGATT-TTTAATTATAATTTA
1 AACTAATAAACT-ATTCTTTAA-TATAAATTA
*
49097 ATACTAAAAAACTA
1 A-ACTAATAAACTA
49111 ATTAACTAAT
Statistics
Matches: 66, Mismatches: 3, Indels: 9
0.85 0.04 0.12
Matches are distributed among these distances:
29 8 0.12
30 48 0.73
31 9 0.14
32 1 0.02
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (30 bp):
AACTAATAAACTATTCTTTAATATAAATTA
Found at i:49408 original size:18 final size:18
Alignment explanation
Indices: 49355--49409 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
49345 TTGTTTTACC
*
49355 CTAATTTATAATAATAAA
1 CTAATTTATAACAATAAA
49373 CTAA--T-TAAC--T-AA
1 CTAATTTATAACAATAAA
49385 -TAATTTATAACAATAAA
1 CTAATTTATAACAATAAA
49402 CTAATTTA
1 CTAATTTA
49410 AATAATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 14
0.66 0.02 0.32
Matches are distributed among these distances:
11 3 0.10
12 2 0.07
13 2 0.07
14 4 0.14
15 3 0.10
16 2 0.07
17 2 0.07
18 11 0.38
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (18 bp):
CTAATTTATAACAATAAA
Found at i:49471 original size:34 final size:36
Alignment explanation
Indices: 49424--49501 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 36
49414 ATTATTCTTT
*
49424 TATATAACTT-AA-ACTAATAAACT-ATTTTTTATTA
1 TATA-AACTTAAACACTAATAAACTAATTTTTTATAA
49458 TAATAAACTTAAACTACTAATAAACTAATTTTTTATAA
1 T-ATAAACTTAAAC-ACTAATAAACTAATTTTTTATAA
49496 TATAAA
1 TATAAA
49502 TTCACAACCA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
34 6 0.16
35 5 0.13
37 16 0.42
38 11 0.29
ACGTcount: A:0.49, C:0.09, G:0.00, T:0.42
Consensus pattern (36 bp):
TATAAACTTAAACACTAATAAACTAATTTTTTATAA
Found at i:49556 original size:27 final size:29
Alignment explanation
Indices: 49521--49585 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
49511 AAAATATAAC
*
49521 TTAACTATTTA-ACTAACT-ACAAACTAA
1 TTAAATATTTAGACTAACTAACAAACTAA
*
49548 TTAAATA-TTAGACTAACTAACACACTAA
1 TTAAATATTTAGACTAACTAACAAACTAA
*
49576 TTAATTATTT
1 TTAAATATTT
49586 TTTTAATATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 3 0.09
27 13 0.41
28 14 0.44
29 2 0.06
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (29 bp):
TTAAATATTTAGACTAACTAACAAACTAA
Found at i:49699 original size:9 final size:9
Alignment explanation
Indices: 49667--49704 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
49657 CTAACAAACT
49667 AATAATTTAA
1 AATAA-TTAA
49677 AATAA-TAA
1 AATAATTAA
*
49685 ACTAATTAA
1 AATAATTAA
49694 AATAATTAA
1 AATAATTAA
49703 AA
1 AA
49705 AAAACTTACC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.28
9 13 0.52
10 5 0.20
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (9 bp):
AATAATTAA
Found at i:49791 original size:26 final size:25
Alignment explanation
Indices: 49731--49791 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 25
49721 TTGTGCTCTC
*
49731 CCCTTTCTTCTTCCTCCTCTTTTCT
1 CCCTTTCTTCTTCCTCCTATTTTCT
* * * *
49756 CTGCTATCTTCTTCTTTGCTATTTTCT
1 C-CCTTTCTTCTTC-CTCCTATTTTCT
49783 CCCTTTCTT
1 CCCTTTCTT
49792 TCTCTCTTAA
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
25 1 0.04
26 16 0.59
27 10 0.37
ACGTcount: A:0.03, C:0.36, G:0.03, T:0.57
Consensus pattern (25 bp):
CCCTTTCTTCTTCCTCCTATTTTCT
Found at i:49906 original size:12 final size:11
Alignment explanation
Indices: 49879--49913 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
49869 TCACGGGCTA
49879 CAATAATGCAG
1 CAATAATGCAG
*
49890 CAATAAGTGCTG
1 CAATAA-TGCAG
49902 CAATAATGCAG
1 CAATAATGCAG
49913 C
1 C
49914 TGATTTCACG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (11 bp):
CAATAATGCAG
Found at i:50020 original size:29 final size:28
Alignment explanation
Indices: 49973--50056 Score: 123
Period size: 29 Copynumber: 2.9 Consensus size: 28
49963 AAAGGCATAG
*
49973 GTCGTTGGGATCCCTTGGCGACCTACAAT
1 GTCGCTGGGATCCC-TGGCGACCTACAAT
50002 GTCGCTGGGATGCCCTGGCGACCTACAAT
1 GTCGCTGGGAT-CCCTGGCGACCTACAAT
*
50031 GTTGCTGGGATTCCCTGGCGACCTAC
1 GTCGCTGGGA-TCCCTGGCGACCTAC
50057 CCACGTTGCA
Statistics
Matches: 51, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
29 47 0.92
30 4 0.08
ACGTcount: A:0.15, C:0.30, G:0.30, T:0.25
Consensus pattern (28 bp):
GTCGCTGGGATCCCTGGCGACCTACAAT
Found at i:50267 original size:23 final size:23
Alignment explanation
Indices: 50237--50283 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
50227 ATGGCCATGT
50237 CTAAACCACCAACATTGTTCAGG
1 CTAAACCACCAACATTGTTCAGG
50260 CTAAACCACCAACATTGTTCAGG
1 CTAAACCACCAACATTGTTCAGG
50283 C
1 C
50284 CAAGCATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.32, G:0.13, T:0.21
Consensus pattern (23 bp):
CTAAACCACCAACATTGTTCAGG
Found at i:50358 original size:29 final size:29
Alignment explanation
Indices: 50321--50376 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
50311 GCGACCTACC
50321 TAGGTCGCTGGGCGTGCATGGCGACCTGG
1 TAGGTCGCTGGGCGTGCATGGCGACCTGG
50350 TAGGTCGCTGGGCGTGCATGGCGACCT
1 TAGGTCGCTGGGCGTGCATGGCGACCT
50377 ACCCCCGGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.11, C:0.25, G:0.43, T:0.21
Consensus pattern (29 bp):
TAGGTCGCTGGGCGTGCATGGCGACCTGG
Found at i:51660 original size:10 final size:10
Alignment explanation
Indices: 51621--51660 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
51611 TTCATCACAC
51621 CAAATTCTCT
1 CAAATTCTCT
*
51631 CAATTTCTCT
1 CAAATTCTCT
*
51641 CAACTTCTCT
1 CAAATTCTCT
*
51651 CAAATACTCT
1 CAAATTCTCT
51661 TATAATCTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.40
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:51718 original size:9 final size:9
Alignment explanation
Indices: 51706--51757 Score: 56
Period size: 9 Copynumber: 6.1 Consensus size: 9
51696 TAATATTTTG
51706 TATTTAATT
1 TATTTAATT
*
51715 TATTTAA-G
1 TATTTAATT
51723 TATTTAATT
1 TATTTAATT
51732 TATTTAA--
1 TATTTAATT
* *
51739 TATTTTACT
1 TATTTAATT
51748 TATTTAATT
1 TATTTAATT
51757 T
1 T
51758 TTTGCAGTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
7 6 0.17
8 7 0.20
9 22 0.63
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (9 bp):
TATTTAATT
Found at i:51727 original size:17 final size:17
Alignment explanation
Indices: 51705--51754 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
51695 TTAATATTTT
51705 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
51722 GTATTTAATTTATTTAA
1 GTATTTAATTTATTTAA
* *
51739 -TATTTTACTTATTTAA
1 GTATTTAATTTATTTAA
51755 TTTTTTGCAG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.34, C:0.02, G:0.04, T:0.60
Consensus pattern (17 bp):
GTATTTAATTTATTTAA
Found at i:51750 original size:16 final size:16
Alignment explanation
Indices: 51714--51759 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
51704 TGTATTTAAT
* *
51714 TTATTTAAGTATTTAAT
1 TTATTTAA-TATTTTAC
51731 TTATTTAATATTTTAC
1 TTATTTAATATTTTAC
51747 TTATTTAAT-TTTT
1 TTATTTAATATTTT
51760 TGCAGTTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 4 0.15
16 15 0.56
17 8 0.30
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TTATTTAATATTTTAC
Found at i:53756 original size:3 final size:3
Alignment explanation
Indices: 53748--53797 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
53738 ACCTACTTAG
* * * * *
53748 GAC GAC GAC GAC GAC GAT GAT GAC GAC GAC GAC GAC TAC TAC TAC GAC
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC
53796 GA
1 GA
53798 TGATGATGGT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.34, C:0.28, G:0.28, T:0.10
Consensus pattern (3 bp):
GAC
Found at i:54077 original size:35 final size:33
Alignment explanation
Indices: 54037--54121 Score: 82
Period size: 35 Copynumber: 2.5 Consensus size: 33
54027 GTATTTCAGT
*
54037 TAATTTTGTT-TATTATCATTTAATATCAGTTATTG
1 TAATTTTGTTATATTACCATTTAATA-C--TTATTG
*
54072 TAATTTGGTTATCATTTACCATTTAATACTTATTG
1 TAATTTTGTTAT-A-TTACCATTTAATACTTATTG
* *
54107 TAAGTTTGTTGTATT
1 TAATTTTGTTATATT
54122 TAAAATTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
33 2 0.05
34 1 0.02
35 24 0.57
36 1 0.02
37 2 0.05
38 12 0.29
ACGTcount: A:0.27, C:0.07, G:0.11, T:0.55
Consensus pattern (33 bp):
TAATTTTGTTATATTACCATTTAATACTTATTG
Found at i:63962 original size:24 final size:24
Alignment explanation
Indices: 63931--63977 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
63921 TAGATCAATT
63931 GAGTAAATCAAAATAATGGAATAG
1 GAGTAAATCAAAATAATGGAATAG
63955 GAGTAAATCAAAATAATGGAATA
1 GAGTAAATCAAAATAATGGAATA
63978 ATCAAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.19, T:0.21
Consensus pattern (24 bp):
GAGTAAATCAAAATAATGGAATAG
Found at i:65424 original size:44 final size:44
Alignment explanation
Indices: 65336--65432 Score: 131
Period size: 44 Copynumber: 2.2 Consensus size: 44
65326 CGACTCAACG
* **
65336 GTATCGATATTGTCCAGGGAGTATCGATACTACTATGCGCAGTA
1 GTATCGATATCGTCCAGGGAGTATCGATACTACTATGCAAAGTA
* * * *
65380 GTATTGATATCGTCTAGTGAGTATCGATACTACTATGTAAAGTA
1 GTATCGATATCGTCCAGGGAGTATCGATACTACTATGCAAAGTA
65424 GTATCGATA
1 GTATCGATA
65433 CCAAACATGG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (44 bp):
GTATCGATATCGTCCAGGGAGTATCGATACTACTATGCAAAGTA
Found at i:67992 original size:13 final size:13
Alignment explanation
Indices: 67974--68062 Score: 97
Period size: 13 Copynumber: 6.3 Consensus size: 13
67964 GTCACAACCC
67974 GACCCGACCCGTT
1 GACCCGACCCGTT
67987 GACCCGACCCGTT
1 GACCCGACCCGTT
*
68000 TACCCGACCCGTT
1 GACCCGACCCGTT
68013 GACCCGACCCGACCCGTT
1 -----GACCCGACCCGTT
68031 GACCCGACCCGTT
1 GACCCGACCCGTT
*
68044 GACCATTGACCCGTT
1 GACC--CGACCCGTT
68059 GACC
1 GACC
68063 GTTGACCGGA
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
13 42 0.64
15 12 0.18
18 12 0.18
ACGTcount: A:0.17, C:0.45, G:0.21, T:0.17
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:67993 original size:18 final size:18
Alignment explanation
Indices: 67970--68041 Score: 72
Period size: 18 Copynumber: 3.6 Consensus size: 18
67960 ACCGGTCACA
67970 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
67988 ACCCGACCCGTTTACCCGACCCGTTG
1 ACCCGACCCG---A-----CCCGTTG
68014 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
68032 ACCCGACCCG
1 ACCCGACCCG
68042 TTGACCATTG
Statistics
Matches: 46, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
18 27 0.59
21 1 0.02
23 1 0.02
26 17 0.37
ACGTcount: A:0.17, C:0.50, G:0.21, T:0.12
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:68006 original size:31 final size:28
Alignment explanation
Indices: 67970--68041 Score: 81
Period size: 31 Copynumber: 2.4 Consensus size: 28
67960 ACCGGTCACA
*
67970 ACCCGACCCGACCCGTTGACCCGACCCGTTT
1 ACCCGACCCGACCC---GACCCGACCCGTTG
68001 ACCCGACCCGTTGACCCGACCCGACCCGTTG
1 ACCCGACCC---GACCCGACCCGACCCGTTG
68032 ACCCGACCCG
1 ACCCGACCCG
68042 TTGACCATTG
Statistics
Matches: 37, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
28 1 0.03
31 31 0.84
34 5 0.14
ACGTcount: A:0.17, C:0.50, G:0.21, T:0.12
Consensus pattern (28 bp):
ACCCGACCCGACCCGACCCGACCCGTTG
Found at i:68042 original size:31 final size:31
Alignment explanation
Indices: 67987--68047 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
67977 CCGACCCGTT
*
67987 GACCCGACCCGTTTACCCGACCCGTTGACCC
1 GACCCGACCCGTTGACCCGACCCGTTGACCC
68018 GACCCGACCCGTTGACCCGACCCGTTGACC
1 GACCCGACCCGTTGACCCGACCCGTTGACC
68048 ATTGACCCGT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.16, C:0.48, G:0.21, T:0.15
Consensus pattern (31 bp):
GACCCGACCCGTTGACCCGACCCGTTGACCC
Found at i:68056 original size:15 final size:14
Alignment explanation
Indices: 68023--68069 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
68013 GACCCGACCC
*
68023 GACCCGTTGACC-C
1 GACCCGTTGACCTT
68036 GACCCGTTGACCATT
1 GACCCGTTGACC-TT
68051 GACCCGTTGACCGTT
1 GACCCGTTGACC-TT
68066 GACC
1 GACC
68070 GGAGTTGACC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 12 0.40
15 18 0.60
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.21
Consensus pattern (14 bp):
GACCCGTTGACCTT
Found at i:70628 original size:24 final size:24
Alignment explanation
Indices: 70532--70640 Score: 103
Period size: 24 Copynumber: 4.5 Consensus size: 24
70522 GAATATTTTA
* *
70532 TCTGATTTCTGATTTGAATTCTGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
70556 TTTGACATCTGATCTGAAATCTGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
70580 TCTGAT-TCCTAACCTGGATTCTGT
1 TCTGATAT-CTGATCTGAATTCTGT
*
70604 TCTGATATCTGATCTGAATTATGT
1 TCTGATATCTGATCTGAATTCTGT
* *
70628 TTTGATTTCTGAT
1 TCTGATATCTGAT
70641 ATCTCCGTTT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
23 1 0.02
24 64 0.97
25 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.17, T:0.48
Consensus pattern (24 bp):
TCTGATATCTGATCTGAATTCTGT
Found at i:72803 original size:13 final size:13
Alignment explanation
Indices: 72785--72873 Score: 88
Period size: 13 Copynumber: 6.3 Consensus size: 13
72775 GTCACAACCC
72785 GACCCGACCCGTT
1 GACCCGACCCGTT
72798 GACCCGACCCGTT
1 GACCCGACCCGTT
* *
72811 TACCCAACCCGTT
1 GACCCGACCCGTT
72824 GACCCGACCCGACCCGTT
1 -----GACCCGACCCGTT
72842 GACCCGACCCGTT
1 GACCCGACCCGTT
*
72855 GACCATTGACCCGTT
1 GACC--CGACCCGTT
72870 GACC
1 GACC
72874 GTTGACCGGA
Statistics
Matches: 64, Mismatches: 5, Indels: 12
0.79 0.06 0.15
Matches are distributed among these distances:
13 41 0.64
15 12 0.19
18 11 0.17
ACGTcount: A:0.18, C:0.45, G:0.20, T:0.17
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:72804 original size:18 final size:18
Alignment explanation
Indices: 72781--72852 Score: 72
Period size: 18 Copynumber: 3.6 Consensus size: 18
72771 ACCGGTCACA
72781 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
72799 ACCCGACCCGTTTACCCAACCCGTTG
1 ACCCGACCCG-------A-CCCGTTG
72825 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
72843 ACCCGACCCG
1 ACCCGACCCG
72853 TTGACCATTG
Statistics
Matches: 46, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
18 27 0.59
19 1 0.02
25 1 0.02
26 17 0.37
ACGTcount: A:0.18, C:0.50, G:0.19, T:0.12
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:72833 original size:31 final size:31
Alignment explanation
Indices: 72798--72858 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
72788 CCGACCCGTT
*
72798 GACCCGACCCGTTTACCCAACCCGTTGACCC
1 GACCCGACCCGTTGACCCAACCCGTTGACCC
*
72829 GACCCGACCCGTTGACCCGACCCGTTGACC
1 GACCCGACCCGTTGACCCAACCCGTTGACC
72859 ATTGACCCGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.18, C:0.48, G:0.20, T:0.15
Consensus pattern (31 bp):
GACCCGACCCGTTGACCCAACCCGTTGACCC
Found at i:72845 original size:8 final size:8
Alignment explanation
Indices: 72834--72880 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
72824 GACCCGACCC
72834 GACCCGTT
1 GACCCGTT
72842 GACCC---
1 GACCCGTT
72847 GACCCGTT
1 GACCCGTT
*
72855 GA-CCATT
1 GACCCGTT
72862 GACCCGTT
1 GACCCGTT
72870 GA-CCGTT
1 GACCCGTT
72877 GACC
1 GACC
72881 GGAGTTGACC
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
5 5 0.16
7 13 0.41
8 14 0.44
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.21
Consensus pattern (8 bp):
GACCCGTT
Found at i:72867 original size:15 final size:14
Alignment explanation
Indices: 72834--72880 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
72824 GACCCGACCC
*
72834 GACCCGTTGACC-C
1 GACCCGTTGACCTT
72847 GACCCGTTGACCATT
1 GACCCGTTGACC-TT
72862 GACCCGTTGACCGTT
1 GACCCGTTGACC-TT
72877 GACC
1 GACC
72881 GGAGTTGACC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 12 0.40
15 18 0.60
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.21
Consensus pattern (14 bp):
GACCCGTTGACCTT
Found at i:75437 original size:24 final size:24
Alignment explanation
Indices: 75341--75449 Score: 103
Period size: 24 Copynumber: 4.5 Consensus size: 24
75331 GAATATTTTA
* *
75341 TCTGATTTCTGATTTGAATTCTGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
75365 TTTGACATCTGATCTGAAATCTGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
75389 TCTGAT-TCCTAACCTGGATTCTGT
1 TCTGATAT-CTGATCTGAATTCTGT
*
75413 TCTGATATCTGATCTGAATTATGT
1 TCTGATATCTGATCTGAATTCTGT
* *
75437 TTTGATTTCTGAT
1 TCTGATATCTGAT
75450 ATCTCCGTTT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
23 1 0.02
24 64 0.97
25 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.17, T:0.48
Consensus pattern (24 bp):
TCTGATATCTGATCTGAATTCTGT
Found at i:77606 original size:13 final size:13
Alignment explanation
Indices: 77588--77676 Score: 97
Period size: 13 Copynumber: 6.3 Consensus size: 13
77578 GTCACAACCC
77588 GACCCGACCCGTT
1 GACCCGACCCGTT
77601 GACCCGACCCGTT
1 GACCCGACCCGTT
*
77614 TACCCGACCCGTTGACT
1 GACCCGACCCG-T---T
77631 CGACCCGACCCGTT
1 -GACCCGACCCGTT
77645 GACCCGACCCGTT
1 GACCCGACCCGTT
*
77658 GACCATTGACCCGTT
1 GACC--CGACCCGTT
77673 GACC
1 GACC
77677 GTTGACCGGA
Statistics
Matches: 66, Mismatches: 3, Indels: 12
0.81 0.04 0.15
Matches are distributed among these distances:
13 40 0.61
14 2 0.03
15 12 0.18
17 2 0.03
18 10 0.15
ACGTcount: A:0.17, C:0.44, G:0.21, T:0.18
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:77607 original size:18 final size:18
Alignment explanation
Indices: 77584--77655 Score: 63
Period size: 18 Copynumber: 3.6 Consensus size: 18
77574 ACCGGTCACA
77584 ACCCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
77602 ACCCGACCCGTTTACCCGACCCGTTG
1 ACCCGACCCG---A-----CCCGTTG
*
77628 ACTCGACCCGACCCGTTG
1 ACCCGACCCGACCCGTTG
77646 ACCCGACCCG
1 ACCCGACCCG
77656 TTGACCATTG
Statistics
Matches: 44, Mismatches: 2, Indels: 16
0.71 0.03 0.26
Matches are distributed among these distances:
18 26 0.59
21 1 0.02
23 1 0.02
26 16 0.36
ACGTcount: A:0.17, C:0.49, G:0.21, T:0.14
Consensus pattern (18 bp):
ACCCGACCCGACCCGTTG
Found at i:77620 original size:31 final size:31
Alignment explanation
Indices: 77584--77656 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
77574 ACCGGTCACA
* * *
77584 ACCCGACCCG-ACCCGTTGACCCGACCCGTTT
1 ACCCGACCCGTACAC-TCGACCCGACCCGTTG
**
77615 ACCCGACCCGTTGACTCGACCCGACCCGTTG
1 ACCCGACCCGTACACTCGACCCGACCCGTTG
77646 ACCCGACCCGT
1 ACCCGACCCGT
77657 TGACCATTGA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 35 0.97
32 1 0.03
ACGTcount: A:0.16, C:0.48, G:0.21, T:0.15
Consensus pattern (31 bp):
ACCCGACCCGTACACTCGACCCGACCCGTTG
Found at i:77650 original size:8 final size:8
Alignment explanation
Indices: 77637--77683 Score: 50
Period size: 8 Copynumber: 6.5 Consensus size: 8
77627 GACTCGACCC
77637 GACCCGTT
1 GACCCGTT
77645 GACCC---
1 GACCCGTT
77650 GACCCGTT
1 GACCCGTT
*
77658 GA-CCATT
1 GACCCGTT
77665 GACCCGTT
1 GACCCGTT
77673 GA-CCGTT
1 GACCCGTT
77680 GACC
1 GACC
77684 GGAGTTGACC
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
5 5 0.16
7 13 0.41
8 14 0.44
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.21
Consensus pattern (8 bp):
GACCCGTT
Found at i:77650 original size:44 final size:45
Alignment explanation
Indices: 77587--77675 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 45
77577 GGTCACAACC
*
77587 CGACCCGACCCGTTGACCCGACCCGTTTACC-CGACCCGTTGACT
1 CGACCCGACCCGTTGACCCGACCCGTTGACCACGACCCGTTGACT
*
77631 CGACCCGACCCGTTGACCCGACCCGTTGACCATTGACCCGTTGAC
1 CGACCCGACCCGTTGACCCGACCCGTTGACCA-CGACCCGTTGAC
77676 CGTTGACCGG
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 30 0.73
46 11 0.27
ACGTcount: A:0.17, C:0.44, G:0.21, T:0.18
Consensus pattern (45 bp):
CGACCCGACCCGTTGACCCGACCCGTTGACCACGACCCGTTGACT
Found at i:77657 original size:31 final size:31
Alignment explanation
Indices: 77601--77660 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
77591 CCGACCCGTT
*
77601 GACCCGACCCGTTTACCCGACCCGTTGACTC
1 GACCCGACCCGTTGACCCGACCCGTTGACTC
77632 GACCCGACCCGTTGACCCGACCCGTTGAC
1 GACCCGACCCGTTGACCCGACCCGTTGAC
77661 CATTGACCCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.17, C:0.45, G:0.22, T:0.17
Consensus pattern (31 bp):
GACCCGACCCGTTGACCCGACCCGTTGACTC
Found at i:77670 original size:15 final size:14
Alignment explanation
Indices: 77637--77683 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
77627 GACTCGACCC
*
77637 GACCCGTTGACC-C
1 GACCCGTTGACCTT
77650 GACCCGTTGACCATT
1 GACCCGTTGACC-TT
77665 GACCCGTTGACCGTT
1 GACCCGTTGACC-TT
77680 GACC
1 GACC
77684 GGAGTTGACC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
13 12 0.40
15 18 0.60
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.21
Consensus pattern (14 bp):
GACCCGTTGACCTT
Found at i:80242 original size:24 final size:24
Alignment explanation
Indices: 80146--80254 Score: 103
Period size: 24 Copynumber: 4.5 Consensus size: 24
80136 GAATATTTTA
* *
80146 TCTGATTTCTGATTTGAATTCTGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
80170 TTTGACATCTGATCTGAAATCTGT
1 TCTGATATCTGATCTGAATTCTGT
* * *
80194 TCTGAT-TCCTAACCTGGATTCTGT
1 TCTGATAT-CTGATCTGAATTCTGT
*
80218 TCTGATATCTGATCTGAATTATGT
1 TCTGATATCTGATCTGAATTCTGT
* *
80242 TTTGATTTCTGAT
1 TCTGATATCTGAT
80255 ATCTCCGTTT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
23 1 0.02
24 64 0.97
25 1 0.02
ACGTcount: A:0.20, C:0.16, G:0.17, T:0.48
Consensus pattern (24 bp):
TCTGATATCTGATCTGAATTCTGT
Found at i:82098 original size:21 final size:21
Alignment explanation
Indices: 82073--82179 Score: 112
Period size: 21 Copynumber: 5.2 Consensus size: 21
82063 CGGGGTATGT
82073 ATACTTATTCAAGTAGTATCG
1 ATACTTATTCAAGTAGTATCG
* *
82094 GTACTGTA-TGAA-TAGTATCG
1 ATACT-TATTCAAGTAGTATCG
* *
82114 ATACTCATTCAGGTAGTATCG
1 ATACTTATTCAAGTAGTATCG
* *
82135 ATACTCATTCAGGTAGTATCG
1 ATACTTATTCAAGTAGTATCG
* *
82156 ATAC-TATGCTAGTAGTATCG
1 ATACTTATTCAAGTAGTATCG
82176 ATAC
1 ATAC
82180 CTAGCAAGAG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
19 1 0.01
20 30 0.41
21 40 0.55
22 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (21 bp):
ATACTTATTCAAGTAGTATCG
Found at i:88000 original size:44 final size:44
Alignment explanation
Indices: 87945--88030 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
87935 TATCGACACT
* *
87945 GTCCAGGGAGTATCGACACTATTATGTGCAA-TAGTATCGATATC
1 GTCCAGGGAGTATCGACACTACTATGT-AAAGTAGTATCGATATC
* *
87989 GTCCAGTGAGTATCGATACTACTATGTAAAGTAGTATCGATA
1 GTCCAGGGAGTATCGACACTACTATGTAAAGTAGTATCGATA
88031 CTGAACATGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (44 bp):
GTCCAGGGAGTATCGACACTACTATGTAAAGTAGTATCGATATC
Found at i:93384 original size:2 final size:2
Alignment explanation
Indices: 93379--93416 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
93369 TATCAATAAT
93379 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
93417 AAATCAACTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:93916 original size:12 final size:13
Alignment explanation
Indices: 93871--93917 Score: 53
Period size: 12 Copynumber: 3.6 Consensus size: 13
93861 AACAAATTAA
93871 ATAAAATA-TAAG
1 ATAAAATAGTAAG
*
93883 ATAAAGAAAGTAAAG
1 ATAAA-ATAGT-AAG
93898 ATAAAATAGTAAG
1 ATAAAATAGTAAG
93911 -TAAAATA
1 ATAAAATA
93918 AATATAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 12 0.40
13 5 0.17
14 5 0.17
15 8 0.27
ACGTcount: A:0.66, C:0.00, G:0.13, T:0.21
Consensus pattern (13 bp):
ATAAAATAGTAAG
Found at i:93936 original size:46 final size:48
Alignment explanation
Indices: 93869--94002 Score: 127
Period size: 47 Copynumber: 2.8 Consensus size: 48
93859 AAAACAAATT
* * *
93869 AAATAAAAT-ATAAGATAAAGAAAGTAAAGATAAAATA-GTAAGTAAAAT
1 AAATAAAATAAT-A-ATAAAGAAAGTAAAGATAAAATATATAAATAAAAC
* *
93917 AAATATAAA-AA-AATAAAGAAA-AAGAAGAAAAAATATATAAATAAAAC
1 AAATA-AAATAATAATAAAGAAAGTA-AAGATAAAATATATAAATAAAAC
* *
93964 AAATAAAATAATAATAAA-AAAGTAAAAATAATATATATA
1 AAATAAAATAATAATAAAGAAAGTAAAGATAAAATATATA
94003 TATATATATA
Statistics
Matches: 70, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
45 1 0.01
46 22 0.31
47 31 0.44
48 12 0.17
49 4 0.06
ACGTcount: A:0.72, C:0.01, G:0.07, T:0.20
Consensus pattern (48 bp):
AAATAAAATAATAATAAAGAAAGTAAAGATAAAATATATAAATAAAAC
Found at i:93938 original size:23 final size:23
Alignment explanation
Indices: 93883--93938 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
93873 AAAATATAAG
* *
93883 ATAAAGAAAGTAAAGATAAAATA
1 ATAAAGAAAATAAAGATAAAAAA
* *
93906 GT-AAGTAAAATAAATATAAAAAA
1 ATAAAG-AAAATAAAGATAAAAAA
93929 ATAAAGAAAA
1 ATAAAGAAAA
93939 AGAAGAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
22 3 0.12
23 20 0.77
24 3 0.12
ACGTcount: A:0.71, C:0.00, G:0.11, T:0.18
Consensus pattern (23 bp):
ATAAAGAAAATAAAGATAAAAAA
Found at i:93981 original size:20 final size:20
Alignment explanation
Indices: 93945--94039 Score: 66
Period size: 20 Copynumber: 4.3 Consensus size: 20
93935 AAAAAGAAGA
93945 AAAAATATATAAATAAAACAAAT
1 AAAAATA-AT-AATAAAA-AAAT
*
93968 -AAAATAATAATAAAAAAGT
1 AAAAATAATAATAAAAAAAT
*
93987 AAAAATAATATATATATATATATAT
1 AAAAATAATA-ATA-A-A-A-AAAT
* *
94012 ATATATAATAAATAAAAAAAT
1 AAAAATAAT-AATAAAAAAAT
94033 AAAAATA
1 AAAAATA
94040 GTAAATATAT
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
19 3 0.05
20 16 0.28
21 13 0.23
22 8 0.14
23 2 0.04
24 2 0.04
25 12 0.21
26 1 0.02
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.27
Consensus pattern (20 bp):
AAAAATAATAATAAAAAAAT
Found at i:93999 original size:2 final size:2
Alignment explanation
Indices: 93994--94018 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
93984 AGTAAAAATA
93994 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
94019 ATAAATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:94048 original size:38 final size:38
Alignment explanation
Indices: 94006--94118 Score: 104
Period size: 40 Copynumber: 2.9 Consensus size: 38
93996 ATATATATAT
**
94006 ATATATATATATAATAAATAAAAAAATAAAAATAGTAA
1 ATATATATATATAATAAATAAAAAAATAAAAATAAAAA
* * * *
94044 ATATATATATATACA-AATTAATAAAACTGATAATAAAAA
1 ATATATATATATA-ATAAATAA-AAAAATAAAAATAAAAA
*
94083 AAATAATATATATAATCTAAA-AAAAAAATAAAAATA
1 ATAT-ATATATATAA--TAAATAAAAAAATAAAAATA
94119 TATACTAAAG
Statistics
Matches: 58, Mismatches: 11, Indels: 10
0.73 0.14 0.13
Matches are distributed among these distances:
38 18 0.31
39 17 0.29
40 19 0.33
41 2 0.03
42 2 0.03
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (38 bp):
ATATATATATATAATAAATAAAAAAATAAAAATAAAAA
Found at i:95308 original size:39 final size:36
Alignment explanation
Indices: 95254--95344 Score: 119
Period size: 39 Copynumber: 2.4 Consensus size: 36
95244 CGAGGGTTTG
* *
95254 GTGTTTTAAGAGAAACATTTTCAAAGGTTTTTTGTGTGT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTT-T-T-T
* *
95293 GTGTTTCAAGAGAAACAATTTCGAGGGTTTTTTTTT
1 GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTT
95329 GTGTTTCAAGAGAAAC
1 GTGTTTCAAGAGAAAC
95345 TGTCTCAAGA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
36 17 0.35
37 1 0.02
38 1 0.02
39 29 0.60
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (36 bp):
GTGTTTCAAGAGAAACAATTTCAAAGGTTTTTTTTT
Found at i:95372 original size:36 final size:36
Alignment explanation
Indices: 95330--95563 Score: 227
Period size: 36 Copynumber: 6.6 Consensus size: 36
95320 TTTTTTTTTG
*
95330 TGTTTCAAGAGAAACTGTCTCAAGAGGGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
95366 TATTTCAAAAGAAACTGTCTCAAGAGAGACAAAACTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAA-TT
* * * *
95403 AG-TTCTAAAAGAAACTGTCTCAAGGGAGACGAAATT
1 TGTTTC-AAGAGAAACTGTCTCAAGAGAGACAAAATT
* * *
95439 TGTTTCAAG-GAAA-AGATATTC-A-A-AG----ATTT
1 TGTTTCAAGAGAAACTG-T-CTCAAGAGAGACAAAATT
*
95468 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
* *
95504 TGTTTCAAGGGAAACTGTCTCAAGAGAGACAAGATTT
1 TGTTTCAAGAGAAACTGTCTCAAGAGAGACAA-AATT
*
95541 TGTTTCAAGGGAAACTGTCTCAA
1 TGTTTCAAGAGAAACTGTCTCAA
95564 AACTCGTTTT
Statistics
Matches: 166, Mismatches: 17, Indels: 29
0.78 0.08 0.14
Matches are distributed among these distances:
29 14 0.08
30 6 0.04
31 2 0.01
32 2 0.01
33 2 0.01
34 1 0.01
35 6 0.04
36 76 0.46
37 57 0.34
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (36 bp):
TGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATT
Found at i:95677 original size:35 final size:35
Alignment explanation
Indices: 95628--95694 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
95618 TCAAGGTTTA
*
95628 TGTTTCAAGAGAAACTATCTCAAGGGAGACAATTT
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAATTT
*
95663 TGTTTCAAGGGAAACTATCTCAAGAGAGACAA
1 TGTTTCAAGAGAAACTATCTCAAGAGAGACAA
95695 AATTAATTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (35 bp):
TGTTTCAAGAGAAACTATCTCAAGAGAGACAATTT
Found at i:95712 original size:36 final size:35
Alignment explanation
Indices: 95630--95712 Score: 96
Period size: 35 Copynumber: 2.3 Consensus size: 35
95620 AAGGTTTATG
* * **
95630 TTTC-AAGAGAAACTATCTCAAGGGAGACAATTTTG
1 TTTCAAAG-GAAACTATCTCAAGAGAGACAAATTAA
*
95665 TTTCAAGGGAAACTATCTCAAGAGAGACAAAATTAA
1 TTTCAAAGGAAACTATCTCAAGAGAGAC-AAATTAA
95701 TTTCAAAGGAAA
1 TTTCAAAGGAAA
95713 TATTTTCAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
35 23 0.57
36 17 0.43
ACGTcount: A:0.43, C:0.13, G:0.18, T:0.25
Consensus pattern (35 bp):
TTTCAAAGGAAACTATCTCAAGAGAGACAAATTAA
Found at i:95727 original size:100 final size:101
Alignment explanation
Indices: 95601--95838 Score: 361
Period size: 102 Copynumber: 2.4 Consensus size: 101
95591 ATATTTTGTG
* *
95601 TTTCAAGGGAAACATTTTCAAGGTTTATGTTTCAAGAGAAACTATCTCAAGGGAGAC-AATTTTG
1 TTTCAAGGGAAATATTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGGGAGACAAATTTTG
* *
95665 TTTCAAGGGAAACTATCTCAAGAGAGACAAAATTAA
66 TTTCAAGGGAAACTACCCCAAGAGAGACAAAATTAA
* * *
95701 TTTCAAAGGAAATATTTTCAATGTTTATGTTTCAAGAGAAGCTGTCTCAAGGGAGACAAAATTTT
1 TTTCAAGGGAAATATTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGGGAGAC-AAATTTT
* * *
95766 GTTTCAAGGGAAACTACCCCAAGCGAGATAAAATTTA
65 GTTTCAAGGGAAACTACCCCAAGAGAGACAAAATTAA
*
95803 TTTCAAGGGAAATGTTTTCAATGTTTATGTTTCAAG
1 TTTCAAGGGAAATATTTTCAATGTTTATGTTTCAAG
95839 GGAGACAAAA
Statistics
Matches: 124, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
100 52 0.42
102 72 0.58
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (101 bp):
TTTCAAGGGAAATATTTTCAATGTTTATGTTTCAAGAGAAACTATCTCAAGGGAGACAAATTTTG
TTTCAAGGGAAACTACCCCAAGAGAGACAAAATTAA
Found at i:95838 original size:87 final size:87
Alignment explanation
Indices: 95747--96012 Score: 462
Period size: 87 Copynumber: 3.1 Consensus size: 87
95737 AGAAGCTGTC
* * * *
95747 TCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTACCCCAAGCGAGATAAAATTTATTTCAAGGG
1 TCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAATCGAGATAAAATTCATTTCAAGGG
95812 AAATGTTTTCAATGTTTATGTT
66 AAATGTTTTCAATGTTTATGTT
*
95834 TCAAGGGAGACAAAATTTCGTTTCAAGGGAAACTATCTCAATCGAGATAAAATTCATTTCAAGGG
1 TCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAATCGAGATAAAATTCATTTCAAGGG
95899 AAATGTTTTCAATGTTTATGTT
66 AAATGTTTTCAATGTTTATGTT
*
95921 TCAAGGGAGACAAAATTTCT-TTTCAAGGGAAACTATCTCAATCGAGATAAAATTCATTTTAAGG
1 TCAAGGGAGACAAAATTT-TGTTTCAAGGGAAACTATCTCAATCGAGATAAAATTCATTTCAAGG
95985 GAAATGTTTTCAATGTTTATGTT
65 GAAATGTTTTCAATGTTTATGTT
96008 TCAAG
1 TCAAG
96013 AGAAACTGTC
Statistics
Matches: 171, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
87 171 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (87 bp):
TCAAGGGAGACAAAATTTTGTTTCAAGGGAAACTATCTCAATCGAGATAAAATTCATTTCAAGGG
AAATGTTTTCAATGTTTATGTT
Found at i:96581 original size:106 final size:106
Alignment explanation
Indices: 96269--96587 Score: 451
Period size: 106 Copynumber: 3.0 Consensus size: 106
96259 TGTATTGTTC
* * * * * ** *
96269 CGAGTCCAATATCCTCCACCGTGAAGTTAAAATTGGCTCTGGAACTAAGAAATTATTTGTTGACA
1 CGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
* * * * * *
96334 GCCAGCCGCCCCTTCGCTT-TGAAGTTGAGCTTGTGCTGTTT
66 ACCAGCCGTCCCTTCG-TTGTGAATTTGAACTTGTGTTGTCT
* *
96375 CGAGTCCAATATCCTTCACTGTGAAGTTGAAATTAGCTCCGAAATTGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
96440 ACCAGCCGTCCCTTCGTTGTGAATTTGAACTTGTGTTGTCT
66 ACCAGCCGTCCCTTCGTTGTGAATTTGAACTTGTGTTGTCT
*
96481 CGAGTCCAATATCCTTCGCTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
1 CGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
* *
96546 ACCAGTCGTCCCTTCGTTGTGGATTTGAACTTGTGTTGTCT
66 ACCAGCCGTCCCTTCGTTGTGAATTTGAACTTGTGTTGTCT
96587 C
1 C
96588 AAGTGGCACG
Statistics
Matches: 191, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
105 2 0.01
106 189 0.99
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (106 bp):
CGAGTCCAATATCCTTCACTGTGAAGTTGAAATTGGCTCTGAAATTGGGAAATTGTTTGTTGACA
ACCAGCCGTCCCTTCGTTGTGAATTTGAACTTGTGTTGTCT
Found at i:97200 original size:32 final size:32
Alignment explanation
Indices: 97159--97270 Score: 129
Period size: 32 Copynumber: 3.5 Consensus size: 32
97149 TTTGCATTAG
* * *
97159 GATGTTGAAT-TCCCAAAGATGCCCCAATATTC
1 GATGTTGAATCT-CAAAAAATGCCCCAACATTC
*
97191 GATGTTGAATCTCAAAAAATGCCCCAACATTT
1 GATGTTGAATCTCAAAAAATGCCCCAACATTC
* * *
97223 GATGTTAAATCTAAAAAAATG-CCCAACATTT
1 GATGTTGAATCTCAAAAAATGCCCCAACATTC
97254 GATGTTGAATCTTCAAA
1 GATGTTGAATC-TCAAA
97271 GATGCCCTCA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
31 20 0.29
32 49 0.70
33 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (32 bp):
GATGTTGAATCTCAAAAAATGCCCCAACATTC
Found at i:97248 original size:31 final size:32
Alignment explanation
Indices: 97177--97265 Score: 135
Period size: 32 Copynumber: 2.8 Consensus size: 32
97167 ATTCCCAAAG
* * *
97177 ATGCCCCAATATTCGATGTTGAATCTCAAAAA
1 ATGCCCCAACATTTGATGTTGAATCTAAAAAA
*
97209 ATGCCCCAACATTTGATGTTAAATCTAAAAAA
1 ATGCCCCAACATTTGATGTTGAATCTAAAAAA
97241 ATG-CCCAACATTTGATGTTGAATCT
1 ATGCCCCAACATTTGATGTTGAATCT
97266 TCAAAGATGC
Statistics
Matches: 52, Mismatches: 5, Indels: 1
0.90 0.09 0.02
Matches are distributed among these distances:
31 21 0.40
32 31 0.60
ACGTcount: A:0.37, C:0.20, G:0.12, T:0.30
Consensus pattern (32 bp):
ATGCCCCAACATTTGATGTTGAATCTAAAAAA
Found at i:98318 original size:69 final size:69
Alignment explanation
Indices: 98203--98340 Score: 213
Period size: 69 Copynumber: 2.0 Consensus size: 69
98193 TGTCTTTCTC
* *
98203 TTGATGCTCCATGATCTTCGAGTGGAGTGATTCAGTAATTCAGAAATGATTGTGCTTGATCAATC
1 TTGATGCTCCATGATCTTCGAGTGAAGTGATTAAGTAATTCAGAAATGATTGTGCTTGATCAATC
98268 TCAT
66 TCAT
* * * * *
98272 TTGATGCTCTATGATCTTCGAGTGAAGTGGTTAAGTGATTCGGAAATGATTGTGCTTGATCAATT
1 TTGATGCTCCATGATCTTCGAGTGAAGTGATTAAGTAATTCAGAAATGATTGTGCTTGATCAATC
98337 TCAT
66 TCAT
98341 AGTTTGAATC
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.38
Consensus pattern (69 bp):
TTGATGCTCCATGATCTTCGAGTGAAGTGATTAAGTAATTCAGAAATGATTGTGCTTGATCAATC
TCAT
Found at i:98436 original size:14 final size:13
Alignment explanation
Indices: 98414--98463 Score: 50
Period size: 14 Copynumber: 3.8 Consensus size: 13
98404 TTTTCTTCAA
98414 TTTTC-CTTTGTT
1 TTTTCTCTTTGTT
98426 TTTTCATCTTT-TT
1 TTTTC-TCTTTGTT
*
98439 ATTTTCTGTTTGTT
1 -TTTTCTCTTTGTT
98453 TTGTTCTCTTT
1 TT-TTCTCTTT
98464 TTCTCTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
12 5 0.16
13 8 0.26
14 18 0.58
ACGTcount: A:0.04, C:0.14, G:0.08, T:0.74
Consensus pattern (13 bp):
TTTTCTCTTTGTT
Found at i:98442 original size:26 final size:27
Alignment explanation
Indices: 98413--98465 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
98403 TTTTTCTTCA
98413 ATTTTC-CTTTGTTTT-TTCATCTTTTT
1 ATTTTCTCTTTGTTTTGTTC-TCTTTTT
*
98439 ATTTTCTGTTTGTTTTGTTCTCTTTTT
1 ATTTTCTCTTTGTTTTGTTCTCTTTTT
98466 CTCTTTTTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 6 0.25
27 15 0.62
28 3 0.12
ACGTcount: A:0.06, C:0.13, G:0.08, T:0.74
Consensus pattern (27 bp):
ATTTTCTCTTTGTTTTGTTCTCTTTTT
Found at i:101545 original size:15 final size:16
Alignment explanation
Indices: 101516--101549 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
101506 AGTAAAGATA
*
101516 AAATAGTAAATAAAAT
1 AAATAGTAAAAAAAAT
101532 AAATA-TAAAAAAAAT
1 AAATAGTAAAAAAAAT
101547 AAA
1 AAA
101550 AAAATAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
AAATAGTAAAAAAAAT
Found at i:101739 original size:2 final size:2
Alignment explanation
Indices: 101619--101719 Score: 58
Period size: 2 Copynumber: 54.0 Consensus size: 2
101609 GGTAAAAATA
* * * * *
101619 AT AT AT AT AT AT AT AT AT AT A- AT AA AA AA AA AT A- AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
101659 AT AT AT AT AT AT A- AT -T A- AT A- AA ACT A- AT A- AA ACT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A-T AT AT
101696 AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
101720 CTAAAAAATA
Statistics
Matches: 83, Mismatches: 5, Indels: 22
0.75 0.05 0.20
Matches are distributed among these distances:
1 9 0.11
2 72 0.87
3 2 0.02
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (2 bp):
AT
Found at i:101757 original size:24 final size:24
Alignment explanation
Indices: 101721--101777 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
101711 TATATATATC
*
101721 TAAAAAATAAAAATATATACTAAA-G
1 TAAAAAATAAAAATACATA--AAATG
*
101746 TAAAAAA-GAAAATACATAAAATG
1 TAAAAAATAAAAATACATAAAATG
101769 TAAAAAATA
1 TAAAAAATA
101778 TTACATGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
22 3 0.11
23 8 0.30
24 9 0.33
25 7 0.26
ACGTcount: A:0.70, C:0.04, G:0.05, T:0.21
Consensus pattern (24 bp):
TAAAAAATAAAAATACATAAAATG
Found at i:103795 original size:16 final size:16
Alignment explanation
Indices: 103774--103813 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
103764 AACTTTAATT
103774 ATAATTATTT-TAAAAA
1 ATAATT-TTTATAAAAA
103790 ATAATTTTTATAAAAA
1 ATAATTTTTATAAAAA
103806 ATATATTT
1 ATA-ATTT
103814 CAAAACTATT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 3 0.14
16 15 0.68
17 4 0.18
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATAATTTTTATAAAAA
Found at i:107969 original size:24 final size:25
Alignment explanation
Indices: 107942--107990 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
107932 TTATAGTTAG
*
107942 AATGAAGTTGATGTA-TATAAATTA
1 AATGAAGTTAATGTATTATAAATTA
*
107966 AATGAAGTTAATGTATTCTAAATTA
1 AATGAAGTTAATGTATTATAAATTA
107991 TTAAAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.45, C:0.02, G:0.14, T:0.39
Consensus pattern (25 bp):
AATGAAGTTAATGTATTATAAATTA
Found at i:114558 original size:19 final size:19
Alignment explanation
Indices: 114541--114606 Score: 61
Period size: 19 Copynumber: 3.5 Consensus size: 19
114531 TGAAAAGATT
114541 TAATAAAATAAAATAGATAA
1 TAAT-AAATAAAATAGATAA
114561 TAATAAATAAAA-AGGA-AA
1 TAATAAATAAAATA-GATAA
114579 -AAT-AATAAAATA-ATAAAA
1 TAATAAATAAAATAGAT--AA
114597 TAATAAATAA
1 TAATAAATAA
114607 TAGTAGTAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
15 1 0.03
16 7 0.18
17 4 0.10
18 5 0.13
19 13 0.33
20 9 0.23
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (19 bp):
TAATAAATAAAATAGATAA
Found at i:114564 original size:20 final size:21
Alignment explanation
Indices: 114541--114591 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
114531 TGAAAAGATT
*
114541 TAATAAAATAAAATA-G-ATAA
1 TAATAAAATAAAA-AGGAAAAA
114561 TAAT-AAATAAAAAGGAAAAA
1 TAATAAAATAAAAAGGAAAAA
114581 TAATAAAATAA
1 TAATAAAATAA
114592 TAAAATAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
18 1 0.04
19 9 0.33
20 11 0.41
21 6 0.22
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.22
Consensus pattern (21 bp):
TAATAAAATAAAAAGGAAAAA
Found at i:114588 original size:8 final size:8
Alignment explanation
Indices: 114547--114608 Score: 58
Period size: 8 Copynumber: 7.5 Consensus size: 8
114537 GATTTAATAA
114547 AATAAAAT
1 AATAAAAT
114555 AGATAATAAT
1 A-ATAA-AAT
114565 AAATAAAA-
1 -AATAAAAT
114573 AGGA-AAAAT
1 A--ATAAAAT
114582 AATAAAAT
1 AATAAAAT
114590 AATAAAAT
1 AATAAAAT
114598 AAT-AAAT
1 AATAAAAT
114605 AATA
1 AATA
114609 GTAGTAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 16
0.74 0.00 0.26
Matches are distributed among these distances:
7 9 0.20
8 21 0.46
9 8 0.17
10 7 0.15
11 1 0.02
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (8 bp):
AATAAAAT
Found at i:114605 original size:20 final size:20
Alignment explanation
Indices: 114541--114620 Score: 55
Period size: 21 Copynumber: 4.2 Consensus size: 20
114531 TGAAAAGATT
114541 TAATAAAATAAAATAGAT--AA
1 TAAT-AAATAAAATA-ATAAAA
**
114561 TAATAAAT-AAA-AAGGAAA
1 TAATAAATAAAATAATAAAA
114579 -AAT-AATAAAATAATAAAA
1 TAATAAATAAAATAATAAAA
* *
114597 TAATAAATAATAGTAGTAAAA
1 TAATAAATAA-AATAATAAAA
114618 TAA
1 TAA
114621 AAGGGTTTTT
Statistics
Matches: 48, Mismatches: 5, Indels: 13
0.73 0.08 0.20
Matches are distributed among these distances:
16 4 0.08
17 7 0.15
18 10 0.21
19 7 0.15
20 9 0.19
21 11 0.23
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (20 bp):
TAATAAATAAAATAATAAAA
Found at i:115425 original size:25 final size:24
Alignment explanation
Indices: 115378--115501 Score: 63
Period size: 25 Copynumber: 5.0 Consensus size: 24
115368 AAATCCTAAT
** *
115378 TAAAATACTAAAACTTAGTTAAAC
1 TAAAATACTAAAACAAAGATAAAC
*
115402 TAAAATACCTAAAACAAAGATAAAA
1 TAAAATA-CTAAAACAAAGATAAAC
* * * *
115427 TATAAA-AATAATATCCTAAA-ACTTAAT
1 TA-AAATACTAA-A-AC-AAAGA-TAAAC
** **
115454 TAAAATACTAAAACCTATTTAAAC
1 TAAAATACTAAAACAAAGATAAAC
115478 TAAAATACCTAAAACAAAGATAAA
1 TAAAATA-CTAAAACAAAGATAAA
115502 ATATAATGTT
Statistics
Matches: 72, Mismatches: 19, Indels: 17
0.67 0.18 0.16
Matches are distributed among these distances:
24 21 0.29
25 30 0.42
26 9 0.12
27 12 0.17
ACGTcount: A:0.60, C:0.13, G:0.02, T:0.25
Consensus pattern (24 bp):
TAAAATACTAAAACAAAGATAAAC
Found at i:115426 original size:44 final size:42
Alignment explanation
Indices: 115378--115504 Score: 114
Period size: 44 Copynumber: 3.2 Consensus size: 42
115368 AAATCCTAAT
115378 TAAAATACTAAAACTTAGTTAAACTAAAATACCTAAAACAAAGA
1 TAAAATACTAAAAC-TA-TTAAACTAAAATACCTAAAACAAAGA
* *
115422 TAAAATA-TAAAA--A-T-AA-T---AT-CCTAAAACTTAA-T
1 TAAAATACTAAAACTATTAAACTAAAATACCTAAAAC-AAAGA
115454 TAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGA
1 TAAAATACTAAAA-CTA-TTAAACTAAAATACCTAAAACAAAGA
115498 TAAAATA
1 TAAAATA
115505 TAATGTTTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 28
0.67 0.04 0.29
Matches are distributed among these distances:
32 15 0.23
33 9 0.14
36 2 0.03
37 2 0.03
38 2 0.03
39 2 0.03
40 2 0.03
43 9 0.14
44 22 0.34
ACGTcount: A:0.60, C:0.13, G:0.02, T:0.25
Consensus pattern (42 bp):
TAAAATACTAAAACTATTAAACTAAAATACCTAAAACAAAGA
Found at i:115454 original size:76 final size:76
Alignment explanation
Indices: 115296--115507 Score: 292
Period size: 76 Copynumber: 2.9 Consensus size: 76
115286 TAAAACATGT
* * * *
115296 TAAATCCTAATTAAAACACTTAAAA-TTATTTAAACTAAAATACCT--AA-AAA-ATAATAT-TT
1 TAAAACCTAATTAAAATAC-TAAAACTTATTTAAACTAAAATACCTAAAACAAAGATAAAATATA
*
115355 AAAATAATATTC
65 AAAATAATATCC
* *
115367 TAAATCCTAATTAAAATACTAAAACTTAGTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAAAACCTAATTAAAATACTAAAACTTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
115432 AAATAATATCC
66 AAATAATATCC
* *
115443 TAAAACTTAATTAAAATACTAAAACCTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
1 TAAAACCTAATTAAAATACTAAAACTTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
115508 TGTTTAAAAT
Statistics
Matches: 126, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
70 5 0.04
71 37 0.29
73 2 0.02
74 3 0.02
75 6 0.05
76 73 0.58
ACGTcount: A:0.58, C:0.12, G:0.01, T:0.29
Consensus pattern (76 bp):
TAAAACCTAATTAAAATACTAAAACTTATTTAAACTAAAATACCTAAAACAAAGATAAAATATAA
AAATAATATCC
Found at i:122219 original size:24 final size:24
Alignment explanation
Indices: 122132--122226 Score: 102
Period size: 24 Copynumber: 4.0 Consensus size: 24
122122 ATTTTTTATT
* *
122132 TGAATTCTTTTTTGACATCTGATC
1 TGAATTCTGTTTTGATATCTGATC
* * *
122156 TGAAATCTGTTTTGAT-TCCTAACC
1 TGAATTCTGTTTTGATAT-CTGATC
*
122180 TGGATTCTGTTTTGATATCTGATC
1 TGAATTCTGTTTTGATATCTGATC
* *
122204 TGAATTATGTTTTGATTTCTGAT
1 TGAATTCTGTTTTGATATCTGAT
122227 ATCACCGTTT
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
23 1 0.02
24 55 0.96
25 1 0.02
ACGTcount: A:0.21, C:0.14, G:0.16, T:0.49
Consensus pattern (24 bp):
TGAATTCTGTTTTGATATCTGATC
Found at i:123667 original size:18 final size:18
Alignment explanation
Indices: 123646--123681 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
123636 GACCCGACCC
123646 GTTGACCCG-CCCTGTTGA
1 GTTGACCCGACCC-GTTGA
123664 GTTGACCCGACCCGTTGA
1 GTTGACCCGACCCGTTGA
123682 CCGTTGACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.14, C:0.33, G:0.28, T:0.25
Consensus pattern (18 bp):
GTTGACCCGACCCGTTGA
Found at i:130539 original size:25 final size:25
Alignment explanation
Indices: 130509--130561 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
130499 CATACTGATA
130509 AATCATTTTATAAGTTATATGTTTT
1 AATCATTTTATAAGTTATATGTTTT
130534 AATCATTTTATAAGTTATATGTTTT
1 AATCATTTTATAAGTTATATGTTTT
130559 AAT
1 AAT
130562 AAAAGTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.55
Consensus pattern (25 bp):
AATCATTTTATAAGTTATATGTTTT
Found at i:131713 original size:2 final size:2
Alignment explanation
Indices: 131654--131705 Score: 65
Period size: 2 Copynumber: 26.5 Consensus size: 2
131644 ATATGAAAAG
131654 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AGT -T AT AT AT AGT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT A-T AT
131695 AT AT AT AT AT A
1 AT AT AT AT AT A
131706 GTTATATAAG
Statistics
Matches: 45, Mismatches: 0, Indels: 10
0.82 0.00 0.18
Matches are distributed among these distances:
1 3 0.07
2 40 0.89
3 2 0.04
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (2 bp):
AT
Found at i:134315 original size:10 final size:10
Alignment explanation
Indices: 134279--134306 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
134269 CAGTTTCAGT
134279 TTTTTTTTAA
1 TTTTTTTTAA
134289 TTTTTTTTAA
1 TTTTTTTTAA
134299 TTTTTTTT
1 TTTTTTTT
134307 CATGTTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:135263 original size:18 final size:19
Alignment explanation
Indices: 135221--135264 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
135211 TTTGGTTCAC
*
135221 GGAATATAAGATTACCAGT
1 GGAATAAAAGATTACCAGT
135240 GAGAATAAAAGATTACCAG-
1 G-GAATAAAAGATTACCAGT
135259 GGAATA
1 GGAATA
135265 GGATTACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.22
19 2 0.09
20 16 0.70
ACGTcount: A:0.48, C:0.09, G:0.23, T:0.20
Consensus pattern (19 bp):
GGAATAAAAGATTACCAGT
Found at i:135473 original size:34 final size:37
Alignment explanation
Indices: 135404--135477 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 37
135394 ATAATATTAC
135404 AAATTGCAAAATATTTATATATTTTCTTTAAAAAATT
1 AAATTGCAAAATATTTATATATTTTCTTTAAAAAATT
* *
135441 AAATT-CATAATATTTATATA-TTT-TTTACAAAATT
1 AAATTGCAAAATATTTATATATTTTCTTTAAAAAATT
135475 AAA
1 AAA
135478 AATATAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 13 0.37
35 3 0.09
36 14 0.40
37 5 0.14
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (37 bp):
AAATTGCAAAATATTTATATATTTTCTTTAAAAAATT
Found at i:143496 original size:59 final size:59
Alignment explanation
Indices: 143418--143889 Score: 739
Period size: 59 Copynumber: 8.0 Consensus size: 59
143408 ATTATTTTCC
* * * * * *
143418 ATATGGAAATTCATACACTTAGTATGAATTTCTTATCATTTTGGCACAC-AAGGTGTCCA
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAA-GTGCCCT
** * * * * * *
143477 ATACAGAAATTCATACACTTAGTATGAATTTCTTATCATTTTGGTACACTAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
143536 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
* *
143595 ATATGGAAATTCATACACTTCGTATGAATTCCTTCTCATGTTAGCACACAAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
*
143654 ATATGGAAATTCATACAGTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
143713 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
*
143772 ATATGGAAATTCATACACTTAGTATGAATTCGTTCTCATGTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
** *
143831 ATATGGAAATTCATACACTTAGTATGAATTCCTTGACATTTTAGCACACGAAGTGCCCT
1 ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
143890 TCTGGTAATC
Statistics
Matches: 388, Mismatches: 24, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
59 386 0.99
60 2 0.01
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (59 bp):
ATATGGAAATTCATACACTTAGTATGAATTCCTTCTCATGTTAGCACACGAAGTGCCCT
Found at i:150663 original size:16 final size:16
Alignment explanation
Indices: 150639--150679 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
150629 AAAATTATAC
*
150639 AGACTACCTGAAACAA
1 AGACAACCTGAAACAA
150655 AGACAACCTGAAACAA
1 AGACAACCTGAAACAA
150671 AGACAACCT
1 AGACAACCT
150680 ACAATTGTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.51, C:0.27, G:0.12, T:0.10
Consensus pattern (16 bp):
AGACAACCTGAAACAA
Found at i:152847 original size:3 final size:3
Alignment explanation
Indices: 152818--152873 Score: 76
Period size: 3 Copynumber: 18.0 Consensus size: 3
152808 TTGGGCTTTG
* *
152818 TAA TAT TAA TAAA TAA TATA TAT TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA T-AA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
152865 TAA TAA TAA
1 TAA TAA TAA
152874 ATTTTAAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
3 41 0.87
4 6 0.13
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:153206 original size:123 final size:123
Alignment explanation
Indices: 153078--153303 Score: 319
Period size: 123 Copynumber: 1.8 Consensus size: 123
153068 GACCTATTTC
* * * * * * * *
153078 CTTCTGTGATAGAGTCATTCAAAAGGTTG-ATAAGTTCTTCTTATTTTGAACTTCTTCTTTCTTT
1 CTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTC-TTCCTC
* *
153142 TTCAGATGAGTTATTATTATTATGAACTTTCTCTGGAAAGGTTTATGCTAATCTATCTG
65 TTCAAATAAGTTATTATTATTATGAACTTTCTCTGGAAAGGTTTATGCTAATCTATCTG
*
153201 CTTCTGTGATAGAATTATGCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCCTCT
1 CTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCCTCT
* *
153266 TCAAATAAGTTCTTCTTATTATGAACTTTCTCTGGAAA
66 TCAAATAAGTTATTATTATTATGAACTTTCTCTGGAAA
153304 TATTGATCCA
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
123 65 0.73
124 24 0.27
ACGTcount: A:0.26, C:0.16, G:0.15, T:0.43
Consensus pattern (123 bp):
CTTCTGTGATAGAATCATGCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCCTCT
TCAAATAAGTTATTATTATTATGAACTTTCTCTGGAAAGGTTTATGCTAATCTATCTG
Found at i:153434 original size:113 final size:113
Alignment explanation
Indices: 153219--153860 Score: 902
Period size: 113 Copynumber: 5.7 Consensus size: 113
153209 ATAGAATTAT
** * * * * *
153219 GCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCC-TCTTCAAATAAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
153283 ATTATGAACTTTCTCTGGAAATA-TTGATCCATCAAGTGATGAATTTGA
66 ATTATGAACTTTATCTGGAAA-AGCTGATCCATCAAGTGATGGATTTGA
* * * *
153331 ACAAAAGGTTAAACAAGTTCTTCTCATTATGAACTTT-TTCTTCCTTCTTCAGATGAATTCTTCT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCT
* *
153395 CATTATGAACTCTAACTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
65 CATTATGAACTTTATCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
** *
153444 GCATTAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCCTTCAAGTAATGAGTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTC-AG--ATGAGTTCTT
* * *
153509 CTCATTATGAACTCTACCTGGAAAAAGCTGATCCATCAAATGATGGATTTGA
63 CTCATTATGAACTTTATCTGG-AAAAGCTGATCCATCAAGTGATGGATTTGA
153561 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
153626 ATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTATCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
*
153674 GCAAAAGGTTGAACAAA---TTCTCATTATGAATTTCTTCTT-CTTCTTCAGATGAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
* * *
153735 ATTATGAACTTTCTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
66 ATTATGAACTTTATCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
* *
153783 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCATTCTTCAGATGAGTTCTTCTT
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
153848 ATTATGAACTTTA
66 ATTATGAACTTTA
153861 ACTGACACTG
Statistics
Matches: 483, Mismatches: 35, Indels: 23
0.89 0.06 0.04
Matches are distributed among these distances:
109 86 0.18
110 22 0.05
112 62 0.13
113 176 0.36
114 30 0.06
116 31 0.06
117 76 0.16
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
ATTATGAACTTTATCTGGAAAAGCTGATCCATCAAGTGATGGATTTGA
Found at i:153590 original size:230 final size:226
Alignment explanation
Indices: 153219--153864 Score: 939
Period size: 230 Copynumber: 2.9 Consensus size: 226
153209 ATAGAATTAT
* * * *
153219 GCAAAAGGTTGAACAAGCTCTTCTCATTGTGAACTTCTTCTTCCTCTTCA-AATAAGTTCTTCTT
1 GCAAAAGGTTGAACAA-ATCTTCTCATTATGAATTTCTTCTTCCTCTTCAGAATGAGTTCTTCTT
* * * * *
153283 ATTATGAACTTTCTCTGGAAATA-TTGATCCATCAAGTGATGAATTTGAACAAAAGGTTAAACAA
65 ATTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAA
* * *
153347 GTTCTTCTCATTATGAACTTT-TTCTTCCTTCTTCAGATGAATTCTTCTCATTATGAACTCTAAC
130 ATTCTTCTCATTATGAA-TTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAAC
*
153411 TGGAAAAGCTGATCCATCAAGTGATGGATTTGA
194 TGGAAAAGCTAATCCATCAAGTGATGGATTTGA
**
153444 GCATTAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCCTTCAAGTAATGAGTTCTT
1 GCAAAAGGTTGAACAAA-TCTTCTCATTATGAATTTCTTCTTCCT-CTTC-AG-AATGAGTTCTT
* * *
153509 CTCATTATGAACTCTAC-CTGGAAAAAGCTGATCCATCAAATGATGGATTTGAGCAAAAGGTTGA
62 CTTATTATGAACT-TTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGA
153573 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT
126 ACAAATTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTT
** *
153638 CTCTGGCAAAGCTAATCCATCAAGTGATGGATTTGA
191 AACTGGAAAAGCTAATCCATCAAGTGATGGATTTGA
*
153674 GCAAAAGGTTGAACAAA--TTCTCATTATGAATTTCTTCTTCTTCTTCAG-ATGAGTTCTTCTTA
1 GCAAAAGGTTGAACAAATCTTCTCATTATGAATTTCTTCTTCCTCTTCAGAATGAGTTCTTCTTA
* *
153736 TTATGAACTTTCTCTGG-CAAAGCTAATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAA
66 TTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAA
* *
153800 TTCTTCTCATTATGAATTTCTTCTTCATTCTTCAGATGAGTTCTTCTTATTATGAACTTTAACTG
131 TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAACTG
153865 ACACTGTTGA
Statistics
Matches: 379, Mismatches: 33, Indels: 21
0.88 0.08 0.05
Matches are distributed among these distances:
222 107 0.28
223 26 0.07
225 41 0.11
226 8 0.02
227 25 0.07
229 33 0.09
230 139 0.37
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (226 bp):
GCAAAAGGTTGAACAAATCTTCTCATTATGAATTTCTTCTTCCTCTTCAGAATGAGTTCTTCTTA
TTATGAACTTTCTCTGGAAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAA
TTCTTCTCATTATGAATTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTAACTG
GAAAAGCTAATCCATCAAGTGATGGATTTGA
Done.