Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007575.1 Hibiscus syriacus cultivar Beakdansim tig00021597_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 174574
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Found at i:2034 original size:31 final size:30
Alignment explanation
Indices: 1981--2039 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
1971 CTTTTTAGGA
*
1981 AAATTACTACTTTAGACCCTAAACATTTCCC
1 AAATTACTACTTTAGACACTAAAC-TTTCCC
* * *
2012 AAATTTCTACTTTGGTCACTAAACTTTC
1 AAATTACTACTTTAGACACTAAACTTTC
2040 AAAATTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 4 0.17
31 20 0.83
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AAATTACTACTTTAGACACTAAACTTTCCC
Found at i:5818 original size:63 final size:63
Alignment explanation
Indices: 5640--5821 Score: 229
Period size: 63 Copynumber: 2.9 Consensus size: 63
5630 GATAGTAGTA
* * ** * * *
5640 AGGAAAAGCTTTTGATGGAAGGGGAAAACATCAGCAAACAGAATGGAAAGAACAGGATAACAG
1 AGGAAAAGTTTTTGAAGGAAGGGGAAAATGTAAGCAAACAGAATGGAAAGAAGAGGAGAACAG
* * *
5703 AGGAAACGTTTTTGAATGAAGGGGAAAATGTAAGCAAAAAGAATGGAAAGAAGAGGAGAACAG
1 AGGAAAAGTTTTTGAAGGAAGGGGAAAATGTAAGCAAACAGAATGGAAAGAAGAGGAGAACAG
* ** * *
5766 AGGAAAAGTTTTTGAAGGAAGGGGACAATGTTTGCAATCAGAATGTAAAGAAGAGG
1 AGGAAAAGTTTTTGAAGGAAGGGGAAAATGTAAGCAAACAGAATGGAAAGAAGAGG
5822 GGAGGGGATG
Statistics
Matches: 101, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 101 1.00
ACGTcount: A:0.46, C:0.07, G:0.31, T:0.16
Consensus pattern (63 bp):
AGGAAAAGTTTTTGAAGGAAGGGGAAAATGTAAGCAAACAGAATGGAAAGAAGAGGAGAACAG
Found at i:13756 original size:29 final size:29
Alignment explanation
Indices: 13711--13868 Score: 203
Period size: 29 Copynumber: 5.4 Consensus size: 29
13701 GACCCGACCC
* *
13711 GGGTGCTATTTTTGTAAATATTTTTAAAA
1 GGGTGTTATTTTAGTAAATATTTTTAAAA
13740 GGGTGTTATTTTAGTAAATATTTTTAAAA
1 GGGTGTTATTTTAGTAAATATTTTTAAAA
* *
13769 GGGTGTTATTTTTGTAAATACTTTTAAAA
1 GGGTGTTATTTTAGTAAATATTTTTAAAA
*
13798 -GGTGTTATTTTTGTAAATATTTTTAAAA
1 GGGTGTTATTTTAGTAAATATTTTTAAAA
* * *
13826 TGTTGTTAGTTTCA-TAAATATTTTTAAAA
1 GGGTGTTA-TTTTAGTAAATATTTTTAAAA
*
13855 AGGTGTTAGTTTTA
1 GGGTGTTA-TTTTA
13869 ATTCTGTTAG
Statistics
Matches: 116, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
28 27 0.23
29 86 0.74
30 3 0.03
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (29 bp):
GGGTGTTATTTTAGTAAATATTTTTAAAA
Found at i:13833 original size:57 final size:57
Alignment explanation
Indices: 13711--13867 Score: 215
Period size: 57 Copynumber: 2.7 Consensus size: 57
13701 GACCCGACCC
* *
13711 GGGTGCTATTTTTGTAAATATTTTTAAAAGGGTGTTATTTTAGTAAATATTTTTAAAA
1 GGGTGTTATTTTTGTAAATATTTTTAAAA-GGTGTTATTTTTGTAAATATTTTTAAAA
*
13769 GGGTGTTATTTTTGTAAATACTTTTAAAAGGTGTTATTTTTGTAAATATTTTTAAAA
1 GGGTGTTATTTTTGTAAATATTTTTAAAAGGTGTTATTTTTGTAAATATTTTTAAAA
* * * ** *
13826 TGTTGTTAGTTTCATAAATATTTTTAAAAAGGTGTTAGTTTT
1 GGGTGTTATTTTTGTAAATATTTTT-AAAAGGTGTTATTTTT
13868 AATTCTGTTA
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
57 46 0.52
58 42 0.48
ACGTcount: A:0.31, C:0.02, G:0.17, T:0.50
Consensus pattern (57 bp):
GGGTGTTATTTTTGTAAATATTTTTAAAAGGTGTTATTTTTGTAAATATTTTTAAAA
Found at i:30388 original size:14 final size:14
Alignment explanation
Indices: 30369--30395 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30359 ATGTCGAAGT
30369 ATTGGGAGACATTC
1 ATTGGGAGACATTC
30383 ATTGGGAGACATT
1 ATTGGGAGACATT
30396 GGACCTAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.30
Consensus pattern (14 bp):
ATTGGGAGACATTC
Found at i:39302 original size:32 final size:33
Alignment explanation
Indices: 39230--39310 Score: 128
Period size: 33 Copynumber: 2.5 Consensus size: 33
39220 GCTTGAGCCC
**
39230 CGGTCACCATCGGCAATCCCAGACGGGTGGCCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
*
39263 CGGTCACCATCGGCAAAACCAGACGGGT-GTCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
39295 CGGTCACCATCGGCAA
1 CGGTCACCATCGGCAA
39311 CCCCGAGCCA
Statistics
Matches: 45, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
32 19 0.42
33 26 0.58
ACGTcount: A:0.22, C:0.35, G:0.28, T:0.15
Consensus pattern (33 bp):
CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
Found at i:39639 original size:95 final size:95
Alignment explanation
Indices: 39470--39698 Score: 300
Period size: 95 Copynumber: 2.4 Consensus size: 95
39460 TTTCTTGGTC
* * *
39470 ACCATCAGCAACCCCCGATGGGTGCCTCGACAACCCCAGGGCACGGGTACGGGAGTGCCACACAG
1 ACCATCGGCAACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGTACGGGAGTGCCACACAG
39535 AGCTAAGAGTTGGGTGCAGGGGCCTCGATA
66 AGCTAAGAGTTGGGTGCAGGGGCCTCGATA
* * *
39565 ACCATCGGTAACCCCCGACGGGTGCCTCGACAACCCCAGGCCATGGGTGA-GGGAGTGCCGCACA
1 ACCATCGGCAACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGT-ACGGGAGTGCCACACA
* * * * *
39629 TAG-TCGAGAGTTGGGTGCGGGGGCCTCGGTC
65 GAGCT-AAGAGTTGGGTGCAGGGGCCTCGATA
* **
39660 ACCATCGACAACCCCCGACGGGTGCCTCGGTAACCCCAG
1 ACCATCGGCAACCCCCGACGGGTGCCTCGACAACCCCAG
39699 TCAATTGGTG
Statistics
Matches: 117, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
94 1 0.01
95 115 0.98
96 1 0.01
ACGTcount: A:0.21, C:0.33, G:0.33, T:0.13
Consensus pattern (95 bp):
ACCATCGGCAACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGTACGGGAGTGCCACACAG
AGCTAAGAGTTGGGTGCAGGGGCCTCGATA
Found at i:39742 original size:95 final size:95
Alignment explanation
Indices: 39470--39750 Score: 255
Period size: 95 Copynumber: 3.0 Consensus size: 95
39460 TTTCTTGGTC
* * * *
39470 ACCATC-AGCAACCCCCGATGGGTGCCTCGACAACCCCAGGGC-ACGGGT-ACGGGAGTGCCACA
1 ACCATCGA-CAACCCCCGACGGGTGCCTCGACAACCCCA-GGCAATGGGTGA-GGGAATGCCGCA
* ** *
39532 CAGAGCTAAGAGTTGGGTGCAGGGGCCTCGATA
63 CAGAACCGAGAGTTGGGTGCGGGGGCCTCGATA
** * * *
39565 ACCATCGGTAACCCCCGACGGGTGCCTCGACAACCCCAGGCCATGGGTGAGGGAGTGCCGCACAT
1 ACCATCGACAACCCCCGACGGGTGCCTCGACAACCCCAGGCAATGGGTGAGGGAATGCCGCACAG
** * *
39630 AGTCGAGAGTTGGGTGCGGGGGCCTCGGTC
66 AACCGAGAGTTGGGTGCGGGGGCCTCGATA
** * * * * *
39660 ACCATCGACAACCCCCGACGGGTGCCTCGGTAACCCCAGTCAATTGGTGCGGGAAAT-CTGCATA
1 ACCATCGACAACCCCCGACGGGTGCCTCGACAACCCCAGGCAATGGGTGAGGG-AATGCCGCACA
* * *
39724 GAACCGAGCGTTGAGTGCGGGAGCCTC
65 GAACCGAGAGTTGGGTGCGGGGGCCTC
39751 ACACAGCATC
Statistics
Matches: 153, Mismatches: 29, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
94 3 0.02
95 147 0.96
96 3 0.02
ACGTcount: A:0.22, C:0.31, G:0.33, T:0.15
Consensus pattern (95 bp):
ACCATCGACAACCCCCGACGGGTGCCTCGACAACCCCAGGCAATGGGTGAGGGAATGCCGCACAG
AACCGAGAGTTGGGTGCGGGGGCCTCGATA
Found at i:40030 original size:22 final size:22
Alignment explanation
Indices: 39996--40038 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
39986 TAGTGCTCCA
*
39996 ACTACGCTCCGACGATGCCCCG
1 ACTACGCTCCGACAATGCCCCG
* *
40018 ACTATGCTTCGACAATGCCCC
1 ACTACGCTCCGACAATGCCCC
40039 AATAAGACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.21, C:0.42, G:0.19, T:0.19
Consensus pattern (22 bp):
ACTACGCTCCGACAATGCCCCG
Found at i:52806 original size:32 final size:32
Alignment explanation
Indices: 52767--52851 Score: 143
Period size: 32 Copynumber: 2.7 Consensus size: 32
52757 AGTGAGCCCC
*
52767 GGTCACCATCGGCAAACCCATACGGGTGTCTG
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTG
*
52799 GGTCACCATCGGCACACCCAGACGGGTGTCTG
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTG
*
52831 GGTCACCATCGGCAACCCCAG
1 GGTCACCATCGGCAAACCCAG
52852 TCTAATGGTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.15
Consensus pattern (32 bp):
GGTCACCATCGGCAAACCCAGACGGGTGTCTG
Found at i:52976 original size:32 final size:32
Alignment explanation
Indices: 52931--53052 Score: 129
Period size: 32 Copynumber: 3.8 Consensus size: 32
52921 GTGTGCGTGA
* * *
52931 GCCTTGGTCACCATCGGCAATCCCAG-GGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
*
52962 GGCCTCGGTCACCATCGACAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * *
52995 GTCTCAGCCACTATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * *
53027 GTCTCGGTCACCATCGGTAACCCCAG
1 GCCTCGGTCACCATCGGCAAACCCAG
53053 GCCACGGTTA
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
32 71 0.95
33 4 0.05
ACGTcount: A:0.21, C:0.35, G:0.27, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:53203 original size:95 final size:95
Alignment explanation
Indices: 53040--53253 Score: 277
Period size: 95 Copynumber: 2.3 Consensus size: 95
53030 TCGGTCACCA
* * * * * *
53040 TCGGTAACCCCAGGCCACGGTTACGGGAGTGCTGCATAGAGCTAAAAGTTGGATGCGGGGGCCTC
1 TCGGTAACCCCAGGCCATGGGTGCAGGAGTGCTGCACAGAGCCAAAAGTTGGATGCGGGGGCCTC
*
53105 GGTCACCATCGGTAACCCCCGACAGGTGCC
66 GGTCACCATCGGCAACCCCCGACAGGTGCC
* * *
53135 TCGGTAACCCCAGGCCATGGGTGCAGGAGTG-TCGCACAGAGCCGAGAGTTGGGTGCGGGGGCCT
1 TCGGTAACCCCAGGCCATGGGTGCAGGAGTGCT-GCACAGAGCCAAAAGTTGGATGCGGGGGCCT
* *
53199 CGGTCACCATCGGCAACCTCCGACGGGTGCC
65 CGGTCACCATCGGCAACCCCCGACAGGTGCC
* * *
53230 TCGGTAACCACAGTCCATTGGTGC
1 TCGGTAACCCCAGGCCATGGGTGC
53254 GAGAAATCTG
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
94 1 0.01
95 102 0.99
ACGTcount: A:0.19, C:0.30, G:0.34, T:0.17
Consensus pattern (95 bp):
TCGGTAACCCCAGGCCATGGGTGCAGGAGTGCTGCACAGAGCCAAAAGTTGGATGCGGGGGCCTC
GGTCACCATCGGCAACCCCCGACAGGTGCC
Found at i:53267 original size:95 final size:95
Alignment explanation
Indices: 53086--53285 Score: 267
Period size: 95 Copynumber: 2.1 Consensus size: 95
53076 TAGAGCTAAA
* * *
53086 AGTTGGATGCGGGGGCCTCGGTCACCATCGGTAACCCCCGACAGGTGCCTCGGTAACCCCAGGCC
1 AGTTGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACAGGTGCCTCGGTAACCACAGGCC
* * * *
53151 ATGGGTGCAGGAGTGTCGCACAGAGCCGAG
66 ATGGGTGCAGAAATCTCGCACAGAGACGAG
* * *
53181 AGTTGGGTGCGGGGGCCTCGGTCACCATCGGCAACCTCCGACGGGTGCCTCGGTAACCACAGTCC
1 AGTTGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACAGGTGCCTCGGTAACCACAGGCC
* *
53246 ATTGGTGCGAGAAATCT-GCACAGATACGAG
66 ATGGGTGC-AGAAATCTCGCACAGAGACGAG
*
53276 AGCTGGGTGC
1 AGTTGGGTGC
53286 AGGAGCCTAA
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
95 86 0.95
96 5 0.05
ACGTcount: A:0.20, C:0.29, G:0.35, T:0.17
Consensus pattern (95 bp):
AGTTGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACAGGTGCCTCGGTAACCACAGGCC
ATGGGTGCAGAAATCTCGCACAGAGACGAG
Found at i:60383 original size:32 final size:33
Alignment explanation
Indices: 60311--60391 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
60301 GCGTGAGCCC
** *
60311 CGGTCACCATCGGCAATCCCATACGGGTGGCCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
*
60344 CGGTCACCATCGGCAAAACCAGACGGGT-GTCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
60376 CGGTCACCATCGGCAA
1 CGGTCACCATCGGCAA
60392 CCCCGGGCCA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
32 19 0.43
33 25 0.57
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.16
Consensus pattern (33 bp):
CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
Found at i:60718 original size:95 final size:95
Alignment explanation
Indices: 60549--60778 Score: 320
Period size: 95 Copynumber: 2.4 Consensus size: 95
60539 GGTTTCTTGG
*
60549 TCACCATCAGCAACCCCCGACGGGTGCCTCGACAACCCCAGGGCACGGGTACGGGAGTGCCACAC
1 TCACCATCAGCAACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGTACGGGAGTGCCACAC
*
60614 AGAGCCGAGAGTTGGGTGCATGGGCCTCGA
66 AGAGCCGAGAGTTGGGTGCAGGGGCCTCGA
* * * * *
60644 TCACCATCGGTAACCCCCGACGGGTGCCTCGACCACCCCAGGCCATGGGTGA-GGGAGTGCCGCA
1 TCACCATCAGCAACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGT-ACGGGAGTGCCACA
* * *
60708 CATAGTCGAGAGTTGGGTGCAGGGGCCTCGG
65 CAGAGCCGAGAGTTGGGTGCAGGGGCCTCGA
**
60739 TCACCATCTA-CAACCCCCGACGGGTGCCTCGGTAACCCCA
1 TCACCATC-AGCAACCCCCGACGGGTGCCTCGACAACCCCA
60779 ATCAATTGAT
Statistics
Matches: 118, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
95 117 0.99
96 1 0.01
ACGTcount: A:0.20, C:0.35, G:0.31, T:0.13
Consensus pattern (95 bp):
TCACCATCAGCAACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGTACGGGAGTGCCACAC
AGAGCCGAGAGTTGGGTGCAGGGGCCTCGA
Found at i:61111 original size:22 final size:22
Alignment explanation
Indices: 61077--61119 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
61067 TGGTGCTCCA
61077 ACTACGCTCCGACGATGCCCCG
1 ACTACGCTCCGACGATGCCCCG
* *
61099 ACTATGCTTCGACGATGCCCC
1 ACTACGCTCCGACGATGCCCC
61120 AATAAGACAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.42, G:0.21, T:0.19
Consensus pattern (22 bp):
ACTACGCTCCGACGATGCCCCG
Found at i:73764 original size:32 final size:32
Alignment explanation
Indices: 73725--73841 Score: 189
Period size: 32 Copynumber: 3.7 Consensus size: 32
73715 CGTGAGCCCT
*
73725 GGTCACCATCGGTAAACCCAGACGGGTGTCTG
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTG
*
73757 GGTCACCATTGGCAAACCCAGACGGGTGTCTG
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTG
* *
73789 GGTCACCATCGGCAAACCCAGACGAGTGTCTC
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTG
*
73821 GGTCACCATCGGCAACCCCAG
1 GGTCACCATCGGCAAACCCAG
73842 TCCATTGGTG
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 79 1.00
ACGTcount: A:0.23, C:0.32, G:0.28, T:0.16
Consensus pattern (32 bp):
GGTCACCATCGGCAAACCCAGACGGGTGTCTG
Found at i:74033 original size:32 final size:32
Alignment explanation
Indices: 73926--74042 Score: 128
Period size: 32 Copynumber: 3.7 Consensus size: 32
73916 CGTGAGCCTT
* * * *
73926 GGTCACCATCGGCAATCCTAG-GGGGTGGCCTC
1 GGTCACCATCGGCAAACCCAGACGGGT-GTCTC
*
73958 GGTCACCATCGACAAACCCAGACGGGTGTCTC
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTC
* * *
73990 AGCCACTATCGGCAAACCCAGACGGGTGTCTC
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTC
* *
74022 GGTCACCATCGGTAACCCCAG
1 GGTCACCATCGGCAAACCCAG
74043 GCCACGATTA
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
32 66 0.94
33 4 0.06
ACGTcount: A:0.22, C:0.34, G:0.27, T:0.16
Consensus pattern (32 bp):
GGTCACCATCGGCAAACCCAGACGGGTGTCTC
Found at i:74061 original size:201 final size:202
Alignment explanation
Indices: 73694--74104 Score: 522
Period size: 201 Copynumber: 2.0 Consensus size: 202
73684 GGAGAGTCGA
* * *
73694 TCACCATCAGGCCCCCGTGTACGTGAGCCCTGGTCACCATCGGTAAACCCAGACGGGTGTCTGGG
1 TCACCATCAGGCCCCCGTGTACGTGAGCCCTGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
* * ** *
73759 TCACCATTGGCAAACCCAGACGGGTGTCTGGGTCACCATCGGCAAACCCAGACGAGTGTCTCGGT
66 TCACCATCGACAAACCCAGACGGGTGTCTCAGCCACCATCGGCAAACCCAGACGAGTGTCTCGGT
* * * * * **
73824 CACCATCGGCAACCCCAGTCCATTGGTGCGGGAGTGCCGTACAGAACCGAGCGTTAG-TGCGGGA
131 CACCATCGGCAACCCCAGGCCATCGGTACAGGAGTGCCGCACAGAACCGAAAGTTAGATGCGGGA
73888 GCCTCGG
196 GCCTCGG
* * * * *
73895 TCACCATCAGGCCCCCGTGTGCGTGAGCCTTGGTCACCATCGGCAATCCTAG-GGGGTGGCCTCG
1 TCACCATCAGGCCCCCGTGTACGTGAGCCCTGGTCACCATCGGCAAACCCAGACGGGT-GCCTCG
* *
73959 GTCACCATCGACAAACCCAGACGGGTGTCTCAGCCACTATCGGCAAACCCAGACGGGTGTCTCGG
65 GTCACCATCGACAAACCCAGACGGGTGTCTCAGCCACCATCGGCAAACCCAGACGAGTGTCTCGG
* * * * * *
74024 TCACCATCGGTAACCCCAGGCCA-CGATTACAGGAGTGCTGCATAGAGCCGAAAGTTGGATGCGG
130 TCACCATCGGCAACCCCAGGCCATCG-GTACAGGAGTGCCGCACAGAACCGAAAGTTAGATGCGG
*
74088 GGGCCTCGG
194 GAGCCTCGG
74097 TCACCATC
1 TCACCATC
74105 GGTAACCCCC
Statistics
Matches: 178, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
200 5 0.03
201 152 0.85
202 21 0.12
ACGTcount: A:0.21, C:0.32, G:0.30, T:0.18
Consensus pattern (202 bp):
TCACCATCAGGCCCCCGTGTACGTGAGCCCTGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
TCACCATCGACAAACCCAGACGGGTGTCTCAGCCACCATCGGCAAACCCAGACGAGTGTCTCGGT
CACCATCGGCAACCCCAGGCCATCGGTACAGGAGTGCCGCACAGAACCGAAAGTTAGATGCGGGA
GCCTCGG
Found at i:74223 original size:95 final size:95
Alignment explanation
Indices: 74067--74242 Score: 244
Period size: 95 Copynumber: 1.9 Consensus size: 95
74057 AGTGCTGCAT
*
74067 AGAGCCGAAAGTTGGATGCGGGGGCCTCGGTCACCATCGGTAACCCCCGACAGGTAACTCGGCAA
1 AGAGCCGAAAGTTGGATGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACAGGTAACTCGGCAA
*
74132 CCCCAGGCCATGGGTGTAGGAGTGCCACAC
66 CCACAGGCCATGGGTGTAGGAGTGCCACAC
* * * * * ** *
74162 AGAGCCGAGAGTTGGGTGCGGGGGCCTTGGTCACCATCGGCAACCTCCGACGGGTGCCTCGGTAA
1 AGAGCCGAAAGTTGGATGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACAGGTAACTCGGCAA
* *
74227 CCACAGTCCATTGGTG
66 CCACAGGCCATGGGTG
74243 CGAGAAATCT
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
95 69 1.00
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (95 bp):
AGAGCCGAAAGTTGGATGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACAGGTAACTCGGCAA
CCACAGGCCATGGGTGTAGGAGTGCCACAC
Found at i:95477 original size:95 final size:95
Alignment explanation
Indices: 95353--95582 Score: 363
Period size: 95 Copynumber: 2.4 Consensus size: 95
95343 GTATCTTGGT
* * *
95353 CACCATCGGCATCCCCCAACGGGTGCCTCGGTAACCCCAGGCCACGGGTGCGGGAGTGCCGCACA
1 CACCATCGGTAACCCCCAACGGGTGCCTCGGTAACCCCAGGCCACGGGTACGGGAGTGCCGCACA
95418 GAGCCGAGAGTTGGGTGC-GGGGACCTCGGC
66 GAGCCGAGAGTTGGGTGCAGGGG-CCTCGGC
* * *
95448 CACCATCGGTAACCCCCGACTGGTGCCTCGGTAACCCCAGGTCACGGGTACGGGAGTGCCGCACA
1 CACCATCGGTAACCCCCAACGGGTGCCTCGGTAACCCCAGGCCACGGGTACGGGAGTGCCGCACA
*
95513 GAGCCGAGAGTTGGGTGCAGGGGCCTCGGT
66 GAGCCGAGAGTTGGGTGCAGGGGCCTCGGC
**
95543 CACCATCGGTAACCCCCAACGGGTGCCTCGACAACCCCAG
1 CACCATCGGTAACCCCCAACGGGTGCCTCGGTAACCCCAG
95583 TCCATTGGTG
Statistics
Matches: 123, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
95 119 0.97
96 4 0.03
ACGTcount: A:0.19, C:0.35, G:0.33, T:0.13
Consensus pattern (95 bp):
CACCATCGGTAACCCCCAACGGGTGCCTCGGTAACCCCAGGCCACGGGTACGGGAGTGCCGCACA
GAGCCGAGAGTTGGGTGCAGGGGCCTCGGC
Found at i:105744 original size:33 final size:32
Alignment explanation
Indices: 105702--105837 Score: 139
Period size: 32 Copynumber: 4.2 Consensus size: 32
105692 TGGTGCGTGA
*
105702 GCCTCGGTCACCATCGGCAATCCCA-AGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGA-CGGGT
*
105734 GGCCTCGGTCACCATTGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGACGGGT
** * *
105767 GTTTCGGTCACCATCGGTAAACCCTGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
* * * * * *
105799 GTCTCGGTCACTATCAGTAACCCCCGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
105831 GCCTCGG
1 GCCTCGG
105838 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
32 60 0.67
33 28 0.31
34 1 0.01
ACGTcount: A:0.18, C:0.34, G:0.29, T:0.19
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:105978 original size:95 final size:95
Alignment explanation
Indices: 105801--106005 Score: 286
Period size: 95 Copynumber: 2.2 Consensus size: 95
105791 TGACGGGTGT
* * *
105801 CTCGGTCACTATCAGTAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGAGTGCGGGAGTAC
1 CTCGGTCACCATCAGTAACCCCCGACGGGTGCCTCGGCAACCCCAGGACACGAGTGCAGGAGTAC
* * *
105866 CGGAAAGAGCCGAGAGTTGTGTGCGGGGTC
66 CGCAAAGAGCCGAGAGTTGGGTGCGGGGGC
* * * * *
105896 CTCGTTCACCATCGGTAACCCCCGACGGGTGCCTCGGTAACCCCAGGA-ACCGGGTGCAGGAGTG
1 CTCGGTCACCATCAGTAACCCCCGACGGGTGCCTCGGCAACCCCAGGACA-CGAGTGCAGGAGTA
*
105960 CCGCACAGAGCCGAGAGTTGGGTGCGGGGGC
65 CCGCAAAGAGCCGAGAGTTGGGTGCGGGGGC
105991 CTCGGTCACCATCAG
1 CTCGGTCACCATCAG
106006 GCCCCCGTGT
Statistics
Matches: 95, Mismatches: 14, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
94 1 0.01
95 94 0.99
ACGTcount: A:0.19, C:0.32, G:0.35, T:0.15
Consensus pattern (95 bp):
CTCGGTCACCATCAGTAACCCCCGACGGGTGCCTCGGCAACCCCAGGACACGAGTGCAGGAGTAC
CGCAAAGAGCCGAGAGTTGGGTGCGGGGGC
Found at i:106063 original size:33 final size:32
Alignment explanation
Indices: 106026--106106 Score: 90
Period size: 33 Copynumber: 2.5 Consensus size: 32
106016 GCGTGAGCCC
** *
106026 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAAACCAGACGGGT-GCCT
* * *
106059 CGGTCACCATCGGAAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGCCT
*
106091 CGGTCACCATCCGCAA
1 CGGTCACCATCGGCAA
106107 CCCCGGGCCA
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
32 17 0.43
33 23 0.57
ACGTcount: A:0.22, C:0.35, G:0.27, T:0.16
Consensus pattern (32 bp):
CGGTCACCATCGGCAAAACCAGACGGGTGCCT
Found at i:106239 original size:32 final size:32
Alignment explanation
Indices: 106161--106295 Score: 173
Period size: 32 Copynumber: 4.2 Consensus size: 32
106151 GTGCGTGAGG
* * *
106161 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
* *
106194 CTCAGTCACCATCGGCAAACCCATACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
*
106226 CTCGGTCACCATCGGCAAACCCAGACGGATGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* *
106258 CTCGGTCACCATCGGC-AACCCGCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCC-AGACGGGTGT
106290 CTCGGT
1 CTCGGT
106296 AACCCCAGGC
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
31 5 0.06
32 59 0.66
33 26 0.29
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:106384 original size:95 final size:95
Alignment explanation
Indices: 106280--106453 Score: 269
Period size: 95 Copynumber: 1.8 Consensus size: 95
106270 CGGCAACCCG
* * *
106280 CGACGGGTGCCTCGGTAACCCCAGGCCACAGGTGCGGGTGTACCAG-ATAGAGCCGAGAGTTGGG
1 CGACGGGTGCCTCGGCAACCCCAGGCCACAGGTGCGGGAGTACC-GCACAGAGCCGAGAGTTGGG
106344 TGCGGGGGCCTCGGTCAGTATCAGCAATCCT
65 TGCGGGGGCCTCGGTCAGTATCAGCAATCCT
* * *
106375 CGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGTGGGAGTGCCGCACAGAGCCGAGAGTTGGGT
1 CGACGGGTGCCTCGGCAACCCCAGGCCACAGGTGCGGGAGTACCGCACAGAGCCGAGAGTTGGGT
*
106440 GCGGGTGCCTCGGT
66 GCGGGGGCCTCGGT
106454 AACCCCCGAC
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
94 1 0.01
95 70 0.99
ACGTcount: A:0.17, C:0.28, G:0.40, T:0.16
Consensus pattern (95 bp):
CGACGGGTGCCTCGGCAACCCCAGGCCACAGGTGCGGGAGTACCGCACAGAGCCGAGAGTTGGGT
GCGGGGGCCTCGGTCAGTATCAGCAATCCT
Found at i:114515 original size:32 final size:32
Alignment explanation
Indices: 114437--114564 Score: 157
Period size: 32 Copynumber: 4.0 Consensus size: 32
114427 GTGCGTGAGC
* * ** *
114437 CTCGGTCACCATCGGGAATCCCAGGTGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GT
*
114470 CTCAGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
**
114502 CTCGGTCACCATCGATAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
* *
114534 CTCGGTCACCATCGGCAACCCCCGACGGGTG
1 CTCGGTCACCATCGGCAAACCCAGACGGGTG
114565 CGGGAGTGCC
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
32 57 0.70
33 25 0.30
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGT
Found at i:114643 original size:22 final size:22
Alignment explanation
Indices: 114615--114669 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
114605 TCGGTTACCA
*
114615 TCGGCAACCCCCGACGGGTGTC
1 TCGGCAACCCCCGACGGGTGCC
*
114637 TCGGCAACCCCCGATGGGTGCC
1 TCGGCAACCCCCGACGGGTGCC
*
114659 TCGGTAACCCC
1 TCGGCAACCCC
114670 AGGGCACGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.15, C:0.42, G:0.29, T:0.15
Consensus pattern (22 bp):
TCGGCAACCCCCGACGGGTGCC
Found at i:114797 original size:33 final size:32
Alignment explanation
Indices: 114755--114843 Score: 115
Period size: 33 Copynumber: 2.8 Consensus size: 32
114745 GCGTGAGCCC
114755 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAATCCCAGGCGGGT-GCCT
* ** ** *
114788 CGGTCACCATCGGTAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAATCCCAGGCGGGTGCCT
114820 CGGTCACCATCGGCAATCCCAGGC
1 CGGTCACCATCGGCAATCCCAGGC
114844 CATTGGTGCG
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
32 22 0.49
33 23 0.51
ACGTcount: A:0.20, C:0.35, G:0.28, T:0.17
Consensus pattern (32 bp):
CGGTCACCATCGGCAATCCCAGGCGGGTGCCT
Found at i:114824 original size:65 final size:63
Alignment explanation
Indices: 114755--115001 Score: 187
Period size: 65 Copynumber: 3.7 Consensus size: 63
114745 GCGTGAGCCC
114755 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGTAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGG-AAAACCA-ACGGGTGTCT
*** * **** *
114820 CGGTCACCATCGGCAATCCCAGGCCATTGG--TGCGG-GAGTGCCGGACAGAACCGAGCGTTGGT
1 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT-CGGTCACCATCGGA-A-AACC-AACG--GGT
114882 GCGTGAACCT
60 --GT----CT
*
114892 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGCAAACTCAGACGGGTGTCT
1 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGAAAAC-CA-ACGGGTGTCT
* * * **
114957 CGGTCACCATCGACAAACCCAGACGGGT-GTTTCGGTCACCATCGG
1 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGG
115002 CAACCCCCGA
Statistics
Matches: 141, Mismatches: 24, Indels: 35
0.70 0.12 0.17
Matches are distributed among these distances:
62 1 0.01
63 6 0.04
64 24 0.17
65 55 0.39
66 3 0.02
68 2 0.01
69 2 0.01
71 3 0.02
72 33 0.23
73 7 0.05
74 5 0.04
ACGTcount: A:0.20, C:0.32, G:0.31, T:0.17
Consensus pattern (63 bp):
CGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTCACCATCGGAAAACCAACGGGTGTCT
Found at i:114931 original size:33 final size:32
Alignment explanation
Indices: 114889--115023 Score: 171
Period size: 32 Copynumber: 4.2 Consensus size: 32
114879 GGTGCGTGAA
* *
114889 CCTCGGTCACCATCGGCAATCCCAGGCGGGTGG
1 CCTCGGTCACCATCGGCAAACCCAGACGGGT-G
*
114922 CCTCGGTCACCATCGGCAAACTCAGACGGGTG
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTG
* *
114954 TCTCGGTCACCATCGACAAACCCAGACGGGTG
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTG
** * * *
114986 TTTCGGTCACCATCGGCAACCCCCGACAGGTG
1 CCTCGGTCACCATCGGCAAACCCAGACGGGTG
115018 CCTCGG
1 CCTCGG
115024 CAACCCCAGG
Statistics
Matches: 89, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
32 61 0.69
33 28 0.31
ACGTcount: A:0.19, C:0.36, G:0.28, T:0.16
Consensus pattern (32 bp):
CCTCGGTCACCATCGGCAAACCCAGACGGGTG
Found at i:115099 original size:95 final size:95
Alignment explanation
Indices: 114988--115237 Score: 383
Period size: 95 Copynumber: 2.6 Consensus size: 95
114978 GACGGGTGTT
* *
114988 TCGGTCACCATCGGCAACCCCCGACAGGTGCCTCGGCAACCCCAGGCCACGGGTGTGGGAGTGCC
1 TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* *
115053 GGACAGAGTCGAGAGTTAGGTGCGGGGGCC
66 GCACAGAGACGAGAGTTAGGTGCGGGGGCC
* *
115083 TCGGTCACCATCGGCAACCCCTGACGGGTGCCTCGGTAACCCCAGGCCACGGGTGCGGGAGTGCC
1 TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
*
115148 GCACAGAGACGAGAGTTGGGTGCGGGGGCC
66 GCACAGAGACGAGAGTTAGGTGCGGGGGCC
* * * * **
115178 TCGGTCACCATCGGTAACACCCGACGGGTGCCTCGACAACCCCAGTCCATTGGTGCGGGA
1 TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGA
115238 AATCCGCATA
Statistics
Matches: 140, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
95 140 1.00
ACGTcount: A:0.18, C:0.32, G:0.36, T:0.14
Consensus pattern (95 bp):
TCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAGACGAGAGTTAGGTGCGGGGGCC
Found at i:115275 original size:95 final size:93
Alignment explanation
Indices: 114988--115268 Score: 357
Period size: 95 Copynumber: 3.0 Consensus size: 93
114978 GACGGGTGTT
* *
114988 TCGGTCACCATCGGCAACCCCCGACAGGTGCCTCGGCAACCCCAGGCCACGGGTGTGGGAGTGCC
1 TCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
* * *
115053 GGACAGAGTCGAGAGTTAGGTGCGGGGGCC
65 GCACAGA-ACGAGAGTTGGGTGCGGGGGCC
*
115083 TCGGTCACCATCGGCAACCCCTGACGGGTGCCTCGGTAACCCCAGGCCACGGGTGCGGGAGTGCC
1 TCGGTCACCATCGGCAACCCC-GACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCC
115148 GCACAGAGACGAGAGTTGGGTGCGGGGGCC
65 GCACAGA-ACGAGAGTTGGGTGCGGGGGCC
* * * ** *
115178 TCGGTCACCATCGGTAACACCCGACGGGTGCCTCGACAACCCCAGTCCATTGGTGCGGGAAAT-C
1 TCGGTCACCATCGGCAAC-CCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG-AGTGC
* * *
115242 CGCATAGAACCGAGCGCTGGGTGCGGG
64 CGCACAGAA-CGAGAGTTGGGTGCGGG
115269 AACCTCGCAT
Statistics
Matches: 166, Mismatches: 16, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
94 5 0.03
95 156 0.94
96 5 0.03
ACGTcount: A:0.19, C:0.32, G:0.36, T:0.14
Consensus pattern (93 bp):
TCGGTCACCATCGGCAACCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCG
CACAGAACGAGAGTTGGGTGCGGGGGCC
Found at i:115516 original size:11 final size:11
Alignment explanation
Indices: 115500--115538 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
115490 CACCGGCGAC
115500 GCTCCGACGAT
1 GCTCCGACGAT
* *
115511 GCTCCGGCGAC
1 GCTCCGACGAT
115522 GCTCCGACGAT
1 GCTCCGACGAT
115533 GCTCCG
1 GCTCCG
115539 GCGAGACATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.13, C:0.41, G:0.31, T:0.15
Consensus pattern (11 bp):
GCTCCGACGAT
Found at i:115520 original size:22 final size:22
Alignment explanation
Indices: 115492--115542 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
115482 CAGTGGTGCA
115492 CCGGCGACGCTCCGACGATGCT
1 CCGGCGACGCTCCGACGATGCT
115514 CCGGCGACGCTCCGACGATGCT
1 CCGGCGACGCTCCGACGATGCT
115536 CCGGCGA
1 CCGGCGA
115543 GACATAATCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.14, C:0.41, G:0.33, T:0.12
Consensus pattern (22 bp):
CCGGCGACGCTCCGACGATGCT
Found at i:128141 original size:32 final size:33
Alignment explanation
Indices: 128069--128145 Score: 104
Period size: 33 Copynumber: 2.4 Consensus size: 33
128059 GCGTGAGCCC
**
128069 CGGTCACCATCGACAATCCCAAGCGGGTGGCCT
1 CGGTCACCATCGACAAAACCAAGCGGGTGGCCT
*
128102 CGGTCACCATCGACAAAACCATA-CGGGT-GTCT
1 CGGTCACCATCGACAAAACCA-AGCGGGTGGCCT
128134 CGGTCACCATCG
1 CGGTCACCATCG
128146 GTAACCCCGG
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
32 15 0.38
33 24 0.60
34 1 0.03
ACGTcount: A:0.23, C:0.35, G:0.25, T:0.17
Consensus pattern (33 bp):
CGGTCACCATCGACAAAACCAAGCGGGTGGCCT
Found at i:128244 original size:33 final size:32
Alignment explanation
Indices: 128202--128305 Score: 147
Period size: 32 Copynumber: 3.2 Consensus size: 32
128192 TGGTGCGTGA
*
128202 GCCTCGGTCACCATCGGCAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAATCCCAGACGGGT
*
128234 GGCCTCGGTCACCGTCGGC-ATACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAT-CCCAGACGGGT
* *
128267 GTCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAATCCCAGACGGGT
128299 GCCTCGG
1 GCCTCGG
128306 CAACCCCAGG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
32 35 0.56
33 28 0.44
ACGTcount: A:0.16, C:0.37, G:0.32, T:0.15
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAATCCCAGACGGGT
Found at i:128381 original size:95 final size:94
Alignment explanation
Indices: 128269--128557 Score: 400
Period size: 95 Copynumber: 3.0 Consensus size: 94
128259 AGACGGGTGT
128269 CTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAAACCC-GACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
* * *
128334 CGGACAGAGTCGAGAGTTGGGTGCGGGGGC
65 AGCACAGAGCCGAGAGTTGGGTGCGGGGGC
*
128364 CTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
1 CTCGGTCACCATCGGCAA-ACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGC
128429 AGCACAGAGCCGAGAGTTGGGTGCGGGGGC
65 AGCACAGAGCCGAGAGTTGGGTGCGGGGGC
* * * ** *
128459 CTCGGTCACCATTGGCAACACCCGACGGGTGCCTCGGCAACTCCAGTCCATTGGTGCGGGAAAT-
1 CTCGGTCACCATCGGCAA-ACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGG-AGTG
* * * * *
128523 CCGCACAGAACCGAGCGCTGGGTGCGGGAGC
64 CAGCACAGAGCCGAGAGTTGGGTGCGGGGGC
128554 CTCG
1 CTCG
128558 CACAGCGTCG
Statistics
Matches: 176, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
95 171 0.97
96 5 0.03
ACGTcount: A:0.18, C:0.33, G:0.37, T:0.12
Consensus pattern (94 bp):
CTCGGTCACCATCGGCAAACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTGCGGGAGTGCA
GCACAGAGCCGAGAGTTGGGTGCGGGGGC
Found at i:141711 original size:32 final size:32
Alignment explanation
Indices: 141635--141770 Score: 164
Period size: 32 Copynumber: 4.2 Consensus size: 32
141625 TGGTGCGTGA
* * *
141635 GCCTCGGTCACCATCGGTAATCCCAGGCGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
*
141667 GGCCTCGGTCACCGTCGGCAAACCCAGACGGGT
1 -GCCTCGGTCACCATCGGCAAACCCAGACGGGT
* *
141700 GTCTCGGTCACCATCGACAAACCCAGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
** * * *
141732 GTATCGGTCACCATCGGTAACCCCCGACGGGT
1 GCCTCGGTCACCATCGGCAAACCCAGACGGGT
141764 GCCTCGG
1 GCCTCGG
141771 CAAGCCCAGG
Statistics
Matches: 89, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
32 61 0.69
33 28 0.31
ACGTcount: A:0.18, C:0.35, G:0.30, T:0.16
Consensus pattern (32 bp):
GCCTCGGTCACCATCGGCAAACCCAGACGGGT
Found at i:141850 original size:95 final size:95
Alignment explanation
Indices: 141735--141936 Score: 282
Period size: 95 Copynumber: 2.1 Consensus size: 95
141725 GACGGGTGTA
*** * *
141735 TCGGTCACCATCGGTAACCCCCGACGGGTGCCTCGGCAAGCCCAGGCCACGGGTGCGGGAGTGCC
1 TCGGTCACCATCGACGACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGTGCGGGAGTGCC
*
141800 AG-ACA-AATCCGAGAGTTGGGTGTGGGGGCC
66 -GCACAGAAT-CGAGAGTTGGGTGCGGGGGCC
* * *
141830 TCGGTTACCATCGACGACCCCCGATGGGTGCCTCGACAACCCCAGGGCACGGGTGCGGGAGTGCC
1 TCGGTCACCATCGACGACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGTGCGGGAGTGCC
*
141895 GCACAGAGTCGAGAGTTGGGTGCGGGGGCC
66 GCACAGAATCGAGAGTTGGGTGCGGGGGCC
141925 TCGGTCACCATC
1 TCGGTCACCATC
141937 AGGCCCCGTG
Statistics
Matches: 94, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
94 1 0.01
95 91 0.97
96 2 0.02
ACGTcount: A:0.17, C:0.31, G:0.37, T:0.14
Consensus pattern (95 bp):
TCGGTCACCATCGACGACCCCCGACGGGTGCCTCGACAACCCCAGGCCACGGGTGCGGGAGTGCC
GCACAGAATCGAGAGTTGGGTGCGGGGGCC
Found at i:142220 original size:32 final size:32
Alignment explanation
Indices: 142096--142207 Score: 152
Period size: 32 Copynumber: 3.5 Consensus size: 32
142086 CGTGAACCTT
* * * *
142096 GGTCACCATCGGCAATCCTAGGCGGGTGGCCTC
1 GGTCACCATCGGCAAACCCAGACGGGT-GTCTC
*
142129 GGTCACCATCGGGAAACCCAGACGGGTGTCTC
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTC
**
142161 GGTCATAATCGGCAAACCCAGACGGGTGTCTC
1 GGTCACCATCGGCAAACCCAGACGGGTGTCTC
142193 GGTCACCATCGGCAA
1 GGTCACCATCGGCAA
142208 CCCCCGATGG
Statistics
Matches: 69, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
32 46 0.67
33 23 0.33
ACGTcount: A:0.21, C:0.31, G:0.30, T:0.17
Consensus pattern (32 bp):
GGTCACCATCGGCAAACCCAGACGGGTGTCTC
Found at i:142329 original size:456 final size:456
Alignment explanation
Indices: 141473--142330 Score: 1319
Period size: 456 Copynumber: 1.9 Consensus size: 456
141463 GGAGAGTCGA
* * *
141473 TCACCATCAGGCCCCCGTATGCATGAGCCCCGGTCACCATCGGCAATCTCAGGCGGGTGGCCTCG
1 TCACCATCAGGCCCCCGTATACATGAGCCCCGGTCACCATCGACAATCCCAGGCGGGTGGCCTCG
141538 CCACCATCGGCAAAACCATACGGGTGTCTCGGTCACCATCGGCAACCCCAGGCCATTGGTGCGTG
66 CCACCATCGGCAAAACCATACGGGTGTCTCGGTCACCATCGGCAACCCCAGGCCATTGGTGCGTG
* * * *
141603 AGTGCCGCGCATGTTAGAGCGTTGGTGCGTGAGCCTCGGTCACCATCGGTAATCCCAGGCGGGTG
131 AGTGCCGCACATGTAAGAGCGTTGGTGCGTGAACCTCGGTCACCATCGGCAATCCCAGGCGGGTG
* *
141668 GCCTCGGTCACCGTCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGACAAACCCAGACGGGTG
196 GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACAATCGACAAACCCAGACGGGTG
* * *
141733 TATCGGTCACCATCGGTAACCCCCGACGGGTGCCTCGGCAAGCCCAGGCCACGGGTGCGGGAGTG
261 TATCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTACGGGAGTG
* * * * * *
141798 CCAGACAAATCCGAGAGTTGGGTGTGGGGGCCTCGGTTACCATCGACGACCCCCGATGGGTGCCT
326 CCAGACAAAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCATCGACAACACCCGACGGGTGCCT
141863 CGACAACCCCAGGGCACGGGTGCGGGAGTGCCGCACAGAGTCGAGAGTTGGGTGCGGGGGCCTCG
391 CGACAACCCCAGGGCACGGGTGCGGGAGTGCCGCACAGAGTCGAGAGTTGGGTGCGGGGGCCTCG
141928 G
456 G
* *
141929 TCACCATCAGG-CCCCGTGTACGTGAGCCCCGGTCACCATCGACAATCCCAGGCGGGTGGCCTCG
1 TCACCATCAGGCCCCCGTATACATGAGCCCCGGTCACCATCGACAATCCCAGGCGGGTGGCCTC-
* * *
141993 GTCACCATCGGCAAAACCATATGGGTGTCTCGGTCACCATCGGCAACCCCGGGCCATTGGTGCG-
65 GCCACCATCGGCAAAACCATACGGGTGTCTCGGTCACCATCGGCAACCCCAGGCCATTGGTGCGT
* * *
142057 GTAGTGTCGCACA-G-AACCGAGCGTTGGTGCGTGAACCTTGGTCACCATCGGCAATCCTAGGCG
130 G-AGTGCCGCACATGTAA--GAGCGTTGGTGCGTGAACCTCGGTCACCATCGGCAATCCCAGGCG
* * *
142120 GGTGGCCTCGGTCACCATCGGGAAACCCAGACGGGTGTCTCGGTCATAATCGGCAAACCCAGACG
192 GGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACAATCGACAAACCCAGACG
* * *
142185 GGTGTCTCGGTCACCATCGGCAACCCCCGATGGGTGCCTCTGCAACCCCAGGCCACGGGTACGGG
257 GGTGTATCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTACGGG
* * *
142250 AGTGCCAGACAGAGCCGAGAGTTGGGTGCGGGGGCTTCGGTCACCATCGGCAACACCCGACGGGT
322 AGTGCCAGACAAAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCATCGACAACACCCGACGGGT
**
142315 GCCTCGGTAACCCCAG
387 GCCTCGACAACCCCAG
142331 TCCATTGGTA
Statistics
Matches: 361, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
454 1 0.00
455 49 0.14
456 311 0.86
ACGTcount: A:0.19, C:0.33, G:0.33, T:0.16
Consensus pattern (456 bp):
TCACCATCAGGCCCCCGTATACATGAGCCCCGGTCACCATCGACAATCCCAGGCGGGTGGCCTCG
CCACCATCGGCAAAACCATACGGGTGTCTCGGTCACCATCGGCAACCCCAGGCCATTGGTGCGTG
AGTGCCGCACATGTAAGAGCGTTGGTGCGTGAACCTCGGTCACCATCGGCAATCCCAGGCGGGTG
GCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACAATCGACAAACCCAGACGGGTG
TATCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTACGGGAGTG
CCAGACAAAGCCGAGAGTTGGGTGCGGGGGCCTCGGTCACCATCGACAACACCCGACGGGTGCCT
CGACAACCCCAGGGCACGGGTGCGGGAGTGCCGCACAGAGTCGAGAGTTGGGTGCGGGGGCCTCG
G
Found at i:142357 original size:95 final size:95
Alignment explanation
Indices: 142191--142376 Score: 232
Period size: 95 Copynumber: 2.0 Consensus size: 95
142181 GACGGGTGTC
* * * *
142191 TCGGTCACCATCGGCAACCCCCGATGGGTGCCTCTGCAACCCCAGGCCACGGGTACGGGAGTGCC
1 TCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTACGGGAATGCC
* *
142256 AGACAGAGCCGAGAGTTGGGTGCGGGGGCT
66 AGACAGAACCGAGAGCTGGGTGCGGGGGCT
* * **
142286 TCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGTAACCCCAGTCCATTGGTACGGGAAAT-C
1 TCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTACGGG-AATGC
* *
142350 C-GCACAGAACTGAGCGCTGGGTGCGGG
65 CAG-ACAGAACCGAGAGCTGGGTGCGGG
142377 AACCTCGCAC
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
94 1 0.01
95 74 0.96
96 2 0.03
ACGTcount: A:0.19, C:0.32, G:0.34, T:0.15
Consensus pattern (95 bp):
TCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGTACGGGAATGCC
AGACAGAACCGAGAGCTGGGTGCGGGGGCT
Found at i:155521 original size:32 final size:33
Alignment explanation
Indices: 155449--155529 Score: 110
Period size: 33 Copynumber: 2.5 Consensus size: 33
155439 GCGTGAGCCA
** *
155449 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
* *
155482 CGGTCACCATCGGCAAAACCATACGGGT-GTCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
155514 CGGTCACCATCGGCAA
1 CGGTCACCATCGGCAA
155530 CCCCGGGCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 19 0.44
33 24 0.56
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.16
Consensus pattern (33 bp):
CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
Found at i:155684 original size:32 final size:31
Alignment explanation
Indices: 155582--155668 Score: 138
Period size: 32 Copynumber: 2.7 Consensus size: 31
155572 TGGTGCGTGA
*
155582 GGCTCGGTCACCATCGGCAACCCAGGCGGGT
1 GGCTCGGTCACCATCGGCAACCCAGACGGGT
155613 GGCCTCGGTCACCATCGGCAAACCCAGACGGGT
1 GG-CTCGGTCACCATCGGC-AACCCAGACGGGT
*
155646 GTCTCGGTCACCATCGGCAACCC
1 GGCTCGGTCACCATCGGCAACCC
155669 CCGATGTGTG
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
31 7 0.13
32 32 0.62
33 13 0.25
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.14
Consensus pattern (31 bp):
GGCTCGGTCACCATCGGCAACCCAGACGGGT
Found at i:155804 original size:63 final size:63
Alignment explanation
Indices: 155731--155865 Score: 252
Period size: 63 Copynumber: 2.1 Consensus size: 63
155721 GCCGAGAGTT
*
155731 GGGTGCGGGGGCCTCGGTCACCATCGACAACCCCCGACGGGTGCCTCTGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGACAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
*
155794 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCTCGGTCACCATCGACAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
155857 GGGTGCGGG
1 GGGTGCGGG
155866 AGTGCCGCAC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 70 1.00
ACGTcount: A:0.14, C:0.39, G:0.36, T:0.10
Consensus pattern (63 bp):
GGGTGCGGGGGCCTCGGTCACCATCGACAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:155840 original size:95 final size:96
Alignment explanation
Indices: 155607--155842 Score: 223
Period size: 95 Copynumber: 2.5 Consensus size: 96
155597 GGCAACCCAG
* * *
155607 GCGGGTGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCG
1 GCGGGAGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGACAACCCCCG
* * *
155672 ATGTGTGGCTCGGCAACCCCAGGCCACGGGT
66 ACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* * * ***** * *
155703 GCGGGAGTG-C-CGGAT-A-GAGCCG-AGAGTTGGGTGCGGGGGCCTCGGTCACCATCGACAACC
1 GCGGGAG-GCCTCGG-TCACCATCGGCA-AACCCAG-ACGGGTGCCTCGGTCACCATCGACAACC
*
155763 CCCGACGGGTGCCTCTGCAACCCCAGGCCACGGGT
62 CCCGACGGGTGCCTCGGCAACCCCAGGCCACGGGT
* *
155798 GCGGG-GGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 GCGGGAGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
155843 CAACCCCAGG
Statistics
Matches: 104, Mismatches: 27, Indels: 19
0.69 0.18 0.13
Matches are distributed among these distances:
93 2 0.02
94 8 0.08
95 79 0.76
96 13 0.12
97 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.13
Consensus pattern (96 bp):
GCGGGAGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGACAACCCCCG
ACGGGTGCCTCGGCAACCCCAGGCCACGGGT
Found at i:155974 original size:32 final size:32
Alignment explanation
Indices: 155900--156033 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
155890 GTGCGTGAGG
* *
155900 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
*
155933 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
155965 CTCGGTCACCATCGACAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
155997 CTCGGTCACCATCGGCAACCCCCGATGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
156029 CTCGG
1 CTCGG
156034 CAACCCCAGG
Statistics
Matches: 92, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
32 64 0.70
33 28 0.30
ACGTcount: A:0.19, C:0.37, G:0.29, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:156116 original size:95 final size:95
Alignment explanation
Indices: 155794--156182 Score: 354
Period size: 95 Copynumber: 4.1 Consensus size: 95
155784 CCCAGGCCAC
155794 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
*
155859 GTGCGGGAGTGCCGCACAGAACCGAGCG-T
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * * * *
155888 TGGTGCGTGAGG-CTCGGTCACCATCGGCAATCCCAGGCGGGTGGCCTCGGTC-ACCATCGGCAA
1 GGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACC--C--C-A
** ** * * *
155951 ACCCAGACGGGTGTCTCG-GTCACCATCGACA-AACCCAGA-C-
58 GGCC--ACGGGTG-CGGGAGT-GCC-GC-ACAGAACCGAGAGCT
* *
155991 GGGT------GTCTCGGTCACCATCGGCAACCCCCGATGGGTGCCTCGGCAACCCCAGGCCACGG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
156050 GTGCGGGAGTGCCGCACAGAGCCGAGAGTT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
* * **
156080 GGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATTG
1 GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
* *
156145 GTGCGGGAGTGCCACACAGAACCGAGCGCT
66 GTGCGGGAGTGCCGCACAGAACCGAGAGCT
156175 GGGTGCGG
1 GGGTGCGG
156183 CAGCCTCGCA
Statistics
Matches: 231, Mismatches: 37, Indels: 53
0.72 0.12 0.17
Matches are distributed among these distances:
86 3 0.01
87 7 0.03
88 4 0.02
89 13 0.06
91 3 0.01
92 1 0.00
94 34 0.15
95 97 0.42
96 12 0.05
97 27 0.12
99 1 0.00
100 3 0.01
102 9 0.04
103 7 0.03
104 7 0.03
105 3 0.01
ACGTcount: A:0.17, C:0.34, G:0.35, T:0.13
Consensus pattern (95 bp):
GGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACGG
GTGCGGGAGTGCCGCACAGAACCGAGAGCT
Found at i:164421 original size:33 final size:32
Alignment explanation
Indices: 164384--164464 Score: 99
Period size: 33 Copynumber: 2.5 Consensus size: 32
164374 GCGTGAGCCC
* ** *
164384 CGGTCACCATCGGTAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAAACCAGACGGGT-GCCT
* *
164417 CGGTCACCATCGGCAAAACCATACGGGTGTCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGCCT
164449 CGGTCACCATCGGCAA
1 CGGTCACCATCGGCAA
164465 CCCCGGGCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 19 0.45
33 23 0.55
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.17
Consensus pattern (32 bp):
CGGTCACCATCGGCAAAACCAGACGGGTGCCT
Found at i:164560 original size:32 final size:31
Alignment explanation
Indices: 164519--164618 Score: 128
Period size: 32 Copynumber: 3.1 Consensus size: 31
164509 GTGCGTGAGG
*
164519 CTCGGTCACCATCGGCAACCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAACCCAGACGGGT-GC
* *
164551 CTCGGTCACCATCGACAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGC-AACCCAGACGGGTGC
* *
164583 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAA-CCCAGACGGGTGC
164615 CTCG
1 CTCG
164619 ACAACCCCAG
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
31 2 0.03
32 46 0.77
33 12 0.20
ACGTcount: A:0.18, C:0.38, G:0.30, T:0.14
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAACCCAGACGGGTGC
Found at i:164743 original size:63 final size:63
Alignment explanation
Indices: 164665--164800 Score: 254
Period size: 63 Copynumber: 2.2 Consensus size: 63
164655 AGCCGAGAGT
*
164665 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCTGCAACCCCAGGCCA
1 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCA
164728 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCA
1 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCA
*
164791 CGGGTGCGGG
1 TGGGTGCGGG
164801 AGTGCCGCAC
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 71 1.00
ACGTcount: A:0.13, C:0.38, G:0.37, T:0.12
Consensus pattern (63 bp):
TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCA
Found at i:164775 original size:95 final size:96
Alignment explanation
Indices: 164542--164777 Score: 232
Period size: 95 Copynumber: 2.5 Consensus size: 96
164532 GGCAACCCAG
* * *
164542 GCGGGTGGCCTCGGTCACCATCGACAAACCCAGACGGGTGTCTCGGTCACCATCGGCAACCCCCG
1 GCGGGAGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCG
*
164607 ACGGGTGGCTCGACAACCCCAGGCCACGGGT
66 ACGGGTGCCTCGACAACCCCAGGCCACGGGT
* * * * ***** * *
164638 GCGGGAGTG-C-CGGACA-GAGCCG-AGAGTTGGGTGCGGGGGCCTCGGTCACCATCGGCAACCC
1 GCGGGAG-GCCTCGGTCACCATCGGCA-AACCCAG-ACGGGTGCCTCGGTCACCATCGGCAACCC
*
164699 CCGACGGGTGCCTCTG-CAACCCCAGGCCATGGGT
63 CCGACGGGTGCCTC-GACAACCCCAGGCCACGGGT
* *
164733 GCGGG-GGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGG
1 GCGGGAGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGG
164778 CAACCCCAGG
Statistics
Matches: 105, Mismatches: 27, Indels: 17
0.70 0.18 0.11
Matches are distributed among these distances:
93 2 0.02
94 6 0.06
95 82 0.78
96 13 0.12
97 2 0.02
ACGTcount: A:0.16, C:0.36, G:0.36, T:0.12
Consensus pattern (96 bp):
GCGGGAGGCCTCGGTCACCATCGGCAAACCCAGACGGGTGCCTCGGTCACCATCGGCAACCCCCG
ACGGGTGCCTCGACAACCCCAGGCCACGGGT
Found at i:164909 original size:32 final size:32
Alignment explanation
Indices: 164835--164968 Score: 187
Period size: 32 Copynumber: 4.2 Consensus size: 32
164825 GTGCGTGAGG
* * *
164835 CTCGGTCACCATCGGCAATCTCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
*
164868 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
*
164900 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* * *
164932 CTCGGTTACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
164964 CTCGG
1 CTCGG
164969 CAACCCCAGG
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
32 66 0.71
33 27 0.29
ACGTcount: A:0.18, C:0.36, G:0.30, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Found at i:165044 original size:95 final size:95
Alignment explanation
Indices: 164728--165117 Score: 349
Period size: 95 Copynumber: 4.1 Consensus size: 95
164718 CCCCAGGCCA
164728 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACG
1 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACG
*
164793 GGTGCGGGAGTGCCGCACAGAACCGAGCG-
66 GGTGCGGGAGTGCCGCACAGAACCGAGAGC
* * * * * *
164822 TTGGTGCGTGAGG-CTCGGTCACCATCGGCAATCTCAGGCGGGTGGCCTCGGTC-ACCATCGGCA
1 TGGGTGCG-GGGGCCTCGGTCACCATCGGCAACCCCCGACGGGT-GCCTCGG-CAACC--C--C-
** ** * *
164885 AACCCAGACGGGTGTCTCG-GT-CAC-CATCGGCAAACCCAGA-C
58 AGGCC--ACGGGTG-CGGGAGTGC-CGCA-CAG--AACCGAGAGC
* *
164926 -GGGT------GTCTCGGTTACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACG
1 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACG
* *
164984 GGTGCGGGAGTGCCGCACAGAGCCGAGAGT
66 GGTGCGGGAGTGCCGCACAGAACCGAGAGC
* * **
165014 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACACCCGACGGGTGCCTCGGCAACCCCAGTCCATT
1 TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACG
*
165079 GGTGCGGGAGTGCCGCACAGAACCGAGCGC
66 GGTGCGGGAGTGCCGCACAGAACCGAGAGC
165109 TGGGTGCGG
1 TGGGTGCGG
165118 CAGCCTCGCA
Statistics
Matches: 231, Mismatches: 36, Indels: 57
0.71 0.11 0.18
Matches are distributed among these distances:
87 6 0.03
88 2 0.01
89 16 0.07
90 3 0.01
91 3 0.01
92 1 0.00
94 34 0.15
95 98 0.42
96 12 0.05
97 26 0.11
99 1 0.00
100 3 0.01
101 3 0.01
102 12 0.05
103 5 0.02
104 6 0.03
ACGTcount: A:0.17, C:0.34, G:0.36, T:0.13
Consensus pattern (95 bp):
TGGGTGCGGGGGCCTCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCACG
GGTGCGGGAGTGCCGCACAGAACCGAGAGC
Found at i:173086 original size:32 final size:33
Alignment explanation
Indices: 173014--173094 Score: 110
Period size: 33 Copynumber: 2.5 Consensus size: 33
173004 GCGTGAGCCC
** *
173014 CGGTCACCATCGGCAATCCCAGGCGGGTGGCCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
* *
173047 CGGTCACCATCGGCAAAACCATACGGGT-GTCT
1 CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
173079 CGGTCACCATCGGCAA
1 CGGTCACCATCGGCAA
173095 CCCCGGGCCA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 19 0.44
33 24 0.56
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.16
Consensus pattern (33 bp):
CGGTCACCATCGGCAAAACCAGACGGGTGGCCT
Found at i:173240 original size:32 final size:31
Alignment explanation
Indices: 173149--173249 Score: 130
Period size: 32 Copynumber: 3.2 Consensus size: 31
173139 GTGCGTGAGG
* *
173149 CTCGGTCACCATCGGCAACCCAGGCGAGTGGC
1 CTCGGTCACCATCGGCAACCCAGACGGGT-GC
*
173181 CTCGGTCACCATCGGCAAACCCAGACGGGTGT
1 CTCGGTCACCATCGGC-AACCCAGACGGGTGC
* *
173213 CTCGGTCACCATCGGCAACCCCCGACGGGTGG
1 CTCGGTCACCATCGGCAA-CCCAGACGGGTGC
173245 CTCGG
1 CTCGG
173250 CAACCCCAGG
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
31 2 0.03
32 49 0.79
33 11 0.18
ACGTcount: A:0.18, C:0.38, G:0.31, T:0.14
Consensus pattern (31 bp):
CTCGGTCACCATCGGCAACCCAGACGGGTGC
Found at i:173367 original size:62 final size:62
Alignment explanation
Indices: 173294--173426 Score: 241
Period size: 62 Copynumber: 2.1 Consensus size: 62
173284 ACCGAGAGTT
*
173294 GGGTGCGGGGGCCTCGGTCACCATCGGCAA-CCCCGACGGGTGCCTCTGCAACCCCAGGCCAC
1 GGGTGCGGGGGCC-CGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
173356 GGGTGCGGGGGCCCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
1 GGGTGCGGGGGCCCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
173418 GGGTGCGGG
1 GGGTGCGGG
173427 AGTGCCGCAC
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
61 16 0.23
62 53 0.77
ACGTcount: A:0.14, C:0.39, G:0.38, T:0.10
Consensus pattern (62 bp):
GGGTGCGGGGGCCCGGTCACCATCGGCAACCCCCGACGGGTGCCTCGGCAACCCCAGGCCAC
Found at i:173403 original size:154 final size:157
Alignment explanation
Indices: 173088--173496 Score: 512
Period size: 154 Copynumber: 2.6 Consensus size: 157
173078 TCGGTCACCA
* ** *
173088 TCGGCAACCCCGGGCCATTGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGAGTTGGTGCGTGAGGCTCG
* * * * * ** * *
173153 GTCACCATCGGCAA-CCCAGGCGAGTGGCCTCGGTC-ACCATC-GGCAAACCCAG-ACGGGTGTC
66 GTCACCATCGGCAATCCCAGACGGGTGGCCTCTG-CAACC-CCAGGC-CA-CGGGTGCGGG-GGC
* *
173214 TCGGTCACCATCGGCAACCCCCGACGGGTGGC
126 CCGGTCACCATCGGCAACCCCCGACGGGTGCC
* *
173246 TCGGCAACCCCAGGCCACGGGTGCGGGAGTG-CGGACAG-ACCGAGAGTTGGGTGCG-GGGGCCT
1 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGAGTT-GGTGCGTGAGG-CT
*
173308 CGGTCACCATCGGCAA-CCCCGACGGGT-GCCTCTGCAACCCCAGGCCACGGGTGCGGGGGCCCG
64 CGGTCACCATCGGCAATCCCAGACGGGTGGCCTCTGCAACCCCAGGCCACGGGTGCGGGGGCCCG
173371 GTCACCATCGGCAACCCCCGACGGGTGCC
129 GTCACCATCGGCAACCCCCGACGGGTGCC
*
173400 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGCGTTGGTGCGTGAGGCTCG
1 TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGAGTTGGTGCGTGAGGCTCG
*
173465 GTCACCATCGGCAATCCCAGGCGGGTGGCCTC
66 GTCACCATCGGCAATCCCAGACGGGTGGCCTC
173497 GGTCACCATC
Statistics
Matches: 218, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
154 65 0.30
155 37 0.17
156 45 0.21
157 43 0.20
158 28 0.13
ACGTcount: A:0.17, C:0.35, G:0.36, T:0.12
Consensus pattern (157 bp):
TCGGCAACCCCAGGCCACGGGTGCGGGAGTGCCGCACAGAACCGAGAGTTGGTGCGTGAGGCTCG
GTCACCATCGGCAATCCCAGACGGGTGGCCTCTGCAACCCCAGGCCACGGGTGCGGGGGCCCGGT
CACCATCGGCAACCCCCGACGGGTGCC
Found at i:173562 original size:31 final size:32
Alignment explanation
Indices: 173461--173594 Score: 180
Period size: 33 Copynumber: 4.2 Consensus size: 32
173451 GTGCGTGAGG
* *
173461 CTCGGTCACCATCGGCAATCCCAGGCGGGTGGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGT-GC
* *
173494 CTCGGTCACCATCGACAAACCCAGACGGGTTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGG-TGC
*
173527 CTCGGTCACCATCGGCAAACCCAGAC-GGTGT
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
* *
173558 CTCGGTCACCATCGGCAACCCCCGACGGGTGC
1 CTCGGTCACCATCGGCAAACCCAGACGGGTGC
173590 CTCGG
1 CTCGG
173595 CAACCCCAGG
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
31 27 0.30
32 11 0.12
33 52 0.57
34 1 0.01
ACGTcount: A:0.19, C:0.37, G:0.28, T:0.16
Consensus pattern (32 bp):
CTCGGTCACCATCGGCAAACCCAGACGGGTGC
Done.