genome.fa.s7578.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007578.1 Hibiscus syriacus cultivar Beakdansim tig00021614_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72788

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000--1088	33	2.8	30	89	5	88	41	25	12	20	1.87
1010--1088	33	2.4	33	95	0	140	41	24	12	21	1.87
5771--5836	33	2.1	31	88	8	98	36	25	15	22	1.93
6981--7048	30	2.2	31	92	2	111	16	47	20	16	1.83
7001--7040	18	2.3	17	91	4	62	17	50	20	12	1.78
6987--7048	13	4.5	13	74	21	63	16	46	20	16	1.83
9508--9622	24	4.8	24	91	4	178	23	16	20	40	1.91
11700--11775	13	5.5	13	75	14	71	18	44	19	17	1.87
11696--11753	18	3.5	18	71	22	63	17	50	17	15	1.79
11694--11765	31	2.3	31	95	0	126	18	47	18	16	1.83
11700--11775	31	2.7	26	76	18	80	18	44	19	17	1.87
14319--14433	24	4.8	24	89	4	169	23	15	20	40	1.90
14322--14450	24	5.4	24	86	3	134	24	13	20	41	1.88
16835--16868	12	2.8	12	90	4	50	11	2	26	58	1.47
30180--30225	3	15.3	3	82	17	60	65	0	0	34	0.93
31259--31320	23	2.7	23	87	0	97	35	25	24	14	1.93
36557--36757	76	2.6	78	86	3	275	19	23	33	23	1.97
37357--37398	17	2.5	16	88	7	57	59	26	0	14	1.35
39353--39409	19	2.8	20	84	10	62	17	28	31	22	1.97
45197--45319	54	2.3	55	88	2	178	21	22	32	22	1.98
46314--46375	23	2.7	23	92	0	106	32	25	27	14	1.95
46969--47061	3	31.3	3	91	2	143	31	3	0	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48300--48357	23	2.4	25	80	11	75	31	3	1	63	1.21
48365--48412	2	24.0	2	100	0	96	50	0	0	50	1.00
48427--48782	136	2.6	135	90	4	531	37	6	8	47	1.60
49813--49910	46	2.1	46	88	5	153	35	12	18	33	1.88
51413--51454	7	6.0	7	86	8	50	14	16	9	59	1.60
51413--51454	15	3.0	14	80	10	50	14	16	9	59	1.60
53517--53548	2	16.0	2	100	0	64	50	0	0	50	1.00
53831--53864	17	2.0	17	100	0	68	88	0	11	0	0.52
53833--53913	7	11.9	7	74	7	51	79	0	17	3	0.88
58294--58482	53	3.6	54	78	7	199	37	14	19	29	1.91
59547--60067	45	11.6	45	94	0	884	23	23	19	33	1.97
59827--59946	25	5.2	25	60	22	73	23	24	17	35	1.96
60241--60317	3	26.3	3	81	5	95	29	3	0	66	1.10
61522--61579	23	2.4	25	80	11	75	31	3	1	63	1.21
61587--61612	2	13.0	2	100	0	52	50	0	0	50	1.00
61837--61861	10	2.5	10	100	0	50	32	0	0	68	0.90
61732--61954	115	1.9	115	89	1	349	36	5	10	47	1.61
64271--64412	43	3.4	42	75	13	148	22	16	33	27	1.96
64305--64454	40	3.7	40	72	11	124	22	16	34	28	1.95
64268--64454	83	2.3	83	87	1	268	21	16	34	27	1.95
64543--64682	73	1.9	73	84	5	185	37	10	17	35	1.84
64784--64904	37	3.3	37	79	7	113	38	9	14	37	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65266--65305	16	2.5	16	87	0	62	22	0	25	52	1.47
69701--69760	28	2.1	29	81	3	68	61	8	6	23	1.48

Tables:   1

The End!