Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007579.1 Hibiscus syriacus cultivar Beakdansim tig00021617_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68603

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2980--3024
21
2.1
21
83
0
54
60
2
2
35
1.22
2987--3084
21
4.5
22
68
22
66
52
1
4
42
1.27
3075--3099
13
1.9
13
100
0
50
48
4
0
48
1.20
3358--3401
19
2.2
20
84
4
54
56
0
0
43
0.99
7714--7750
15
2.3
17
81
13
51
64
5
2
27
1.28
9858--9912
26
2.1
26
86
0
74
50
18
1
29
1.57
9947--9997
26
2.0
26
96
0
93
50
15
5
27
1.67
10591--10632
21
2.0
20
86
4
57
42
0
2
54
1.13
13133--13230
49
2.0
49
95
0
178
37
19
15
27
1.92
24428--24479
3
17.0
3
84
11
70
65
3
0
30
1.10
24783--25018
40
5.5
42
71
15
153
22
18
32
27
1.97
24687--25030
133
2.6
133
92
1
539
22
18
31
27
1.97
25434--25492
30
2.0
30
89
0
91
44
3
20
32
1.68
25434--25483
15
3.3
15
97
0
91
42
4
20
34
1.70
25649--25773
64
2.0
64
88
1
189
43
11
14
31
1.80
25961--26321
67
5.5
65
92
3
439
45
11
11
30
1.77
26074--26338
30
8.1
30
68
16
143
44
11
10
33
1.76
26022--26321
67
4.5
67
96
1
525
45
11
12
31
1.76
26275--26347
30
2.4
30
86
4
85
43
12
8
35
1.72
26425--26518
27
3.5
25
79
12
89
48
14
9
26
1.75
26557--26863
28
10.5
27
65
18
107
45
15
10
27
1.79
26396--26909
119
4.3
119
95
1
879
46
14
11
27
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26795--26868
29
2.7
27
83
10
87
44
17
8
29
1.77
27152--27236
36
2.4
36
86
4
118
36
10
21
31
1.87
27188--27420
105
2.3
101
84
8
283
36
11
20
31
1.88
27446--27581
38
3.8
38
67
21
123
36
11
19
33
1.87
27423--27554
66
2.0
66
98
0
255
37
9
18
34
1.84
27512--27573
21
3.1
21
62
17
51
35
12
20
30
1.91
27506--27614
38
2.9
36
82
6
119
34
12
19
33
1.90
27956--28013
4
15.0
4
82
13
77
25
0
24
50
1.50
29188--29228
12
3.5
11
87
9
55
4
14
9
70
1.30
29195--29258
30
2.1
30
82
5
76
4
14
10
70
1.31
29829--29922
46
2.1
45
85
2
125
37
9
26
26
1.87
35818--35872
3
18.0
3
85
10
76
65
3
0
30
1.10
37090--37117
2
14.0
2
100
0
56
0
50
0
50
1.00
46349--46401
26
2.0
26
100
0
106
49
15
3
32
1.62
48784--48827
21
2.0
23
86
8
65
47
0
4
47
1.22
51281--51324
19
2.2
20
84
4
54
56
0
2
40
1.11
51608--51655
25
1.9
25
83
8
62
58
0
2
39
1.10
51634--51677
19
2.2
20
84
4
54
56
0
0
43
0.99
51702--51730
13
2.1
14
93
6
51
51
0
0
48
1.00
51977--52030
21
2.7
20
82
2
63
48
0
3
48
1.19
56039--56075
15
2.3
17
81
13
51
64
5
2
27
1.28
56817--56881
26
2.6
25
73
4
60
49
20
3
27
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
58309--58353
21
2.1
22
83
4
56
48
2
2
46
1.26
62074--62102
15
1.9
15
100
0
58
31
34
13
20
1.92
63073--63105
14
2.4
14
95
5
59
39
0
6
54
1.25
63267--63310
21
2.0
23
86
8
65
47
0
4
47
1.22
65709--65805
21
4.5
22
68
23
64
51
1
4
43
1.27
65796--65820
13
1.9
13
100
0
50
48
4
0
48
1.20

Tables:   1

The End!