genome.fa.s758.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000758.1 Hibiscus syriacus cultivar Beakdansim tig00001465_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46200

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307--347	12	3.6	12	80	12	59	26	0	21	51	1.48
307--353	22	2.1	22	96	0	85	27	0	21	51	1.48
320--353	10	3.2	10	84	15	50	26	0	20	52	1.46
307--355	11	4.4	11	80	12	55	28	0	20	51	1.48
779--803	9	2.8	9	100	0	50	72	0	8	20	1.10
854--900	20	2.3	20	100	0	94	36	17	0	46	1.48
3203--3252	3	16.7	3	79	8	57	32	0	2	66	1.03
5593--5633	19	2.2	19	86	8	57	51	2	4	41	1.36
6840--6877	20	1.9	20	94	0	67	15	10	15	57	1.64
6838--6895	26	2.2	26	90	0	89	17	15	13	53	1.73
10388--10463	18	4.3	18	82	12	95	82	0	17	0	0.66
10400--10457	8	7.9	7	80	16	64	84	0	15	0	0.62
10390--10477	38	2.3	39	90	5	135	82	0	14	2	0.76
10390--10463	9	8.2	9	82	14	82	83	0	16	0	0.64
10415--10473	18	3.5	16	78	17	57	84	0	11	3	0.73
10390--10477	13	6.8	13	75	19	78	82	0	14	2	0.76
10398--10477	25	3.4	23	81	11	92	83	0	13	2	0.74
13360--13935	40	14.4	40	91	2	808	31	17	11	39	1.85
13468--13531	20	3.2	20	62	16	51	31	15	10	42	1.82
13541--13649	23	5.3	23	62	28	64	32	13	12	41	1.83
13360--13935	120	4.8	120	92	0	911	31	17	11	39	1.85
13628--13691	20	3.2	20	62	16	51	31	15	10	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13701--13769	23	3.3	23	61	23	60	34	14	11	39	1.82
13328--14005	40	17.1	39	85	5	575	31	17	11	39	1.85
13938--14107	66	2.6	65	84	5	216	28	17	14	40	1.88
14040--14098	29	2.0	29	83	6	75	30	10	16	42	1.82
14114--14225	38	3.1	35	70	10	89	23	18	15	42	1.88
14069--14225	74	2.1	74	86	1	217	26	18	14	41	1.88
14082--14201	37	3.2	37	72	9	118	27	18	13	40	1.88
14215--14255	15	2.7	15	96	0	73	21	26	24	26	2.00
15207--15269	20	3.2	20	66	20	60	44	12	19	23	1.85
15549--15653	40	2.6	40	90	0	156	21	26	19	32	1.97
15607--15916	134	2.4	130	80	11	321	25	24	18	31	1.97
16119--16173	3	17.7	3	81	7	65	32	0	1	65	1.03
16881--16917	2	19.5	2	89	10	60	54	0	0	45	1.00
18527--18567	19	2.2	19	86	8	57	51	2	4	41	1.36
19776--19813	20	1.9	20	94	0	67	15	10	15	57	1.64
19774--19831	26	2.2	26	90	0	89	17	15	13	53	1.73
23329--23407	8	9.5	8	77	10	61	81	0	18	0	0.70
23339--23420	8	9.3	9	75	17	66	82	0	15	1	0.72
23330--23420	14	6.8	13	77	15	80	82	0	16	1	0.73
23326--23405	18	4.2	18	79	17	90	80	0	20	0	0.72
23330--23416	18	5.1	17	78	16	83	82	0	16	1	0.72
23356--23421	13	5.0	13	82	12	64	81	0	15	3	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26303--26877	40	14.4	40	93	0	929	31	17	11	39	1.85
26571--26634	20	3.2	20	62	16	51	31	15	10	42	1.82
26271--26947	40	17.1	38	86	6	351	30	17	12	39	1.86
26271--26947	80	8.6	77	87	6	453	30	17	12	39	1.86
26880--27049	66	2.6	65	84	5	216	28	17	14	40	1.88
26982--27040	29	2.0	29	83	6	75	30	10	16	42	1.82
27056--27167	38	3.1	35	70	10	89	23	18	15	42	1.88
27011--27167	74	2.1	74	86	1	217	26	18	14	41	1.88
27024--27143	37	3.2	37	72	9	118	27	18	13	40	1.88
27766--28099	136	2.5	135	86	4	455	34	16	22	26	1.95
28272--28334	20	3.2	20	66	20	60	44	12	19	23	1.85
28614--28718	40	2.6	40	93	0	174	22	27	19	30	1.98
28672--28981	134	2.4	129	80	11	328	26	24	18	31	1.97
29183--29232	3	16.7	3	79	8	57	32	0	2	66	1.03
31572--31612	19	2.2	19	86	8	57	51	2	4	41	1.36
33077--33114	13	3.0	13	84	3	51	63	0	0	36	0.95
33083--33125	13	3.4	13	84	9	54	58	0	0	41	0.98
34841--34915	25	3.0	25	80	9	73	9	10	0	80	0.92
34862--34963	20	5.2	19	77	15	75	6	17	0	75	1.01
34859--34966	10	11.1	10	71	15	59	6	17	0	75	1.00
34925--34968	17	2.8	16	86	10	56	4	20	0	75	0.98
38505--38529	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41810--41890	30	2.7	30	83	7	101	27	24	9	38	1.87

Tables:   1

The End!