Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007581.1 Hibiscus syriacus cultivar Beakdansim tig00021641_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101734

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3313--3636
81
4.0
80
80
4
339
28
23
12
35
1.91
3586--4045
68
6.8
68
92
0
742
29
24
15
31
1.95
4255--4460
55
3.7
55
86
3
263
33
19
11
35
1.88
8909--9089
81
2.2
81
83
6
215
28
24
11
36
1.89
9021--9153
70
1.9
70
89
3
205
31
24
10
33
1.89
9171--9561
68
5.8
68
87
1
552
29
24
14
30
1.95
17741--17933
52
3.7
51
87
3
253
37
18
22
21
1.94
17741--17933
103
1.9
103
85
2
271
37
18
22
21
1.94
19690--20039
129
2.7
130
78
5
336
25
27
18
29
1.98
19985--20095
46
2.3
49
83
9
129
28
28
15
27
1.96
20381--20423
18
2.4
18
80
0
50
32
4
4
58
1.39
20358--20414
21
2.8
19
73
7
51
35
3
5
56
1.39
22994--23088
48
2.0
49
91
2
156
35
17
11
34
1.86
23702--24192
30
16.4
30
98
0
937
33
23
19
23
1.97
27856--28286
30
14.4
30
99
0
853
33
23
19
23
1.97
28676--28718
2
22.0
2
95
4
79
51
0
0
48
1.00
29368--29476
55
2.0
56
90
5
177
31
19
11
38
1.86
31770--31798
6
5.0
6
91
8
51
0
13
0
86
0.58
31766--31808
17
2.2
21
80
19
58
2
16
0
81
0.79
31819--31845
6
4.5
6
100
0
54
0
0
14
85
0.61
42396--42553
71
2.2
71
82
0
190
32
19
16
31
1.94
42396--42573
71
2.5
71
81
1
187
33
20
16
29
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42538--42592
21
2.7
19
86
11
65
41
21
20
16
1.90
44233--44281
20
2.4
21
81
18
68
63
0
0
36
0.95
45019--45146
32
4.1
32
92
2
215
30
4
14
50
1.62
67492--67535
16
2.8
16
80
16
56
43
29
0
27
1.55
67513--67568
23
2.5
22
80
11
62
41
32
0
26
1.56
73229--73270
21
2.0
21
100
0
84
38
9
28
23
1.86
80567--80732
22
7.5
22
87
0
242
41
0
9
48
1.40
80562--80732
44
3.9
44
93
0
270
42
0
9
47
1.40
80756--80814
31
1.9
31
92
0
100
44
8
5
42
1.57
82429--82485
29
2.0
29
96
0
105
61
8
10
19
1.54
82431--82520
29
3.1
28
83
12
94
61
8
8
21
1.53
83418--83466
25
1.9
26
84
12
66
8
40
2
48
1.44
84633--85070
201
2.2
200
81
2
504
28
19
16
34
1.94
85654--85729
32
2.4
32
86
0
98
32
22
13
31
1.92
90116--90179
29
2.2
29
88
2
94
62
9
9
18
1.52
90121--90205
29
3.0
28
84
6
82
58
8
10
22
1.57
91146--91208
27
2.3
27
83
0
81
14
34
7
42
1.75
93621--93823
43
4.7
43
81
0
210
29
19
15
35
1.93
93615--93844
86
2.7
85
77
0
226
30
18
15
35
1.92
100208--100970
3
259.3
3
91
8
1252
0
32
0
67
0.91

Tables:   1

The End!